- Transcript 'Cisavi.CG.ENS81.R67....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R67.1507499-1523609.14373.t
Possible name(s)
POLR1A; POLR2A; POLR3A
Gene model
Location
R67 [1,507,645 / 1,523,186]
Amino acid sequence
Length: 1,806
>Cisavi.CG.ENS81.R67.1507499-1523609.14373.p
MALTESSVDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVTEGGRPKMLGLMDPRQGVV
DRMSRCQTCASNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCSRLLVEKGNPK
IRQIMAKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKVGHGGCGRY
QPKIRRNGMELVAEWKHVNEDSQEKKIVVSAERVHEIFKRISDEESDILGMDPRFARPEW
MINTVIPVPPLCVRPSVTMGGTSARSQDDLTHKLADIIKANQQLKRNEQNGTASHIILED
VKLLQYHVATLCDNDMPGVPKALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSARTV
ITPDPNLKIDEVGVPRSIACNLTYPEIVTPFNIDRMQELVRRGNNQYPGAKYIIRDGGDR
IDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVRVLPWSTFRMNL
SVTTPYNADFDGDEMNMHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGIVQDTLTAVR
KMTKRDSFIEKADFMNLLMYLGDWDGYLPQPAILKPKPLWTGKQIFSLIIPPGINCIRNH
STHPDGEDTGPYKHISPGDTRVLVENGILLSGIICKKSLGTSAGSLCHVVALEKSADVCR
EFYSNIQTVVNNWLMIEGHSIGIGDTIADAQTYQDIQNQIRKAKQEVIEVSRFGLDFRMS
KIYNPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAMG
GREGLIDTAVKTAETGYIQRRLVKAMEAVMVRYDGTIRQCNDYMIQLCYGEDGLAGEKVE
FQNLATLKPSHKTFDKKFRFDYTKERYMRRCLNEDIVRMIQTDVSIQQELDGEFDQLQQD
RENIRAIFPTGDSKVVLPVNLGRLIWNAQKIFHIDLRGPANLNPLRVIEGVRDLSKKLVI
VCGEDRLSKEAQSNATLLFNVHLRSTLCSRRVADEFRLSAEAFEWILGEVETKFQQAQVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPRTPSLTIY
LVGPATRDAQRCKVRDLNHATLRKVTANTAIYYDPDPMSTVIQEDQEFVNVYYEMPDFDV
TRISSWLLRIELDRKRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDNAEKLVLRIRIMNR
SVSLQLVSYVFNLFPNLTHGLLTHINSTSIASLTISSCSEEQKTDDGSDEQADKMEDDVF
LRYIEANMLTDMTLQGIPQIAKVYMHLPKEENKKRIVITKEGEFNAVQDWILETDGTALM
RILSERDIDPVRTTSNDICEIFAVLGIEAVRKALEREINHVISFDGSYVNYRHLALLCEV
MTSKGHLMAITRHGINRQETGALMRCSFEETVDILMEAASSAETDHMDGVSENIMLGQLV
PGGTGCFGLLLDAEKCTYAMEIPTNIGGVGGSPSSPYIPSPKHSAMSPSYSPVSPAYEPG
TPGTPQSPSYTPTSPTYSPTSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYNPTSPSYSPTSPSYSPASPSYSPTSPSYSPASPSYSPSSPKYSP
ASPSYSPASPEYSPSSPKYAPSSPSYSPASPSYSPSSPSYSPSSPKYSPSSPSYSPASPS
YSPTSP
Nucleotide sequence
Length: 5,418
>Cisavi.CG.ENS81.R67.1507499-1523609.14373.t
ATGGCACTCACAGAATCTAGTGTGGATCTAAAACTTGTTAAACGAGTTCAGTTTGGAATC
CTCAGCCCAGATGAAATTAAACGAATGTCGGTGACGGAGGGTGGGGTTCAGTACCCTGAG
