- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R65....' >
- Transcript 'Mooccu.CG.ELv1_2.S69...' >
- Transcript 'Cisavi.CG.ENS81.R67....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R67.1507499-1523609.14368.t
Possible name(s)
POLR1A; POLR2A; POLR3A
Gene model
Location
R67 [1,507,498 / 1,523,264]
Amino acid sequence
Length: 1,706
>Cisavi.CG.ENS81.R67.1507499-1523609.14368.p
KDAIVERNRKVSPPESSVDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVTEGGRPKML
GLMDPRQGVVDRMSRCQTCASNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCS
RLLVEKGNPKIRQIMAKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQLGHGGCG
RYQPKIRRNGMELVAEWKHVNEDSQEKKIVVSAERVHEIFKRISDEESDILGMDPRFARP
EWMINTVIPVPPLCVRPSVTMGGTSARSQDDLTHKLADIIKANQQLKRNEQNGTASHIIL
EDVKLLQYHVATLCDNDMPGVPKALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNLKIDEVGVPRSIACNLTYPEIVTPFNIDRMQELVRRGNNQYPGAKYIIRDGG
DRIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVRVLPWSTFRM
NLSVTTPYNADFDGDEMNMHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGIVQDTLTA
VRKMTKRDSFIEKADFMNLLMYLGDWDGYLPQPAILKPKPLWTGKQIFSLIIPPGINCIR
NHSTHPDGEDTGPYKHISPGDTRVLVENGILLSGIICKKSLGTSAGSLCHVVALEKSADV
CREFYSNIQTVVNNWLMIEGHSIGIGDTIADAQTYQDIQNQIRKAKQEVIEVSRFGLDFR
MSKIYNPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKIN
ISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHA
MGGREGLIDTAVKTAETGYIQRRLVKAMEAVMVRYDGTIRQCNDYMIQLCYGEDGLAGEK
VEFQNLATLKPSHKTFDKKFRFDYTKERYMRRCLNEDIVRMIQTDVSIQQELDGEFDQLQ
QDRENIRAIFPTGDSKVVLPVNLGRLIWNAQKIFHIDLRGPANLNPLRVIEGVRDLSKKL
VIVCGEDRLSKEAQSNATLLFNVHLRSTLCSRRVADEFRLSAEAFEWILGEVETKFQQAQ
VHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPRTPSLT
IYLVGPATRDAQRCKVRDLNHATLRKVTANTAIYYDPDPMSTVIQEDQEFVNVYYEMPDF
DVTRISSWLLRIELDRKRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDNAEKLVLRIRIM
NSEEQKTDDGSDEQADKMEDDVFLRYIEANMLTDMTLQGIPQIAKVYMHLPKEENKKRIV
ITKEGEFNAVQDWILETDGTALMRILSERDIDPVRTTSNDICEIFAVLGIEAVRKALERE
INHVISFDGSYVNYRHLALLCEVMTSKGHLMAITRHGINRQETGALMRCSFEETVDILME
AASSAETDHMDGVSENIMLGQLVPGGTGCFGLLLDAEKCTYAMEIPTNIGGVGGSYSPVS
PAYEPGTPGTPQSPSYTPTSPTYSPTSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYNPTSPSYSPTSPSYSPASPSYSPTSPSYTSPSYSPTSP
SYSPTSPSYSPTSPGYSPSSPSYSPS
Nucleotide sequence
Length: 5,118
>Cisavi.CG.ENS81.R67.1507499-1523609.14368.t
