Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 1,748

>Cisavi.CG.ENS81.R67.1507499-1523609.14371.p
NKTMALTESSVDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVTEGGRPKMLGLMDPRQ
GVVDRMSRCQTCASNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCSRLLVEKG
NPKIRQIMAKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKVGHGGC
GRYQPKIRRNGMELVAEWKHVNEDSQEKKIVVSAERDDLTHKLADIIKANQQLKRNEQNG
TASHIILEDVKLLQYHVATLCDNDMPGVPKALQKSGRPLKSIKQRLKAKEGRIRGNLMGK
RVDFSARTVITPDPNLKIDEVGVPRSIACNLTYPEIVTPFNIDRMQELVRRGNNQYPGAK
YIIRDGGDRIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVRVL
PWSTFRMNLSVTTPYNADFDGDEMNMHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGI
VQDTLTAVRKMTKRDSFIEKADFMNLLMYLGDWDGYLPQPAILKPKPLWTGKQIFSLIIP
PGINCIRNHSTHPDGEDTGPYKHISPGDTRVLVENGILLSGIICKKSLGTSAGSLCHVVA
LEKSADVCREFYSNIQTVVNNWLMIEGHSIGIGDTIADAQTYQDIQNQIRKAKQEVIELT
KKIYNPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAM
GGREGLIDTAVKTAETGYIQRRLVKAMEAVMVRYDGTIRQCNDYMIQLCYGEDGLAGEKV
EFQNLATLKPSHKTFDKKFRFDYTKERYMRRCLNEDIVRMIQTDVSIQQELDGEFDQLQQ
DRENIRAIFPTGDSKVVLPVNLGRLIWNAQKIFHIDLRGPANLNPLRVIEGVRDLSKKLV
IVCGEDRLSKEAQSNATLLFNVHLRSTLCSRRVADEFRLSAEAFEWILGEVETKFQQAQV
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPRTPSLTI
YLVGPATRDAQHFQPLPTHRMVLCRLEHATLRKVTANTAIYYDPDPMSTVIQEDQEFVNV
YYEMPDFDVTRISSWLLRIELDRKRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDNAEKL
VLRIRIMNSEEQKTDDGSDEQADKMEDDVFLRYIEANMLTDMTLQGIPQIAKRIVITKEG
EFNAVQDWILETDGTALMRILSERDIDPVRTTSNDICEIFAVLGIEAVRKALEREINHVI
SFDGSYVNYRHLALLCEVMTSKGHLMAITRHGINRQETGALMRCSFEETVDILMEAASSA
ETDHMDGVSENIMLGQLVPGGTGCFGLLLDAEKCTYAMEIPTNIGGVGGTGMFYGSMASP
SSMSPAMTPWNSGAATPGFMGSFTPGALLSPLGPGSPSSPYIPSPKHSAMSPSYSPVSPA
YEPGTPGTPQSPSYTPTSPTYSPTSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYNPTSPSYSPTSPSYSPASPSYSPTSPSYSPASPSYSPSSP
KYSPASPSYSPASPEYSPSSPKYAPSSPSYSPASPSYSPSSPSYSPSSPKYSPSSPSYSP
ASPSYSPT

Nucleotide sequence

Length: 5,244

>Cisavi.CG.ENS81.R67.1507499-1523609.14371.t
AACAAAACCATGGCACTCACAGAATCTAGTGTGGATCTAAAACTTGTTAAACGAGTTCAG
TTTGGAATCCTCAGCCCAGATGAAATTAAACGAATGTCGGTGACGGAGGGTGGGGTTCAG
TACCCTGAGGTGACGGAAGGGGGAAGACCCAAGATGTTGGGTCTGATGGATCCCCGTCAA
GGCGTGGTTGATAGAATGTCCAGGTGTCAGACTTGCGCCAGCAACATGACCGACTGTCCC
