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TRANSCRIPT CARD

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  1. EST 'BW068966'
  2. Transcript 'Phfumi.CG.MTP2014.S1...'
  3. Transcript 'Cisavi.CG.ENS81.R58....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R58.3067831-3077101.17628.t

Possible name(s)

DES; GFAP; VIM

Location

R58 [3,067,867 / 3,076,844]

Sequences

Amino acid sequence

Length: 531

>Cisavi.CG.ENS81.R58.3067831-3077101.17628.p
MSQRSRSTTQERSSSYKRHFGEGPGRFTYSAKAPGRSQSASRSYRYSSSSTGGAMGGGMG
GAMGGGMGGGMGGAMGSGMGGGMGGGMGGGMGGAMGGERIRMTRVNPVSSGITMRDINLM
SDAMGPEFEKMRINEKEELQVLNTRFAGYIQKVRALEQANKILEVQVEQLSAAQPGRVAD
MYEDELARLRREVDQISKEKANIQLQMENAALEANNWKDKYEEEAISKRELEDDLNSMRK
DCDDATLVRLDLERRLETLQEEIEFLKRTHDQEVAELMEQIRKTEIKIEMAPGPDLEELV
EDMRKQYEMLAAKNRADSEQWYTEKVSGLQSQAAKNDELVRGVRTELSEYRKSVQTLNME
IDSLRGTNDSLQRALGELEDRYNRDTSDYQETIMNLQAECDDLKTQMAQHLRQYQELMDV
KMALDIEIATYRKLLEGEETRLADKLRSSAGGHSRYVTSTTRSGYASGRGGEGAGYVSGR
GGDLSDDVETVTTKKVVVKTIETKDGKVVISQTEDVREQSSGDHDEAHPTL

Nucleotide sequence

Length: 1,651

>Cisavi.CG.ENS81.R58.3067831-3077101.17628.t
ATGTCGCAAAGGAGCAGATCAACAACTCAAGAGCGAAGCTCAAGCTACAAACGCCATTTT
GGCGAAGGGCCCGGCCGCTTTACATATTCAGCTAAGGCTCCCGGTCGATCTCAGTCCGCC
TCTCGATCGTACAGGTATTCCAGCAGTTCTACCGGAGGCGCCATGGGCGGTGGTATGGGT
GGCGCCATGGGTGGCGGCATGGGTGGTGGCATGGGTGGCGCCATGGGTAGCGGCATGGGC
GGTGGTATGGGTGGCGGCATGGGTGGTGGCATGGGTGGTGCCATGGGCGGTGAGCGTATC
CGAATGACCCGTGTAAACCCAGTCAGTAGCGGGATCACCATGAGAGACATCAACTTGATG
AGCGACGCCATGGGCCCAGAATTCGAAAAGATGAGAATAAACGAAAAAGAAGAACTGCAA
GTTCTCAACACCCGCTTTGCAGGATACATTCAAAAGGTCCGTGCCTTGGAGCAAGCGAAC
AAAATCTTGGAGGTTCAAGTCGAACAACTAAGCGCGGCTCAACCTGGTCGGGTTGCAGAT
ATGTATGAAGACGAGTTGGCAAGACTTCGTCGTGAAGTGGACCAGATTAGCAAGGAAAAG
GCGAACATCCAGCTTCAGATGGAAAATGCCGCACTAGAGGCAAACAACTGGAAGGATAAG
TATGAAGAGGAGGCGATAAGCAAACGTGAACTGGAGGACGACCTGAACTCGATGAGAAAA
GATTGCGATGATGCAACTCTCGTCCGACTCGACCTTGAACGGAGGTTGGAAACTCTCCAA
GAAGAAATCGAGTTCCTCAAGCGAACGCACGACCAGGAGGTTGCAGAGCTTATGGAGCAA
ATCAGGAAAACCGAGATCAAAATTGAGATGGCTCCCGGACCCGATCTGGAGGAACTCGTA
GAAGACATGAGGAAACAATATGAGATGTTGGCTGCTAAGAACAGAGCCGATTCCGAGCAG
TGGTACACCGAAAAGGTCAGCGGTCTCCAAAGCCAAGCCGCCAAGAACGACGAACTGGTA
CGAGGCGTGCGAACTGAACTGAGCGAATACAGGAAGAGCGTTCAAACGCTCAACATGGAG
ATCGATTCTCTCCGTGGAACCAACGACTCACTTCAACGTGCGCTTGGAGAACTCGAAGAC
AGATACAACAGAGACACTTCTGACTACCAAGAAACCATCATGAACCTTCAGGCCGAATGT
GATGACTTGAAGACCCAGATGGCCCAACATCTCCGTCAGTACCAGGAACTAATGGACGTG
AAGATGGCACTCGACATCGAAATCGCAACTTACAGAAAACTCTTGGAGGGCGAGGAAACG
AGGCTTGCAGACAAGCTTCGCTCGTCAGCTGGGGGACATTCTAGATACGTCACAAGCACA
ACTAGATCGGGATACGCATCTGGACGGGGAGGTGAAGGTGCCGGTTACGTATCTGGACGA
GGTGGTGACCTTAGTGATGACGTAGAGACAGTAACAACAAAGAAAGTGGTCGTTAAGACG
ATCGAAACGAAAGATGGAAAGGTGGTGATCAGCCAAACGGAAGACGTCCGTGAGCAATCT
TCCGGCGATCACGACGAAGCTCACCCAACTTTGTGAGCACTATGACATCACAAGGACAAT
TCTTTTAAAATGTGTTGAACAATTTGTAGAT

InterProScan

PANTHER
IF (IPR001664) - T[66-527] 1.3E-151
Pfam
IF (IPR001664) - T[134-441] 2.2E-99
SMART
IF (IPR001664) - T[134-441] 1.2E-133
PRINTS
Keratin_I (IPR002957) - T[210-223] 7.2E-17 - T[231-254] 7.2E-17 - T[284-304] 7.2E-17 - T[356-371] 7.2E-17 - T[382-408] 7.2E-17
ProSitePatterns
Intermediate_filament_CS (IPR018039) - T[428-436] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VIME_HUMAN 38.664 % 328 3.74E-107
GFAP_HUMAN 37.931 % 293 2.27E-94
DESM_HUMAN 40.535 % 285 1.2E-90