- Clone 'cima8110153' >
- Clone 'ma194b20' >
- Transcript 'Cisavi.CG.ENS81.R58....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R58.204997-210966.10052.t
Possible name(s)
PCDH18; PCDH19; PCDHGB7
Gene model
Location
R58 [204,996 / 210,966]
Amino acid sequence
Length: 1,176
>Cisavi.CG.ENS81.R58.204997-210966.10052.p
MNVFVVTTAVTLLSIIVSQCNASNTVSLRVYIDENSRPKTVVADMTEIFGLLWKDRLDRN
FKLLNQKFHSSSMFSPSARRHRPDAVDLGTSSGLITLRRRVDRETECGQAKECIIKVQAV
MLPQRVFSLLNLEIVITDTNDNAPTFPHKPIIVNVSESVTINDVVNLDSFQARDLDSGNN
SAITYTIAPSQPFGVNQYIDEAGRPHLQLIVTSELDYETKQVHHLTLYATDNGTPPLSNN
VALRILVTDANDHSPVFAQSEFVKELKENQPPGFITRVHAVDRDSGNNGRVQYFLGDESE
AVSHQLVTVDKDTGDVTLVQNLDRETHDGMRILIEARDSAPTNQRSSRMWLVLRIDDDND
NAPTINMNFIVDADGQTAYISEASPIGTYVAYVSASDADHGKNSEVDISIRTLVFGEPEY
ANTGHFVLAADGLIGTGLELDREIQNSYKVVVEARDAGDVPRSSFNNITVIILDENDNAP
VFQKPVYSVTLSEADGVGTTVTTVSATDKDALFPPVWTKNKQKEIVPSMNGKVTYLIDSD
DNTFSINAETGEITLVRPLDREGQSDWEVTIIARDGGSPYKESTCILKVVVSDVNDNRPL
FINPAIDNSTAYATILRDDVITRIQAVDYDSPMFSKVEISLLSVDGLKSTQETDGVEPYS
FFVLDRATGDLRLNMSTADMNDIVGSHVIVVKATDNGQPPLESRTSITIIVSDSLLPPSL
MYHERTVSSLVPGTAISTDFLIIVISLACATLILIVVIAAVVVKCKKDNKKIRTYNCRDA
ESENGWIARPTNSPSQNDVNTNTWPKSNGSHDASSQVTENERVSNPSTINKKQGKIVSRR
ASDSSSTAPMSMCPDVLITSRQDSATYNVTSSLIRPPSSLTTFSTEGKIAETRVIGLVHH
LTHADGDSGRGDSDPDTGSYDVVNDIDYQPSFSYVGSDLQRNGGTEALDGMGSKCTDECR
KFGHSDLCWMPSPSTGQYFPSTDSGVTRGSSYPQPTFTQANPGHDFQREYNRVLETIEET
TPALESSIAYEYDPEVMRQNVRRSICLSRLASESRLLSQTSSEPEVYHSGVLSRQYGLWS
DEYQLPVASVRPNSLSVSPAPSSGVANSHLSGNSSCPSTVFTHCDTDSKSSSSNSMLQKP
LYLTVTSRAPYVKPENTSSMKETQKIISDIDRLLSE
Nucleotide sequence
Length: 3,801
>Cisavi.CG.ENS81.R58.204997-210966.10052.t
AGGGTTAGTAAAATGAATGTATTTGTAGTCACAACCGCGGTGACCCTTCTTTCCATTATC
GTATCACAATGCAACGCGTCGAATACAGTTTCTTTGCGGGTTTACATCGACGAAAATAGC
AGGCCGAAAACAGTCGTCGCCGACATGACAGAAATATTCGGCCTGCTCTGGAAAGATAGA
CTTGATCGGAACTTTAAACTGCTAAATCAAAAATTTCATTCGTCGTCCATGTTTTCACCG
TCTGCTAGGAGGCACAGACCCGACGCAGTCGATCTAGGCACCAGTTCCGGCCTTATAACA
CTGCGCCGTCGTGTGGACAGGGAAACGGAGTGCGGCCAGGCTAAAGAGTGCATAATAAAA
GTGCAGGCGGTAATGCTTCCCCAGCGAGTCTTCTCCCTACTTAACCTCGAGATAGTAATC
ACCGATACAAACGATAATGCACCAACGTTTCCACACAAGCCTATAATCGTGAACGTGAGC
GAAAGTGTAACGATTAACGATGTCGTCAACTTAGACTCGTTCCAAGCAAGAGATCTTGAT
