- Clone 'AJ494088' >
- Molecular Tool 'RafΔEx9 mRNA (Tokuoka 2018)' >
- Transcript 'KH2012:KH.L170.28.v5...' >
- Transcript 'KH2012:KH.L18.107.v1...' >
- Transcript 'Cisavi.CG.ENS81.R67....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R67.1507499-1523609.14372.t
Possible name(s)
POLR1A; POLR2A; POLR3A
Gene model
Location
R67 [1,507,639 / 1,523,285]
>Cisavi.CG.ENS81.R67.1507499-1523609.14372.p
KTMALTESSVDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVTEGGRPKMLGLMDPRQG
VVDRMSRCQTCASNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCSRLLVEKVC
GHNYKYTMSEKKTRKNKDNRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKVGHG
GCGRYQPKIRRNGMELVAEWKHVNEDSQEKKIVVSAERVHEIFKRISDEESDILGMDPRF
ARPEWMINTVIPVPPLCVRPSVTMGGTSARSQDDLTHKLADIIKANQQLKRNEQNGTASH
IILEDVKLLQYHVATLCDNDMPGVPKALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDF
SARTVITPDPNLKIDEVGVPRSIACNLTYPEIVTPFNIDRMQELVRRGNNQYPGAKYIIR
DGGDRIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVRVLPWST
FRMNLSVTTPYNADFDGDEMNMHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGIVQDT
LTAVRKMTKRDSFIEKADFMNLLMYLGDWDGYLPQPAILKPKPLWTGKQIFSLIIPPGIN
CIRNHSTHPDGEDTGPYKHISPGDTRVLVENGILLSGIICKKSLGTSAGSLCHVVALEKS
ADVCREFYSNIQTVVNNWLMIEGHSIGIGDTIADAQTYQDIQNQIRKAKQEVIERKLTKK
IYNPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINISQ
VIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAMGG
REGLIDTAVKTAETGYIQRRLVKAMEAVMVRYDGTIRQCNDYMIQLCYGEDGLAGEKVEF
QNLATLKPSHKTFDKKFRFDYTKERYMRRCLNEDIVRMIQTDVSIQQELDGEFDQLQQDR
ENIRAIFPTGDSKVVLPVNLGRLIWNAQKIFHIDLRGPANLNPLRVIEGVRDLSKKLVIV
CGEDRLSKEAQSNATLLFNVHLRSTLCSRRVADEFRLSAEAFEWILGEVETKFQQAQVHP
GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPRTPSLTIYL
VGPATRDAQHFQPLPTHRMVLCRLEHATLRKVTANTAIYYDPDPMSTVIQEDQEFVNVYY
EMPDFDVTRISSWLLRIELDRKRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDNAEKLVL
RIRIMNSEEQKTDDGSDEQADKMEDDVFLRYIEANMLTDMTLQGIPQIAKVNLGQIKKNF
MYDEGEFNAVQDWILETDGTALMRILSERDIDPVRTTSNDICEIFAVLGIEAVRKALERE
INHVISFDGSYVNYRHLALLCEVMTSKGHLMAITRHGINRQETGALMRCSFEETVDILME
AASSAETDHMDGVSENIMLGQLVPGGTGCFGLLLDAEKCTYAMEIPTNIGGVGGSSMSPA
MTPWNSGAATPGFMGSFTPGGFGSGMTPSAASFSPAPTESAGFSPGYSPAWSPAHPSYTP
TSPTYSPTSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYNPTSPSYSPTSPSYSPASPSYSPTSPSYSPASPSYSPSSPKYSPASPSYSPASPEY
SPSSPKYAPSSPSYSPASPSYSPSSPSYSPSSPKYSPSSPSYSPASPSYSPTSPSYSPTS
PSYSPTSPGYSPSSPSYSPSSPGASSP
>Cisavi.CG.ENS81.R67.1507499-1523609.14372.t