GGACACTTCGGACATATTGAACTTGCACGACCCGTGTTTCATGTTGGATTTCTTACAAAA
ACCATCAAAATACTTCGTTGTGTGTGCTACTACTGCTCGAGGCTACTTGTGGAAAAGGGA
AACCCCAAAATCCGTCAAATCATGGCGAAATCGAAGGGTCAGCCGAGGAAGAGACTCGCG
CATGTGTACGAGTTGTGCAAAGGGAAGAACATCTGCGAAGGAGGGGAGGAGATGGACAAC
ACCTTCGATGTTCAACAGCGTGATGAAGATGAACCGAGGAAAGTGGGGCATGGTGGCTGT
GGTCGTTACCAACCAAAGATCCGACGAAACGGGATGGAACTGGTTGCCGAGTGGAAACAC
GTCAACGAGGATTCGCAGGAGAAGAAGATCGTTGTCTCAGCTGAGCGTGATGATTTAACG
CACAAGTTGGCTGACATTATTAAAGCCAACCAACAGTTAAAACGAAATGAACAAAACGGA
ACTGCCTCCCATATTATATTAGAAGATGTGAAGTTACTACAGTACCATGTTGCTACACTG
TGTGATAACGATATGCCTGGAGTTCCCAAGGCGTTGCAAAAATCCGGTCGCCCTTTGAAA
TCGATCAAACAGCGTCTGAAAGCAAAGGAGGGTAGGATAAGAGGGAACTTGATGGGTAAG
CGGGTGGACTTCTCCGCTCGTACCGTCATTACCCCTGACCCCAATCTTAAAATTGATGAG
GTTGGTGTGCCACGCTCCATCGCATGCAACCTGACGTACCCCGAGATCGTCACCCCATTC
AACATCGATCGGATGCAGGAACTTGTTCGACGGGGGAACAACCAGTACCCCGGGGCGAAA
TACATCATCCGAGACGGTGGGGATCGTATCGACCTCCGGTATCACCCCAAACCCTCCGAT
CTGCATCTGCAAGTGGGCTACAAGGTTGAGCGGCACATAAAAGATGGCGACGTGATTGTG
TTCAACCGACAGCCCACTCTGCACAAGATGTCCATGATGGGACATAAAGTCAGAGTTCTG
CCCTGGTCTACTTTTAGAATGAATTTATCGGTAACGACGCCGTACAACGCTGATTTCGAT
GGAGACGAGATGAACATGCACGTCCCGCAAACCATGGAAACGAGAGCCGAGATCCTCCAA
CTCGCCATGGTGAACCGGATGATCATCACTCCACAGAGCAATCGGCCGGTCATGGGAATT
GTGCAGGACACACTGACCGCCGTCCGCAAAATGACCAAGCGGGATTCCTTCATTGAAAAG
GCCGACTTCATGAACCTGTTAATGTACCTGGGTGATTGGGACGGGTACCTCCCCCAACCT
GCGATCCTCAAACCCAAGCCTCTCTGGACGGGGAAGCAGATCTTCTCGCTCATCATCCCC
CCTGGGATAAACTGCATCCGGAACCACAGCACCCATCCTGATGGGGAGGACACTGGACCT
TATAAGCACATCTCACCCGGGGATACAAGGGTGCTGGTGGAGAACGGTATCTTGCTGAGC
GGAATAATATGTAAGAAGTCGCTGGGTACGTCTGCGGGGTCTCTATGTCACGTGGTTGCA
CTGGAGAAATCTGCCGATGTGTGCCGAGAGTTCTATAGCAATATACAGACTGTGGTGAAC
AACTGGTTGATGATTGAGGGACATTCCATCGGTATCGGAGATACCATTGCCGATGCACAA
ACCTACCAAGATATTCAAAACCAGATCAGGAAAGCAAAGCAGGAAGTCATAGAGCTCACA
AAGAAGATTTACAACCCCACTCCTGGTAATACTCTGCGGCAGACATTTGAAAATCAAGTC
AACAGGATTCTGAACGATGCCCGTGACAAAACTGGTTCATCTGCTCAGAAGAGTTTATCA
GACTTCAACAACTTTAAAGCTATGGTGGTGGCTGGCTCTAAAGGGTCCAAAATCAACATC
TCCCAGGTTATTGCTGTTGTGGGTCAACAGAACGTGGAAGGAAAGCGGATCCCATTTGGG
TTTCGTCACCGAACCCTGCCCCATTTTATTAAGGATGATTATGGTCCAGAGGCTCGTGGG
TTTGTGGAGAACTCGTACCTTGCTGGGTTGACCCCAACCGAGTTTTACTTCCATGCCATG