AAAGACGCCATTGTTGAGCGAAATCGAAAGGTTTCTCCTCCTGAATCTAGTGTGGATCTA
AAACTTGTTAAACGAGTTCAGTTTGGAATCCTCAGCCCAGATGAAATTAAACGAATGTCG
GTGACGGAGGGTGGGGTTCAGTACCCTGAGGTGACGGAAGGGGGAAGACCCAAGATGTTG
GGTCTGATGGATCCCCGTCAAGGCGTGGTTGATAGAATGTCCAGGTGTCAGACTTGCGCC
AGCAACATGACCGACTGTCCCGGACACTTCGGACATATTGAACTTGCACGACCCGTGTTT
CATGTTGGATTTCTTACAAAAACCATCAAAATACTTCGTTGTGTGTGCTACTACTGCTCG
AGGCTACTTGTGGAAAAGGGAAACCCCAAAATCCGTCAAATCATGGCGAAATCGAAGGGT
CAGCCGAGGAAGAGACTCGCGCATGTGTACGAGTTGTGCAAAGGGAAGAACATCTGCGAA
GGAGGGGAGGAGATGGACAACACCTTCGATGTTCAACAGCTGGGGCATGGTGGCTGTGGT
CGTTACCAACCAAAGATCCGACGAAACGGGATGGAACTGGTTGCCGAGTGGAAACACGTC
AACGAGGATTCGCAGGAGAAGAAGATCGTTGTCTCAGCTGAGCGTGTTCATGAGATATTT
AAGAGAATCTCCGACGAGGAATCTGACATCCTCGGCATGGACCCAAGGTTTGCTCGTCCC
GAATGGATGATTAACACCGTGATACCTGTTCCCCCACTGTGTGTACGTCCATCCGTCACT
ATGGGAGGCACCAGTGCGAGAAGTCAGGATGATTTAACGCACAAGTTGGCTGACATTATT
AAAGCCAACCAACAGTTAAAACGAAATGAACAAAACGGAACTGCCTCCCATATTATATTA
GAAGATGTGAAGTTACTACAGTACCATGTTGCTACACTGTGTGATAACGATATGCCTGGA
GTTCCCAAGGCGTTGCAAAAATCCGGTCGCCCTTTGAAATCGATCAAACAGCGTCTGAAA
GCAAAGGAGGGTAGGATAAGAGGGAACTTGATGGGTAAGCGGGTGGACTTCTCCGCTCGT
ACCGTCATTACCCCTGACCCCAATCTTAAAATTGATGAGGTTGGTGTGCCACGCTCCATC
GCATGCAACCTGACGTACCCCGAGATCGTCACCCCATTCAACATCGATCGGATGCAGGAA
CTTGTTCGACGGGGGAACAACCAGTACCCCGGGGCGAAATACATCATCCGAGACGGTGGG
GATCGTATCGACCTCCGGTATCACCCCAAACCCTCCGATCTGCATCTGCAAGTGGGCTAC
AAGGTTGAGCGGCACATAAAAGATGGCGACGTGATTGTGTTCAACCGACAGCCCACTCTG
CACAAGATGTCCATGATGGGACATAAAGTCAGAGTTCTGCCCTGGTCTACTTTTAGAATG
AATTTATCGGTAACGACGCCGTACAACGCTGATTTCGATGGAGACGAGATGAACATGCAC
GTCCCGCAAACCATGGAAACGAGAGCCGAGATCCTCCAACTCGCCATGGTGAACCGGATG
ATCATCACTCCACAGAGCAATCGGCCGGTCATGGGAATTGTGCAGGACACACTGACCGCC
GTCCGCAAAATGACCAAGCGGGATTCCTTCATTGAAAAGGCCGACTTCATGAACCTGTTA
ATGTACCTGGGTGATTGGGACGGGTACCTCCCCCAACCTGCGATCCTCAAACCCAAGCCT
CTCTGGACGGGGAAGCAGATCTTCTCGCTCATCATCCCCCCTGGGATAAACTGCATCCGG
AACCACAGCACCCATCCTGATGGGGAGGACACTGGACCTTATAAGCACATCTCACCCGGG
GATACAAGGGTGCTGGTGGAGAACGGTATCTTGCTGAGCGGAATAATATGTAAGAAGTCG
CTGGGTACGTCTGCGGGGTCTCTATGTCACGTGGTTGCACTGGAGAAATCTGCCGATGTG
TGCCGAGAGTTCTATAGCAATATACAGACTGTGGTGAACAACTGGTTGATGATTGAGGGA
CATTCCATCGGTATCGGAGATACCATTGCCGATGCACAAACCTACCAAGATATTCAAAAC
CAGATCAGGAAAGCAAAGCAGGAAGTCATAGAGGTGAGCAGATTTGGATTGGATTTCCGC
ATGTCTAAGATTTACAACCCCACTCCTGGTAATACTCTGCGGCAGACATTTGAAAATCAA