AAAACCATGGCACTCACAGAATCTAGTGTGGATCTAAAACTTGTTAAACGAGTTCAGTTT
GGAATCCTCAGCCCAGATGAAATTAAACGAATGTCGGTGACGGAGGGTGGGGTTCAGTAC
CCTGAGGTGACGGAAGGGGGAAGACCCAAGATGTTGGGTCTGATGGATCCCCGTCAAGGC
GTGGTTGATAGAATGTCCAGGTGTCAGACTTGCGCCAGCAACATGACCGACTGTCCCGGA
CACTTCGGACATATTGAACTTGCACGACCCGTGTTTCATGTTGGATTTCTTACAAAAACC
ATCAAAATACTTCGTTGTGTGTGCTACTACTGCTCGAGGCTACTTGTGGAAAAGGTGTGT
GGTCATAATTATAAATATACAATGAGTGAGAAAAAAACAAGGAAAAATAAGGATAATAGA
CTCGCGCATGTGTACGAGTTGTGCAAAGGGAAGAACATCTGCGAAGGAGGGGAGGAGATG
GACAACACCTTCGATGTTCAACAGCGTGATGAAGATGAACCGAGGAAAGTGGGGCATGGT
GGCTGTGGTCGTTACCAACCAAAGATCCGACGAAACGGGATGGAACTGGTTGCCGAGTGG
AAACACGTCAACGAGGATTCGCAGGAGAAGAAGATCGTTGTCTCAGCTGAGCGTGTTCAT
GAGATATTTAAGAGAATCTCCGACGAGGAATCTGACATCCTCGGCATGGACCCAAGGTTT
GCTCGTCCCGAATGGATGATTAACACCGTGATACCTGTTCCCCCACTGTGTGTACGTCCA
TCCGTCACTATGGGAGGCACCAGTGCGAGAAGTCAGGATGATTTAACGCACAAGTTGGCT
GACATTATTAAAGCCAACCAACAGTTAAAACGAAATGAACAAAACGGAACTGCCTCCCAT
ATTATATTAGAAGATGTGAAGTTACTACAGTACCATGTTGCTACACTGTGTGATAACGAT
ATGCCTGGAGTTCCCAAGGCGTTGCAAAAATCCGGTCGCCCTTTGAAATCGATCAAACAG
CGTCTGAAAGCAAAGGAGGGTAGGATAAGAGGGAACTTGATGGGTAAGCGGGTGGACTTC
TCCGCTCGTACCGTCATTACCCCTGACCCCAATCTTAAAATTGATGAGGTTGGTGTGCCA
CGCTCCATCGCATGCAACCTGACGTACCCCGAGATCGTCACCCCATTCAACATCGATCGG
ATGCAGGAACTTGTTCGACGGGGGAACAACCAGTACCCCGGGGCGAAATACATCATCCGA
GACGGTGGGGATCGTATCGACCTCCGGTATCACCCCAAACCCTCCGATCTGCATCTGCAA
GTGGGCTACAAGGTTGAGCGGCACATAAAAGATGGCGACGTGATTGTGTTCAACCGACAG
CCCACTCTGCACAAGATGTCCATGATGGGACATAAAGTCAGAGTTCTGCCCTGGTCTACT
TTTAGAATGAATTTATCGGTAACGACGCCGTACAACGCTGATTTCGATGGAGACGAGATG
AACATGCACGTCCCGCAAACCATGGAAACGAGAGCCGAGATCCTCCAACTCGCCATGGTG
AACCGGATGATCATCACTCCACAGAGCAATCGGCCGGTCATGGGAATTGTGCAGGACACA
CTGACCGCCGTCCGCAAAATGACCAAGCGGGATTCCTTCATTGAAAAGGCCGACTTCATG
AACCTGTTAATGTACCTGGGTGATTGGGACGGGTACCTCCCCCAACCTGCGATCCTCAAA
CCCAAGCCTCTCTGGACGGGGAAGCAGATCTTCTCGCTCATCATCCCCCCTGGGATAAAC
TGCATCCGGAACCACAGCACCCATCCTGATGGGGAGGACACTGGACCTTATAAGCACATC
TCACCCGGGGATACAAGGGTGCTGGTGGAGAACGGTATCTTGCTGAGCGGAATAATATGT
AAGAAGTCGCTGGGTACGTCTGCGGGGTCTCTATGTCACGTGGTTGCACTGGAGAAATCT
GCCGATGTGTGCCGAGAGTTCTATAGCAATATACAGACTGTGGTGAACAACTGGTTGATG
ATTGAGGGACATTCCATCGGTATCGGAGATACCATTGCCGATGCACAAACCTACCAAGAT
ATTCAAAACCAGATCAGGAAAGCAAAGCAGGAAGTCATAGAGAGAAAGCTCACAAAGAAG
ATTTACAACCCCACTCCTGGTAATACTCTGCGGCAGACATTTGAAAATCAAGTCAACAGG
ATTCTGAACGATGCCCGTGACAAAACTGGTTCATCTGCTCAGAAGAGTTTATCAGACTTC
AACAACTTTAAAGCTATGGTGGTGGCTGGCTCTAAAGGGTCCAAAATCAACATCTCCCAG