TCAGGTAACAATTCTGCTATAACTTACACCATTGCACCAAGCCAGCCATTCGGCGTGAAC
CAATATATTGACGAAGCTGGTCGTCCACACCTTCAACTGATAGTTACCAGTGAATTAGAC
TATGAAACCAAACAAGTTCACCATCTGACACTGTACGCTACCGACAACGGTACTCCCCCG
CTGTCCAACAACGTGGCCTTGCGCATCTTGGTAACCGACGCCAACGACCACAGTCCGGTG
TTCGCACAATCCGAGTTTGTAAAAGAACTGAAAGAAAACCAGCCACCCGGCTTTATAACA
CGGGTCCACGCGGTGGACAGGGACTCTGGGAACAACGGTAGAGTCCAGTATTTCCTGGGA
GATGAATCCGAAGCGGTGTCGCATCAGCTGGTAACCGTGGACAAAGACACCGGCGATGTG
ACACTGGTCCAGAATTTAGACAGAGAAACTCACGATGGAATGAGAATTCTGATCGAAGCA
CGTGATTCTGCGCCGACCAATCAACGCTCCTCCCGTATGTGGCTAGTGCTCCGAATAGAT
GATGACAATGACAACGCTCCAACCATCAACATGAACTTTATCGTCGACGCAGACGGGCAG
ACAGCATATATCTCTGAAGCCTCTCCCATCGGAACGTACGTCGCTTACGTAAGTGCGAGT
GATGCCGATCACGGAAAGAACAGCGAAGTTGACATCTCCATCAGAACCCTCGTCTTCGGC
GAACCGGAGTACGCCAACACCGGGCATTTCGTACTCGCAGCTGATGGCCTTATCGGGACT
GGTCTTGAACTCGACAGAGAAATCCAAAACAGTTACAAAGTAGTTGTCGAAGCCAGGGAT
GCTGGGGACGTGCCAAGGAGTTCATTTAACAACATTACTGTCATCATTTTGGACGAAAAC
GACAACGCCCCGGTGTTTCAAAAGCCTGTGTATTCGGTCACCTTATCTGAGGCAGACGGT
GTTGGAACCACTGTAACCACTGTATCCGCAACTGACAAAGACGCCCTCTTCCCCCCAGTT
TGGACAAAGAACAAGCAAAAGGAAATTGTACCTTCGATGAATGGCAAAGTTACGTATCTG
ATCGATAGTGATGATAATACCTTTTCTATTAATGCGGAAACGGGAGAAATAACTCTTGTT
AGACCTTTAGACCGAGAAGGACAAAGTGATTGGGAGGTTACTATCATTGCGAGAGACGGT
GGTTCCCCTTATAAAGAGTCAACGTGCATCTTGAAAGTTGTGGTGTCGGACGTCAACGAC
AATCGCCCTTTGTTCATCAATCCTGCAATCGACAATTCTACCGCTTACGCCACCATACTT
CGTGATGACGTTATTACCAGAATTCAGGCAGTGGATTATGACAGTCCGATGTTCTCCAAA
GTCGAAATTTCACTTCTCTCCGTTGACGGTTTAAAAAGTACCCAAGAAACTGACGGTGTT
GAGCCGTACTCCTTTTTTGTTCTGGACCGTGCTACTGGAGACCTACGACTCAACATGAGC
ACGGCAGACATGAATGATATTGTCGGAAGCCATGTTATTGTTGTAAAGGCAACTGACAAC
GGACAGCCGCCTTTGGAATCCAGAACCAGCATCACGATTATTGTATCCGACTCTTTGCTT
CCGCCATCTTTGATGTACCATGAACGGACGGTGTCCTCACTCGTCCCCGGGACTGCAATT
TCCACAGACTTTCTTATTATTGTCATCTCCCTCGCGTGCGCAACTTTGATTTTGATTGTT
GTCATCGCTGCAGTGGTCGTCAAGTGCAAGAAGGATAATAAGAAAATCCGTACATACAAT
TGCCGGGACGCTGAGAGTGAAAACGGGTGGATTGCTCGCCCAACCAACTCGCCGTCACAA
AACGATGTAAACACCAACACCTGGCCAAAGTCTAATGGGAGTCACGATGCATCATCTCAA
GTTACCGAAAACGAACGCGTGTCGAACCCGTCAACGATAAATAAGAAGCAAGGAAAGATC
GTAAGTAGACGTGCGTCAGACTCGAGCTCGACTGCACCTATGAGCATGTGCCCCGACGTT
TTGATTACGTCACGTCAAGATTCCGCCACGTACAACGTTACATCATCGTTAATCCGCCCA