GTCAACAGGATTCTGAACGATGCCCGTGACAAAACTGGTTCATCTGCTCAGAAGAGTTTA
TCAGACTTCAACAACTTTAAAGCTATGGTGGTGGCTGGCTCTAAAGGGTCCAAAATCAAC
ATCTCCCAGGTTATTGCTGTTGTGGGTCAACAGAACGTGGAAGGAAAGCGGATCCCATTT
GGGTTTCGTCACCGAACCCTGCCCCATTTTATTAAGGATGATTATGGTCCAGAGGCTCGT
GGGTTTGTGGAGAACTCGTACCTTGCTGGGTTGACCCCAACCGAGTTTTACTTCCATGCC
ATGGGAGGTAGAGAGGGTCTCATCGATACTGCTGTCAAAACTGCCGAAACTGGTTACATC
CAGCGTCGACTGGTGAAAGCCATGGAAGCGGTTATGGTGCGATACGACGGCACGATACGA
CAATGTAACGATTACATGATCCAGCTCTGCTACGGGGAAGATGGCTTGGCTGGGGAAAAG
GTGGAGTTCCAGAACCTCGCCACGCTTAAACCAAGCCACAAAACCTTCGACAAGAAATTC
CGATTCGACTACACCAAGGAGCGATACATGCGTCGATGTTTGAACGAGGATATCGTCCGA
ATGATCCAGACCGACGTCTCCATCCAACAGGAGCTCGATGGCGAGTTCGACCAGTTACAG
CAGGACAGGGAAAATATTCGAGCCATTTTTCCAACCGGGGACAGCAAGGTTGTATTACCC
GTCAACTTGGGCCGATTGATCTGGAACGCACAAAAGATCTTCCACATCGACCTGAGAGGT
CCCGCCAACCTCAACCCGCTCCGAGTGATCGAGGGAGTCCGGGATCTCAGCAAGAAACTC
GTCATCGTGTGCGGGGAGGATCGACTGAGCAAGGAGGCGCAGAGCAACGCCACTCTGCTC
TTCAACGTTCATCTGAGATCCACGTTGTGCTCTCGGAGAGTTGCAGATGAGTTCCGACTC
TCGGCTGAAGCGTTTGAATGGATTCTGGGGGAAGTTGAAACTAAGTTCCAACAAGCTCAG
GTTCACCCTGGTGAGATGGTGGGTGCACTCGCTGCCCAGTCCCTGGGAGAACCCGCCACC
CAGATGACCCTGAACACTTTCCACTACGCCGGTGTGTCGGCGAAGAACGTAACCCTCGGA
GTACCCCGGTTGAAGGAGTTGATCAACGTATCGAAGAAACCCCGAACCCCCTCACTCACC
ATATACCTCGTGGGGCCGGCTACCAGGGATGCACAGCGTTGCAAGGTCCGGGATTTAAAT
CACGCCACCCTCCGCAAGGTGACGGCGAACACGGCGATCTACTACGATCCGGACCCCATG
AGCACAGTCATCCAGGAGGACCAGGAATTCGTCAATGTCTATTACGAGATGCCGGACTTT
GATGTTACAAGGATTTCATCGTGGCTGCTCCGTATTGAACTCGACCGGAAGAGAATGACA
GACAAGAAACTGAGTATGGAGCAAATTGCGGAGAAGATCAGTGCTGGGTTCGGTGACGAT
TTGAATTGTATTTTCAATGACGACAATGCAGAGAAGCTGGTATTACGAATTCGTATTATG
AACAGTGAGGAGCAGAAGACTGATGACGGATCGGATGAGCAAGCTGATAAGATGGAGGAT
GACGTCTTCCTCCGATACATTGAAGCTAATATGCTTACCGACATGACTCTACAGGGAATT
CCACAAATTGCAAAGGTATACATGCACTTGCCAAAAGAAGAAAACAAAAAGCGAATCGTT
ATTACAAAGGAGGGGGAGTTTAACGCCGTTCAAGATTGGATTTTGGAAACCGACGGCACA
GCTCTGATGAGGATTTTATCGGAGCGCGATATCGACCCGGTCCGAACCACCTCCAACGAC
ATCTGCGAGATTTTCGCTGTCCTCGGTATTGAAGCTGTGCGGAAAGCTCTGGAACGGGAA
ATTAACCACGTCATTTCCTTTGACGGTTCCTACGTCAACTACCGTCATCTTGCGCTGCTG
TGTGAGGTCATGACTTCAAAGGGACATTTGATGGCGATCACGAGACACGGGATAAATCGG
CAAGAGACAGGCGCACTCATGAGATGCTCCTTTGAAGAGACAGTCGATATTTTAATGGAG
GCTGCATCATCGGCAGAAACTGACCACATGGATGGCGTGTCGGAAAACATAATGTTGGGC
CAGTTGGTACCGGGTGGAACCGGTTGCTTCGGCTTACTGCTCGATGCAGAGAAGTGCACC