GTTATTGCTGTTGTGGGTCAACAGAACGTGGAAGGAAAGCGGATCCCATTTGGGTTTCGT
CACCGAACCCTGCCCCATTTTATTAAGGATGATTATGGTCCAGAGGCTCGTGGGTTTGTG
GAGAACTCGTACCTTGCTGGGTTGACCCCAACCGAGTTTTACTTCCATGCCATGGGAGGT
AGAGAGGGTCTCATCGATACTGCTGTCAAAACTGCCGAAACTGGTTACATCCAGCGTCGA
CTGGTGAAAGCCATGGAAGCGGTTATGGTGCGATACGACGGCACGATACGACAATGTAAC
GATTACATGATCCAGCTCTGCTACGGGGAAGATGGCTTGGCTGGGGAAAAGGTGGAGTTC
CAGAACCTCGCCACGCTTAAACCAAGCCACAAAACCTTCGACAAGAAATTCCGATTCGAC
TACACCAAGGAGCGATACATGCGTCGATGTTTGAACGAGGATATCGTCCGAATGATCCAG
ACCGACGTCTCCATCCAACAGGAGCTCGATGGCGAGTTCGACCAGTTACAGCAGGACAGG
GAAAATATTCGAGCCATTTTTCCAACCGGGGACAGCAAGGTTGTATTACCCGTCAACTTG
GGCCGATTGATCTGGAACGCACAAAAGATCTTCCACATCGACCTGAGAGGTCCCGCCAAC
CTCAACCCGCTCCGAGTGATCGAGGGAGTCCGGGATCTCAGCAAGAAACTCGTCATCGTG
TGCGGGGAGGATCGACTGAGCAAGGAGGCGCAGAGCAACGCCACTCTGCTCTTCAACGTT
CATCTGAGATCCACGTTGTGCTCTCGGAGAGTTGCAGATGAGTTCCGACTCTCGGCTGAA
GCGTTTGAATGGATTCTGGGGGAAGTTGAAACTAAGTTCCAACAAGCTCAGGTTCACCCT
GGTGAGATGGTGGGTGCACTCGCTGCCCAGTCCCTGGGAGAACCCGCCACCCAGATGACC
CTGAACACTTTCCACTACGCCGGTGTGTCGGCGAAGAACGTAACCCTCGGAGTACCCCGG
TTGAAGGAGTTGATCAACGTATCGAAGAAACCCCGAACCCCCTCACTCACCATATACCTC
GTGGGGCCGGCTACCAGGGATGCACAGCACTTCCAACCATTACCCACTCACAGGATGGTG
TTGTGTCGTCTGGAGCACGCCACCCTCCGCAAGGTGACGGCGAACACGGCGATCTACTAC
GATCCGGACCCCATGAGCACAGTCATCCAGGAGGACCAGGAATTCGTCAATGTCTATTAC
GAGATGCCGGACTTTGATGTTACAAGGATTTCATCGTGGCTGCTCCGTATTGAACTCGAC
CGGAAGAGAATGACAGACAAGAAACTGAGTATGGAGCAAATTGCGGAGAAGATCAGTGCT
GGGTTCGGTGACGATTTGAATTGTATTTTCAATGACGACAATGCAGAGAAGCTGGTATTA
CGAATTCGTATTATGAACAGTGAGGAGCAGAAGACTGATGACGGATCGGATGAGCAAGCT
GATAAGATGGAGGATGACGTCTTCCTCCGATACATTGAAGCTAATATGCTTACCGACATG
ACTCTACAGGGAATTCCACAAATTGCAAAGGTGAATTTAGGACAAATAAAAAAAAATTTT
ATGTATGATGAGGGGGAGTTTAACGCCGTTCAAGATTGGATTTTGGAAACCGACGGCACA
GCTCTGATGAGGATTTTATCGGAGCGCGATATCGACCCGGTCCGAACCACCTCCAACGAC
ATCTGCGAGATTTTCGCTGTCCTCGGTATTGAAGCTGTGCGGAAAGCTCTGGAACGGGAA
ATTAACCACGTCATTTCCTTTGACGGTTCCTACGTCAACTACCGTCATCTTGCGCTGCTG
TGTGAGGTCATGACTTCAAAGGGACATTTGATGGCGATCACGAGACACGGGATAAATCGG
CAAGAGACAGGCGCACTCATGAGATGCTCCTTTGAAGAGACAGTCGATATTTTAATGGAG
GCTGCATCATCGGCAGAAACTGACCACATGGATGGCGTGTCGGAAAACATAATGTTGGGC
CAGTTGGTACCGGGTGGAACCGGTTGCTTCGGCTTACTGCTCGATGCAGAGAAGTGCACC
TATGCCATGGAGATACCAACCAACATTGGAGGAGTTGGGGGTAGCTCCATGTCTCCCGCC
ATGACCCCATGGAACAGCGGGGCTGCTACCCCTGGATTCATGGGCTCCTTCACCCCCGGA
GGTTTTGGCTCCGGAATGACCCCCAGTGCCGCATCGTTCTCCCCCGCACCCACCGAAAGC
