Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 1,646

>Cisavi.CG.ENS81.R67.1507499-1523609.14374.p
LTESSVDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVTEGGRPKMLGLMDPRQGVVDR
MSRCQTCASNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCSRLLVEKGNPKIR
QIMAKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRNRPIGLKFHLPF
MLYLFKIKDFQQKNLLNTVTYLFNSVQLCILKKRISDEESDILGMDPRFARPEWMINTVI
PVPPLCVRPSVTMGGTSARSQDDLTHKLADIIKANQQLKRNEQNGTASHIILEDVKLLQY
HVATLCDNDMPGVPKVIALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSARTVITPD
PNLKIDEVGVPRSIACNLTYPEIVTPFNIDRMQELVRRGNNQYPGAKYIIRDGGDRIDLR
YHPKPSDLHLQVERHIKDGDVIVFNRQPTLHKMSMMGHKVRVLPWSTFRMNLSVTTPYNA
DFDGDEMNMHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGIVQDTLTAVRKMTKRDSF
IEKADFMNLLMYLGDWDGYLPQPAILKPKPLWTGKQIFSLIIPPGINCIRNHSTHPDGED
TGPYKHISPGDTRVLVENGILLSGIICKKSLGTSAGSLCHVVALEKSADVCREFYSNIQT
VVNNWLMIEGHSIGIGDTIADAQTYQDIQNQIRKAKQEVIEVSRFGLDFRMSKIYNPTPG
NTLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINISQVIAVVGQ
QNVEGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAMGGREGLIDT
AVKTAETGYIQRRLVKAMEAVMVRYDGTIRQCNDYMIQLCYGEDGLAGEKVEFQNLATLK
PSHKTFDKFIYLQITSNRFIHCHQKFRFDYTKERYMRRCLNEDIVRMIQTDVSIQQELDG
EFDQLQQDRENIRAIFPTGDSKVVLPVNLGRLIWNAQKIFHIDLRGPANLNPLRVIEGVR
DLSKKLVIVCGEDRLSKEAQSNATLLFNVHLRSTLCSRRVADEFRLSAEAFEWILGEVET
KFQQAQVHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKP
RTPSLTIYLVGPATRDAQRCKVRDLNHATLRKVTANTAIYYDPDPMSTVIQEDQEFVNVY
YEMPDFDVTRISSWLLRIELDRKRMTEAGITNSYYEQVSIAAISFLSLIVPSNLFPNLTH
GLLTHINSTSIASLTISSCSEEQKTDDGSDEQADKMEDDVFLRYIEANMLTDMTLQGIPQ
IAKRIVITKEGEFNAVQDWILETDGTALMRILSERDIDPVRTTSNDICEIFAVLGIEAVR
KALEREINHVISFDGSYVNYRHLALLCEVMTSKGHLMAITRHGINRQETGALMRCSFEET
VDILMEAASSAETDHMDGVSENIMLGQLVPGGTGCFGLLLDAENYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYNPTSPSYSPTSPSYSPASP
SYSPTSPSYSPASPSYSPSSPKYSPASPSYSPASPEYSPSSPKYAPSSPSYSPASPSYSP
SSPSYSPSSPKYSPSSPSYSPASPSY

Nucleotide sequence

Length: 4,938

>Cisavi.CG.ENS81.R67.1507499-1523609.14374.t
CTCACAGAATCTAGTGTGGATCTAAAACTTGTTAAACGAGTTCAGTTTGGAATCCTCAGC