GTGACGGAAGGGGGAAGACCCAAGATGTTGGGTCTGATGGATCCCCGTCAAGGCGTGGTT
GATAGAATGTCCAGGTGTCAGACTTGCGCCAGCAACATGACCGACTGTCCCGGACACTTC
GGACATATTGAACTTGCACGACCCGTGTTTCATGTTGGATTTCTTACAAAAACCATCAAA
ATACTTCGTTGTGTGTGCTACTACTGCTCGAGGCTACTTGTGGAAAAGGGAAACCCCAAA
ATCCGTCAAATCATGGCGAAATCGAAGGGTCAGCCGAGGAAGAGACTCGCGCATGTGTAC
GAGTTGTGCAAAGGGAAGAACATCTGCGAAGGAGGGGAGGAGATGGACAACACCTTCGAT
GTTCAACAGCGTGATGAAGATGAACCGAGGAAAGTGGGGCATGGTGGCTGTGGTCGTTAC
CAACCAAAGATCCGACGAAACGGGATGGAACTGGTTGCCGAGTGGAAACACGTCAACGAG
GATTCGCAGGAGAAGAAGATCGTTGTCTCAGCTGAGCGTGTTCATGAGATATTTAAGAGA
ATCTCCGACGAGGAATCTGACATCCTCGGCATGGACCCAAGGTTTGCTCGTCCCGAATGG
ATGATTAACACCGTGATACCTGTTCCCCCACTGTGTGTACGTCCATCCGTCACTATGGGA
GGCACCAGTGCGAGAAGTCAGGATGATTTAACGCACAAGTTGGCTGACATTATTAAAGCC
AACCAACAGTTAAAACGAAATGAACAAAACGGAACTGCCTCCCATATTATATTAGAAGAT
GTGAAGTTACTACAGTACCATGTTGCTACACTGTGTGATAACGATATGCCTGGAGTTCCC
AAGGCGTTGCAAAAATCCGGTCGCCCTTTGAAATCGATCAAACAGCGTCTGAAAGCAAAG
GAGGGTAGGATAAGAGGGAACTTGATGGGTAAGCGGGTGGACTTCTCCGCTCGTACCGTC
ATTACCCCTGACCCCAATCTTAAAATTGATGAGGTTGGTGTGCCACGCTCCATCGCATGC
AACCTGACGTACCCCGAGATCGTCACCCCATTCAACATCGATCGGATGCAGGAACTTGTT
CGACGGGGGAACAACCAGTACCCCGGGGCGAAATACATCATCCGAGACGGTGGGGATCGT
ATCGACCTCCGGTATCACCCCAAACCCTCCGATCTGCATCTGCAAGTGGGCTACAAGGTT
GAGCGGCACATAAAAGATGGCGACGTGATTGTGTTCAACCGACAGCCCACTCTGCACAAG
ATGTCCATGATGGGACATAAAGTCAGAGTTCTGCCCTGGTCTACTTTTAGAATGAATTTA
TCGGTAACGACGCCGTACAACGCTGATTTCGATGGAGACGAGATGAACATGCACGTCCCG
CAAACCATGGAAACGAGAGCCGAGATCCTCCAACTCGCCATGGTGAACCGGATGATCATC
ACTCCACAGAGCAATCGGCCGGTCATGGGAATTGTGCAGGACACACTGACCGCCGTCCGC
AAAATGACCAAGCGGGATTCCTTCATTGAAAAGGCCGACTTCATGAACCTGTTAATGTAC
CTGGGTGATTGGGACGGGTACCTCCCCCAACCTGCGATCCTCAAACCCAAGCCTCTCTGG
ACGGGGAAGCAGATCTTCTCGCTCATCATCCCCCCTGGGATAAACTGCATCCGGAACCAC
AGCACCCATCCTGATGGGGAGGACACTGGACCTTATAAGCACATCTCACCCGGGGATACA
AGGGTGCTGGTGGAGAACGGTATCTTGCTGAGCGGAATAATATGTAAGAAGTCGCTGGGT
ACGTCTGCGGGGTCTCTATGTCACGTGGTTGCACTGGAGAAATCTGCCGATGTGTGCCGA
GAGTTCTATAGCAATATACAGACTGTGGTGAACAACTGGTTGATGATTGAGGGACATTCC
ATCGGTATCGGAGATACCATTGCCGATGCACAAACCTACCAAGATATTCAAAACCAGATC
AGGAAAGCAAAGCAGGAAGTCATAGAGGTGAGCAGATTTGGATTGGATTTCCGCATGTCT
AAGATTTACAACCCCACTCCTGGTAATACTCTGCGGCAGACATTTGAAAATCAAGTCAAC
AGGATTCTGAACGATGCCCGTGACAAAACTGGTTCATCTGCTCAGAAGAGTTTATCAGAC
TTCAACAACTTTAAAGCTATGGTGGTGGCTGGCTCTAAAGGGTCCAAAATCAACATCTCC
CAGGTTATTGCTGTTGTGGGTCAACAGAACGTGGAAGGAAAGCGGATCCCATTTGGGTTT