TATGCCATGGAGATACCAACCAACATTGGAGGAGTTGGGGGTAGCTATTCCCCAGTATCC
CCAGCTTACGAACCAGGGACTCCGGGCACCCCACAAAGCCCCAGTTACACCCCAACAAGT
CCAACATATTCACCCACCTCACCTCGGTATTCCCCAACCAGCCCCAGCTACAGCCCCACA
TCACCCAGCTATTCACCCACGTCACCCTCCTACAGCCCCACGTCTCCATCTTATTCACCC
ACAAGTCCATCCTATTCACCCACCTCTCCAAGTTACAGTCCTACTTCACCGAGTTACAGC
CCCACTTCACCCAGCTACTCCCCAACCTCACCCTCATATAGCCCCACTTCTCCAAGCTAC
AGCCCCACATCCCCAAGTTATTCACCCACCAGCCCATCTTACTCTCCAACAAGCCCCAGT
TACTCTCCAACCTCCCCCAGCTATTCACCCACATCACCCAGTTACAGCCCCACATCACCC
TCATATAACCCAACCAGTCCATCGTACTCCCCAACAAGCCCCTCTTATTCACCTGCAAGC
CCCAGTTACTCCCCTACCTCCCCAAGTTACACAAGCCCTTCATACTCACCCACCAGCCCC
TCATATTCACCTACAAGCCCCTCGTACTCTCCAACGAGCCCCGGGTATTCACCTTCCTCA
CCCAGCTACTCCCCATCA
| Pfam |
RNA_pol_Rpb1_1 (IPR007080) - T[21-350] 1.0E-107 |
| SMART |
RNA_pol_N (IPR006592) - T[241-545] 3.3E-198 |
| Pfam |
RNA_pol_asu (IPR000722) - T[352-517] 3.8E-75 |
| Pfam |
RNA_pol_Rpb1_3 (IPR007066) - T[521-688] 1.7E-50 |
| Gene3D |
Rpb1_funnel_sf (IPR038120) - T[683-832] 5.2E-49 |
| Pfam |
RNA_pol_Rpb1_4 (IPR007083) - T[723-823] 9.2E-36 |
| Pfam |
RNA_pol_Rpb1_5 (IPR007081) - T[830-1425] 6.0E-98 |
| Pfam |
RNA_pol_Rpb1_6 (IPR007075) - T[896-1079] 6.2E-67 |
| Pfam |
RNA_pol_Rpb1_7 (IPR007073) - T[1162-1298] 1.5E-55 |
| Gene3D |
RNA_pol_Rpb1_7_sf (IPR038593) - T[1162-1299] 3.9E-56 |
| Pfam |
RNA_pol_II_repeat_euk (IPR000684) - T[1497-1509] 1.6 - T[1511-1523] 6.4 - T[1524-1537] 0.02 - T[1538-1551] 0.42 - T[1545-1558] 0.54 - T[1552-1565] 0.46 - T[1559-1572] 0.55 - T[1566-1579] 0.5 - T[1573-1586] 0.59 - T[1580-1593] 0.52 - T[1587-1600] 0.61 - T[1594-1607] 0.52 - T[1601-1614] 0.6 - T[1608-1621] 0.49 - T[1615-1628] 0.56 - T[1629-1642] 0.51 - T[1643-1656] 1.1 - T[1657-1670] 3.1 - T[1671-1682] 4.4 - T[1683-1696] 0.041 |
| ProSitePatterns |
RNA_pol_II_repeat_euk (IPR000684) - T[1516-1522] . - T[1530-1536] . - T[1537-1543] . - T[1551-1557] . - T[1558-1564] . - T[1565-1571] . - T[1572-1578] . - T[1586-1592] . - T[1593-1599] . - T[1600-1606] . - T[1607-1613] . - T[1621-1627] . - T[1628-1634] . - T[1635-1641] . - T[1675-1681] . - T[1682-1688] . - T[1696-1702] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPA1_HUMAN | 32.619 % | 340 | 6.62E-95 |
| RPC1_HUMAN | 36.768 % | 570 | 1.59E-176 |
| RPB1_HUMAN | 73.913 % | 2511 | 0 |