GGAGGTAGAGAGGGTCTCATCGATACTGCTGTCAAAACTGCCGAAACTGGTTACATCCAG
CGTCGACTGGTGAAAGCCATGGAAGCGGTTATGGTGCGATACGACGGCACGATACGACAA
TGTAACGATTACATGATCCAGCTCTGCTACGGGGAAGATGGCTTGGCTGGGGAAAAGGTG
GAGTTCCAGAACCTCGCCACGCTTAAACCAAGCCACAAAACCTTCGACAAGAAATTCCGA
TTCGACTACACCAAGGAGCGATACATGCGTCGATGTTTGAACGAGGATATCGTCCGAATG
ATCCAGACCGACGTCTCCATCCAACAGGAGCTCGATGGCGAGTTCGACCAGTTACAGCAG
GACAGGGAAAATATTCGAGCCATTTTTCCAACCGGGGACAGCAAGGTTGTATTACCCGTC
AACTTGGGCCGATTGATCTGGAACGCACAAAAGATCTTCCACATCGACCTGAGAGGTCCC
GCCAACCTCAACCCGCTCCGAGTGATCGAGGGAGTCCGGGATCTCAGCAAGAAACTCGTC
ATCGTGTGCGGGGAGGATCGACTGAGCAAGGAGGCGCAGAGCAACGCCACTCTGCTCTTC
AACGTTCATCTGAGATCCACGTTGTGCTCTCGGAGAGTTGCAGATGAGTTCCGACTCTCG
GCTGAAGCGTTTGAATGGATTCTGGGGGAAGTTGAAACTAAGTTCCAACAAGCTCAGGTT
CACCCTGGTGAGATGGTGGGTGCACTCGCTGCCCAGTCCCTGGGAGAACCCGCCACCCAG
ATGACCCTGAACACTTTCCACTACGCCGGTGTGTCGGCGAAGAACGTAACCCTCGGAGTA
CCCCGGTTGAAGGAGTTGATCAACGTATCGAAGAAACCCCGAACCCCCTCACTCACCATA
TACCTCGTGGGGCCGGCTACCAGGGATGCACAGCACTTCCAACCATTACCCACTCACAGG
ATGGTGTTGTGTCGTCTGGAGCACGCCACCCTCCGCAAGGTGACGGCGAACACGGCGATC
TACTACGATCCGGACCCCATGAGCACAGTCATCCAGGAGGACCAGGAATTCGTCAATGTC
TATTACGAGATGCCGGACTTTGATGTTACAAGGATTTCATCGTGGCTGCTCCGTATTGAA
CTCGACCGGAAGAGAATGACAGACAAGAAACTGAGTATGGAGCAAATTGCGGAGAAGATC
AGTGCTGGGTTCGGTGACGATTTGAATTGTATTTTCAATGACGACAATGCAGAGAAGCTG
GTATTACGAATTCGTATTATGAACAGTGAGGAGCAGAAGACTGATGACGGATCGGATGAG
CAAGCTGATAAGATGGAGGATGACGTCTTCCTCCGATACATTGAAGCTAATATGCTTACC
GACATGACTCTACAGGGAATTCCACAAATTGCAAAGCGAATCGTTATTACAAAGGAGGGG
GAGTTTAACGCCGTTCAAGATTGGATTTTGGAAACCGACGGCACAGCTCTGATGAGGATT
TTATCGGAGCGCGATATCGACCCGGTCCGAACCACCTCCAACGACATCTGCGAGATTTTC
GCTGTCCTCGGTATTGAAGCTGTGCGGAAAGCTCTGGAACGGGAAATTAACCACGTCATT
TCCTTTGACGGTTCCTACGTCAACTACCGTCATCTTGCGCTGCTGTGTGAGGTCATGACT
TCAAAGGGACATTTGATGGCGATCACGAGACACGGGATAAATCGGCAAGAGACAGGCGCA
CTCATGAGATGCTCCTTTGAAGAGACAGTCGATATTTTAATGGAGGCTGCATCATCGGCA
GAAACTGACCACATGGATGGCGTGTCGGAAAACATAATGTTGGGCCAGTTGGTACCGGGT
GGAACCGGTTGCTTCGGCTTACTGCTCGATGCAGAGAAGTGCACCTATGCCATGGAGATA
CCAACCAACATTGGAGGAGTTGGGGGCACTGGAATGTTCTATGGATCGATGGCTTCGCCG
AGCTCCATGTCTCCCGCCATGACCCCATGGAACAGCGGGGCTGCTACCCCTGGATTCATG
GGCTCCTTCACCCCCGGAGCCCTGCTCAGTCCCCTGGGCCCCGGCAGCCCATCATCTCCC
TATATCCCGTCACCCAAACACTCTGCGATGTCACCCAGCTATTCCCCAGTATCCCCAGCT