CGTCACCGAACCCTGCCCCATTTTATTAAGGATGATTATGGTCCAGAGGCTCGTGGGTTT
GTGGAGAACTCGTACCTTGCTGGGTTGACCCCAACCGAGTTTTACTTCCATGCCATGGGA
GGTAGAGAGGGTCTCATCGATACTGCTGTCAAAACTGCCGAAACTGGTTACATCCAGCGT
CGACTGGTGAAAGCCATGGAAGCGGTTATGGTGCGATACGACGGCACGATACGACAATGT
AACGATTACATGATCCAGCTCTGCTACGGGGAAGATGGCTTGGCTGGGGAAAAGGTGGAG
TTCCAGAACCTCGCCACGCTTAAACCAAGCCACAAAACCTTCGACAAGAAATTCCGATTC
GACTACACCAAGGAGCGATACATGCGTCGATGTTTGAACGAGGATATCGTCCGAATGATC
CAGACCGACGTCTCCATCCAACAGGAGCTCGATGGCGAGTTCGACCAGTTACAGCAGGAC
AGGGAAAATATTCGAGCCATTTTTCCAACCGGGGACAGCAAGGTTGTATTACCCGTCAAC
TTGGGCCGATTGATCTGGAACGCACAAAAGATCTTCCACATCGACCTGAGAGGTCCCGCC
AACCTCAACCCGCTCCGAGTGATCGAGGGAGTCCGGGATCTCAGCAAGAAACTCGTCATC
GTGTGCGGGGAGGATCGACTGAGCAAGGAGGCGCAGAGCAACGCCACTCTGCTCTTCAAC
GTTCATCTGAGATCCACGTTGTGCTCTCGGAGAGTTGCAGATGAGTTCCGACTCTCGGCT
GAAGCGTTTGAATGGATTCTGGGGGAAGTTGAAACTAAGTTCCAACAAGCTCAGGTTCAC
CCTGGTGAGATGGTGGGTGCACTCGCTGCCCAGTCCCTGGGAGAACCCGCCACCCAGATG
ACCCTGAACACTTTCCACTACGCCGGTGTGTCGGCGAAGAACGTAACCCTCGGAGTACCC
CGGTTGAAGGAGTTGATCAACGTATCGAAGAAACCCCGAACCCCCTCACTCACCATATAC
CTCGTGGGGCCGGCTACCAGGGATGCACAGCGTTGCAAGGTCCGGGATTTAAATCACGCC
ACCCTCCGCAAGGTGACGGCGAACACGGCGATCTACTACGATCCGGACCCCATGAGCACA
GTCATCCAGGAGGACCAGGAATTCGTCAATGTCTATTACGAGATGCCGGACTTTGATGTT
ACAAGGATTTCATCGTGGCTGCTCCGTATTGAACTCGACCGGAAGAGAATGACAGACAAG
AAACTGAGTATGGAGCAAATTGCGGAGAAGATCAGTGCTGGGTTCGGTGACGATTTGAAT
TGTATTTTCAATGACGACAATGCAGAGAAGCTGGTATTACGAATTCGTATTATGAACAGG
TCAGTATCGCTGCAATTAGTTTCTTATGTATTCAATTTATTCCCGAATTTAACACACGGC
CTGCTGACGCATATAAATAGTACTAGCATTGCCTCACTGACCATCTCATCTTGCAGTGAG
GAGCAGAAGACTGATGACGGATCGGATGAGCAAGCTGATAAGATGGAGGATGACGTCTTC
CTCCGATACATTGAAGCTAATATGCTTACCGACATGACTCTACAGGGAATTCCACAAATT
GCAAAGGTATACATGCACTTGCCAAAAGAAGAAAACAAAAAGCGAATCGTTATTACAAAG
GAGGGGGAGTTTAACGCCGTTCAAGATTGGATTTTGGAAACCGACGGCACAGCTCTGATG
AGGATTTTATCGGAGCGCGATATCGACCCGGTCCGAACCACCTCCAACGACATCTGCGAG
ATTTTCGCTGTCCTCGGTATTGAAGCTGTGCGGAAAGCTCTGGAACGGGAAATTAACCAC
GTCATTTCCTTTGACGGTTCCTACGTCAACTACCGTCATCTTGCGCTGCTGTGTGAGGTC
ATGACTTCAAAGGGACATTTGATGGCGATCACGAGACACGGGATAAATCGGCAAGAGACA
GGCGCACTCATGAGATGCTCCTTTGAAGAGACAGTCGATATTTTAATGGAGGCTGCATCA
TCGGCAGAAACTGACCACATGGATGGCGTGTCGGAAAACATAATGTTGGGCCAGTTGGTA
CCGGGTGGAACCGGTTGCTTCGGCTTACTGCTCGATGCAGAGAAGTGCACCTATGCCATG
GAGATACCAACCAACATTGGAGGAGTTGGGGGTAGCCCATCATCTCCCTATATCCCGTCA