CCTTCATCACTGACAACGTTTTCGACGGAAGGAAAGATCGCCGAAACGAGAGTGATTGGG
CTAGTTCACCACTTAACCCACGCAGATGGTGACAGTGGTCGAGGGGATAGCGACCCTGAC
ACTGGAAGCTACGATGTGGTGAACGACATAGATTATCAGCCGAGTTTTTCGTACGTGGGT
TCTGATTTGCAAAGAAACGGGGGAACCGAAGCCTTGGACGGAATGGGGTCGAAATGCACA
GACGAATGCCGCAAGTTTGGACACAGTGATTTGTGTTGGATGCCTTCACCGTCTACAGGT
CAATATTTCCCAAGCACTGACAGCGGAGTTACACGGGGCTCAAGTTACCCCCAGCCCACG
TTCACCCAAGCGAACCCCGGGCACGACTTTCAGCGCGAGTATAACCGAGTCCTTGAAACG
ATAGAGGAAACCACTCCCGCTCTCGAGTCTAGCATCGCGTATGAATATGATCCAGAGGTC
ATGCGCCAGAACGTGCGCCGCTCCATCTGTCTTTCTCGCCTCGCTTCCGAGTCCCGGTTA
CTCTCACAAACCAGCAGTGAGCCCGAGGTCTATCACAGCGGCGTTCTGAGTCGCCAATAC
GGCCTTTGGTCCGATGAGTACCAGTTACCGGTTGCCAGCGTCCGGCCTAATTCGTTATCC
GTCTCACCAGCGCCGTCTAGCGGCGTGGCAAATTCTCATTTATCAGGAAATTCGTCCTGT
CCGTCAACAGTCTTCACTCATTGCGACACAGACAGCAAGAGCTCATCGTCTAACAGCATG
CTCCAGAAGCCGCTTTACCTTACCGTAACATCGAGAGCCCCTTATGTGAAGCCTGAAAAC
ACATCAAGCATGAAGGAAACACAAAAAATTATCAGCGACATTGACCGACTGCTTTCAGAA
TAAAAAAGTAACCGCTACAACGTGAAATTATTTTCTTATCGTTCCCATCGTTTCATTTGA
CCAAATGCGCTTTTATGTCTGCGTAGCAGAGGCAATCGTGGAAATATTAAACTGATGTCG
CGACATTTCAAGCTGGCAGTGCCTGAACCGAATTCGACGCTTAATTGTGTTGCTTTACAT
TTGCTTTTCTTCTTTCGTTTGCGCTTTACTGTGAATTTTCTTTTCTACATTTCTTACAAA
TATATAAAAGTAATAACAAAA
| SMART |
Cadherin (IPR002126) - T[56-144] 0.33 - T[170-255] 7.8E-21 - T[278-363] 1.1E-18 - T[393-480] 1.3E-15 - T[519-599] 4.4E-22 - T[624-719] 3.2E-7 |
| Pfam |
Cadherin_N (IPR013164) - T[81-121] 1.1E-4 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[134-274] 1.83E-24 - T[245-369] 6.0E-22 - T[359-474] 1.06E-15 - T[470-604] 2.71E-27 - T[594-713] 8.38E-13 |
| Pfam |
Cadherin (IPR002126) - T[168-248] 3.5E-11 - T[265-347] 1.4E-13 - T[377-472] 3.9E-10 - T[487-591] 1.4E-15 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[245-255] . - T[470-480] . - T[589-599] . |
| PRINTS |
Cadherin (IPR002126) - T[305-324] 1.8E-30 - T[371-400] 1.8E-30 - T[447-459] 1.8E-30 - T[461-480] 1.8E-30 - T[480-493] 1.8E-30 - T[549-575] 1.8E-30 - T[583-600] 1.8E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDGJ_HUMAN | 30.779 % | 290 | 1.02E-82 |
| PCD18_HUMAN | 29.183 % | 330 | 2.55E-95 |
| PCD19_HUMAN | 30.959 % | 314 | 7.32E-90 |