TACGAACCAGGGACTCCGGGCACCCCACAAAGCCCCAGTTACACCCCAACAAGTCCAACA
TATTCACCCACCTCACCTCGGTATTCCCCAACCAGCCCCAGCTACAGCCCCACATCACCC
AGCTATTCACCCACGTCACCCTCCTACAGCCCCACGTCTCCATCTTATTCACCCACAAGT
CCATCCTATTCACCCACCTCTCCAAGTTACAGTCCTACTTCACCGAGTTACAGCCCCACT
TCACCCAGCTACTCCCCAACCTCACCCTCATATAGCCCCACTTCTCCAAGCTACAGCCCC
ACATCCCCAAGTTATTCACCCACCAGCCCATCTTACTCTCCAACAAGCCCCAGTTACTCT
CCAACCTCCCCCAGCTATTCACCCACATCACCCAGTTACAGCCCCACATCACCCTCATAT
AACCCAACCAGTCCATCGTACTCCCCAACAAGCCCCTCTTATTCACCTGCAAGCCCCAGT
TACTCCCCTACCTCCCCAAGTTACAGTCCAGCGTCACCCAGCTACTCACCCTCAAGCCCC
AAATACTCCCCAGCCAGCCCATCTTACAGTCCAGCATCCCCCGAATACAGCCCATCAAGC
CCCAAGTACGCCCCGTCATCTCCATCCTACTCGCCAGCTTCACCCTCCTACAGCCCATCT
TCACCCAGTTATTCCCCATCCAGCCCGAAATATTCTCCGTCAAGCCCCTCATATTCTCCA
GCAAGCCCTTCATACTCACCCACC

InterProScan

Pfam	RNA_pol_Rpb1_1 (IPR007080) - T[14-207] 5.0E-46 - T[215-297] 3.2E-30
SMART	RNA_pol_N (IPR006592) - T[210-492] 8.8E-170
Pfam	RNA_pol_asu (IPR000722) - T[299-464] 3.9E-75
Pfam	RNA_pol_Rpb1_3 (IPR007066) - T[468-635] 1.8E-50
Gene3D	Rpb1_funnel_sf (IPR038120) - T[630-771] 4.0E-50
Pfam	RNA_pol_Rpb1_4 (IPR007083) - T[662-762] 1.0E-35
Pfam	RNA_pol_Rpb1_5 (IPR007081) - T[769-1360] 5.8E-97
Pfam	RNA_pol_Rpb1_6 (IPR007075) - T[835-1018] 6.4E-67
Gene3D	RNA_pol_Rpb1_7_sf (IPR038593) - T[1109-1246] 4.1E-56
Pfam	RNA_pol_Rpb1_7 (IPR007073) - T[1109-1245] 1.5E-55
Pfam	RNA_pol_II_repeat_euk (IPR000684) - T[1495-1507] 1.4 - T[1509-1521] 6.6 - T[1522-1535] 0.021 - T[1536-1549] 0.42 - T[1543-1556] 0.54 - T[1550-1563] 0.48 - T[1557-1570] 0.61 - T[1564-1577] 0.54 - T[1571-1584] 0.61 - T[1578-1591] 0.53 - T[1585-1598] 0.57 - T[1592-1605] 0.54 - T[1599-1612] 0.61 - T[1606-1619] 0.5 - T[1613-1626] 0.58 - T[1627-1640] 0.54 - T[1641-1654] 1.1 - T[1655-1668] 0.87 - T[1669-1682] 1.4 - T[1683-1696] 1.4
ProSitePatterns	RNA_pol_II_repeat_euk (IPR000684) - T[1514-1520] . - T[1528-1534] . - T[1535-1541] . - T[1549-1555] . - T[1556-1562] . - T[1563-1569] . - T[1570-1576] . - T[1584-1590] . - T[1591-1597] . - T[1598-1604] . - T[1605-1611] . - T[1619-1625] . - T[1626-1632] . - T[1633-1639] . - T[1661-1667] . - T[1675-1681] . - T[1717-1723] . - T[1724-1730] . - T[1731-1737] .