CCAGATGAAATTAAACGAATGTCGGTGACGGAGGGTGGGGTTCAGTACCCTGAGGTGACG
GAAGGGGGAAGACCCAAGATGTTGGGTCTGATGGATCCCCGTCAAGGCGTGGTTGATAGA
ATGTCCAGGTGTCAGACTTGCGCCAGCAACATGACCGACTGTCCCGGACACTTCGGACAT
ATTGAACTTGCACGACCCGTGTTTCATGTTGGATTTCTTACAAAAACCATCAAAATACTT
CGTTGTGTGTGCTACTACTGCTCGAGGCTACTTGTGGAAAAGGGAAACCCCAAAATCCGT
CAAATCATGGCGAAATCGAAGGGTCAGCCGAGGAAGAGACTCGCGCATGTGTACGAGTTG
TGCAAAGGGAAGAACATCTGCGAAGGAGGGGAGGAGATGGACAACACCTTCGATGTTCAA
CAGCGTGATGAAGATGAACCGAGGAATAGGCCTATTGGTTTAAAATTTCATTTGCCATTT
ATGCTTTACCTTTTTAAAATCAAGGATTTTCAACAAAAAAACTTGTTAAATACTGTGACC
TATCTTTTTAATAGTGTGCAACTTTGCATACTAAAAAAAAGAATCTCCGACGAGGAATCT
GACATCCTCGGCATGGACCCAAGGTTTGCTCGTCCCGAATGGATGATTAACACCGTGATA
CCTGTTCCCCCACTGTGTGTACGTCCATCCGTCACTATGGGAGGCACCAGTGCGAGAAGT
CAGGATGATTTAACGCACAAGTTGGCTGACATTATTAAAGCCAACCAACAGTTAAAACGA
AATGAACAAAACGGAACTGCCTCCCATATTATATTAGAAGATGTGAAGTTACTACAGTAC
CATGTTGCTACACTGTGTGATAACGATATGCCTGGAGTTCCCAAGGTAATTGCGTTGCAA
AAATCCGGTCGCCCTTTGAAATCGATCAAACAGCGTCTGAAAGCAAAGGAGGGTAGGATA
AGAGGGAACTTGATGGGTAAGCGGGTGGACTTCTCCGCTCGTACCGTCATTACCCCTGAC
CCCAATCTTAAAATTGATGAGGTTGGTGTGCCACGCTCCATCGCATGCAACCTGACGTAC
CCCGAGATCGTCACCCCATTCAACATCGATCGGATGCAGGAACTTGTTCGACGGGGGAAC
AACCAGTACCCCGGGGCGAAATACATCATCCGAGACGGTGGGGATCGTATCGACCTCCGG
TATCACCCCAAACCCTCCGATCTGCATCTGCAAGTTGAGCGGCACATAAAAGATGGCGAC
GTGATTGTGTTCAACCGACAGCCCACTCTGCACAAGATGTCCATGATGGGACATAAAGTC
AGAGTTCTGCCCTGGTCTACTTTTAGAATGAATTTATCGGTAACGACGCCGTACAACGCT
GATTTCGATGGAGACGAGATGAACATGCACGTCCCGCAAACCATGGAAACGAGAGCCGAG
ATCCTCCAACTCGCCATGGTGAACCGGATGATCATCACTCCACAGAGCAATCGGCCGGTC
ATGGGAATTGTGCAGGACACACTGACCGCCGTCCGCAAAATGACCAAGCGGGATTCCTTC
ATTGAAAAGGCCGACTTCATGAACCTGTTAATGTACCTGGGTGATTGGGACGGGTACCTC
CCCCAACCTGCGATCCTCAAACCCAAGCCTCTCTGGACGGGGAAGCAGATCTTCTCGCTC
ATCATCCCCCCTGGGATAAACTGCATCCGGAACCACAGCACCCATCCTGATGGGGAGGAC
ACTGGACCTTATAAGCACATCTCACCCGGGGATACAAGGGTGCTGGTGGAGAACGGTATC
TTGCTGAGCGGAATAATATGTAAGAAGTCGCTGGGTACGTCTGCGGGGTCTCTATGTCAC
GTGGTTGCACTGGAGAAATCTGCCGATGTGTGCCGAGAGTTCTATAGCAATATACAGACT
GTGGTGAACAACTGGTTGATGATTGAGGGACATTCCATCGGTATCGGAGATACCATTGCC
GATGCACAAACCTACCAAGATATTCAAAACCAGATCAGGAAAGCAAAGCAGGAAGTCATA