GCTGGCTTCTCACCCGGCTACAGCCCTGCATGGAGCCCTGCTCACCCCAGTTACACCCCA
ACAAGTCCAACATATTCACCCACCTCACCTCGGTATTCCCCAACCAGCCCCAGCTACAGC
CCCACATCACCCAGCTATTCACCCACGTCACCCTCCTACAGCCCCACGTCTCCATCTTAT
TCACCCACAAGTCCATCCTATTCACCCACCTCTCCAAGTTACAGTCCTACTTCACCGAGT
TACAGCCCCACTTCACCCAGCTACTCCCCAACCTCACCCTCATATAGCCCCACTTCTCCA
AGCTACAGCCCCACATCCCCAAGTTATTCACCCACCAGCCCATCTTACTCTCCAACAAGC
CCCAGTTACTCTCCAACCTCCCCCAGCTATTCACCCACATCACCCAGTTACAGCCCCACA
TCACCCTCATATAACCCAACCAGTCCATCGTACTCCCCAACAAGCCCCTCTTATTCACCT
GCAAGCCCCAGTTACTCCCCTACCTCCCCAAGTTACAGTCCAGCGTCACCCAGCTACTCA
CCCTCAAGCCCCAAATACTCCCCAGCCAGCCCATCTTACAGTCCAGCATCCCCCGAATAC
AGCCCATCAAGCCCCAAGTACGCCCCGTCATCTCCATCCTACTCGCCAGCTTCACCCTCC
TACAGCCCATCTTCACCCAGTTATTCCCCATCCAGCCCGAAATATTCTCCGTCAAGCCCC
TCATATTCTCCAGCAAGCCCTTCATACTCACCCACCAGCCCCTCATATTCACCTACAAGC
CCCTCGTACTCTCCAACGAGCCCCGGGTATTCACCTTCCTCACCCAGCTACTCCCCATCA
AGTCCAGGAGCTTCCAGTCCA
Pfam |
RNA_pol_Rpb1_1 (IPR007080) - T[13-353] 6.7E-107 |
SMART |
RNA_pol_N (IPR006592) - T[244-548] 3.3E-198 |
Pfam |
RNA_pol_asu (IPR000722) - T[355-520] 4.2E-75 |
Pfam |
RNA_pol_Rpb1_3 (IPR007066) - T[524-691] 1.9E-50 |
Gene3D |
Rpb1_funnel_sf (IPR038120) - T[686-829] 1.3E-49 |
Pfam |
RNA_pol_Rpb1_4 (IPR007083) - T[719-820] 7.5E-36 |
Pfam |
RNA_pol_Rpb1_5 (IPR007081) - T[827-1425] 3.0E-96 |
Pfam |
RNA_pol_Rpb1_6 (IPR007075) - T[893-1076] 6.8E-67 |
Pfam |
RNA_pol_Rpb1_7 (IPR007073) - T[1167-1303] 1.6E-55 |
Gene3D |
RNA_pol_Rpb1_7_sf (IPR038593) - T[1167-1304] 4.3E-56 |
Pfam |
RNA_pol_II_repeat_euk (IPR000684) - T[1566-1579] 0.028 - T[1573-1586] 0.57 - T[1580-1593] 0.51 - T[1587-1600] 0.61 - T[1594-1607] 0.53 - T[1601-1614] 0.64 - T[1608-1621] 0.56 - T[1615-1628] 0.62 - T[1622-1635] 0.59 - T[1629-1642] 0.68 - T[1636-1649] 0.59 - T[1643-1656] 0.66 - T[1657-1670] 0.57 - T[1671-1684] 0.5 - T[1685-1698] 1.4 - T[1699-1712] 3.4 - T[1713-1726] 1.5 - T[1727-1740] 1.5 - T[1783-1796] 3.4 - T[1797-1810] 0.16 |
ProSitePatterns |
RNA_pol_II_repeat_euk (IPR000684) - T[1579-1585] . - T[1586-1592] . - T[1593-1599] . - T[1600-1606] . - T[1614-1620] . - T[1621-1627] . - T[1628-1634] . - T[1635-1641] . - T[1649-1655] . - T[1656-1662] . - T[1663-1669] . - T[1670-1676] . - T[1705-1711] . - T[1719-1725] . - T[1796-1802] . - T[1810-1816] . |
Protein Name | Identity | Bit Score | e-value |
---|---|---|---|
RPA1_HUMAN | 32.772 % | 333 | 1.35E-92 |
RPC1_HUMAN | 36.728 % | 565 | 5.92E-174 |
RPB1_HUMAN | 73.779 % | 2510 | 0 |