CCCAAACACTCTGCGATGTCACCCAGCTATTCCCCAGTATCCCCAGCTTACGAACCAGGG
ACTCCGGGCACCCCACAAAGCCCCAGTTACACCCCAACAAGTCCAACATATTCACCCACC
TCACCTCGGTATTCCCCAACCAGCCCCAGCTACAGCCCCACATCACCCAGCTATTCACCC
ACGTCACCCTCCTACAGCCCCACGTCTCCATCTTATTCACCCACAAGTCCATCCTATTCA
CCCACCTCTCCAAGTTACAGTCCTACTTCACCGAGTTACAGCCCCACTTCACCCAGCTAC
TCCCCAACCTCACCCTCATATAGCCCCACTTCTCCAAGCTACAGCCCCACATCCCCAAGT
TATTCACCCACCAGCCCATCTTACTCTCCAACAAGCCCCAGTTACTCTCCAACCTCCCCC
AGCTATTCACCCACATCACCCAGTTACAGCCCCACATCACCCTCATATAACCCAACCAGT
CCATCGTACTCCCCAACAAGCCCCTCTTATTCACCTGCAAGCCCCAGTTACTCCCCTACC
TCCCCAAGTTACAGTCCAGCGTCACCCAGCTACTCACCCTCAAGCCCCAAATACTCCCCA
GCCAGCCCATCTTACAGTCCAGCATCCCCCGAATACAGCCCATCAAGCCCCAAGTACGCC
CCGTCATCTCCATCCTACTCGCCAGCTTCACCCTCCTACAGCCCATCTTCACCCAGTTAT
TCCCCATCCAGCCCGAAATATTCTCCGTCAAGCCCCTCATATTCTCCAGCAAGCCCTTCA
TACTCACCCACCAGCCCC
| Pfam |
RNA_pol_Rpb1_1 (IPR007080) - T[11-348] 1.8E-107 |
| SMART |
RNA_pol_N (IPR006592) - T[239-543] 3.3E-198 |
| Pfam |
RNA_pol_asu (IPR000722) - T[350-515] 4.1E-75 |
| Pfam |
RNA_pol_Rpb1_3 (IPR007066) - T[519-686] 1.9E-50 |
| Gene3D |
Rpb1_funnel_sf (IPR038120) - T[681-830] 5.6E-49 |
| Pfam |
RNA_pol_Rpb1_4 (IPR007083) - T[721-821] 9.8E-36 |
| Pfam |
RNA_pol_Rpb1_5 (IPR007081) - T[828-1462] 8.3E-98 |
| Pfam |
RNA_pol_Rpb1_6 (IPR007075) - T[894-1077] 6.7E-67 |
| Pfam |
RNA_pol_Rpb1_7 (IPR007073) - T[1160-1335] 4.4E-51 |
| Pfam |
RNA_pol_II_repeat_euk (IPR000684) - T[1551-1563] 1.8 - T[1565-1577] 6.9 - T[1578-1591] 0.021 - T[1592-1605] 0.45 - T[1599-1612] 0.57 - T[1606-1619] 0.49 - T[1613-1626] 0.59 - T[1620-1633] 0.53 - T[1627-1640] 0.63 - T[1634-1647] 0.55 - T[1641-1654] 0.65 - T[1648-1661] 0.55 - T[1655-1668] 0.63 - T[1662-1675] 0.52 - T[1669-1682] 0.59 - T[1683-1696] 0.54 - T[1697-1710] 1.2 - T[1711-1724] 3.3 - T[1725-1738] 1.5 - T[1739-1752] 1.5 |
| ProSitePatterns |
RNA_pol_II_repeat_euk (IPR000684) - T[1570-1576] . - T[1584-1590] . - T[1591-1597] . - T[1605-1611] . - T[1612-1618] . - T[1619-1625] . - T[1626-1632] . - T[1640-1646] . - T[1647-1653] . - T[1654-1660] . - T[1661-1667] . - T[1675-1681] . - T[1682-1688] . - T[1689-1695] . - T[1717-1723] . - T[1731-1737] . - T[1773-1779] . - T[1780-1786] . - T[1787-1793] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPA1_HUMAN | 32.619 % | 340 | 1.12E-94 |
| RPC1_HUMAN | 36.452 % | 566 | 2.16E-174 |
| RPB1_HUMAN | 72.512 % | 2506 | 0 |