GAGGTGAGCAGATTTGGATTGGATTTCCGCATGTCTAAGATTTACAACCCCACTCCTGGT
AATACTCTGCGGCAGACATTTGAAAATCAAGTCAACAGGATTCTGAACGATGCCCGTGAC
AAAACTGGTTCATCTGCTCAGAAGAGTTTATCAGACTTCAACAACTTTAAAGCTATGGTG
GTGGCTGGCTCTAAAGGGTCCAAAATCAACATCTCCCAGGTTATTGCTGTTGTGGGTCAA
CAGAACGTGGAAGGAAAGCGGATCCCATTTGGGTTTCGTCACCGAACCCTGCCCCATTTT
ATTAAGGATGATTATGGTCCAGAGGCTCGTGGGTTTGTGGAGAACTCGTACCTTGCTGGG
TTGACCCCAACCGAGTTTTACTTCCATGCCATGGGAGGTAGAGAGGGTCTCATCGATACT
GCTGTCAAAACTGCCGAAACTGGTTACATCCAGCGTCGACTGGTGAAAGCCATGGAAGCG
GTTATGGTGCGATACGACGGCACGATACGACAATGTAACGATTACATGATCCAGCTCTGC
TACGGGGAAGATGGCTTGGCTGGGGAAAAGGTGGAGTTCCAGAACCTCGCCACGCTTAAA
CCAAGCCACAAAACCTTCGACAAGTTTATTTATTTGCAAATCACGTCTAATCGATTTATT
CATTGCCACCAGAAATTCCGATTCGACTACACCAAGGAGCGATACATGCGTCGATGTTTG
AACGAGGATATCGTCCGAATGATCCAGACCGACGTCTCCATCCAACAGGAGCTCGATGGC
GAGTTCGACCAGTTACAGCAGGACAGGGAAAATATTCGAGCCATTTTTCCAACCGGGGAC
AGCAAGGTTGTATTACCCGTCAACTTGGGCCGATTGATCTGGAACGCACAAAAGATCTTC
CACATCGACCTGAGAGGTCCCGCCAACCTCAACCCGCTCCGAGTGATCGAGGGAGTCCGG
GATCTCAGCAAGAAACTCGTCATCGTGTGCGGGGAGGATCGACTGAGCAAGGAGGCGCAG
AGCAACGCCACTCTGCTCTTCAACGTTCATCTGAGATCCACGTTGTGCTCTCGGAGAGTT
GCAGATGAGTTCCGACTCTCGGCTGAAGCGTTTGAATGGATTCTGGGGGAAGTTGAAACT
AAGTTCCAACAAGCTCAGGTTCACCCTGGTGAGATGGTGGGTGCACTCGCTGCCCAGTCC
CTGGGAGAACCCGCCACCCAGATGACCCTGAACACTTTCCACTACGCCGGTGTGTCGGCG
AAGAACGTAACCCTCGGAGTACCCCGGTTGAAGGAGTTGATCAACGTATCGAAGAAACCC
CGAACCCCCTCACTCACCATATACCTCGTGGGGCCGGCTACCAGGGATGCACAGCGTTGC
AAGGTCCGGGATTTAAATCACGCCACCCTCCGCAAGGTGACGGCGAACACGGCGATCTAC
TACGATCCGGACCCCATGAGCACAGTCATCCAGGAGGACCAGGAATTCGTCAATGTCTAT
TACGAGATGCCGGACTTTGATGTTACAAGGATTTCATCGTGGCTGCTCCGTATTGAACTC
GACCGGAAGAGAATGACAGAAGCTGGTATTACGAATTCGTATTATGAACAGGTCAGTATC
GCTGCAATTAGTTTCTTATCTTTAATTGTACCAAGCAATTTATTCCCGAATTTAACACAC
GGCCTGCTGACGCATATAAATAGTACTAGCATTGCCTCACTGACCATCTCATCTTGCAGT
GAGGAGCAGAAGACTGATGACGGATCGGATGAGCAAGCTGATAAGATGGAGGATGACGTC
TTCCTCCGATACATTGAAGCTAATATGCTTACCGACATGACTCTACAGGGAATTCCACAA
ATTGCAAAGCGAATCGTTATTACAAAGGAGGGGGAGTTTAACGCCGTTCAAGATTGGATT
TTGGAAACCGACGGCACAGCTCTGATGAGGATTTTATCGGAGCGCGATATCGACCCGGTC
CGAACCACCTCCAACGACATCTGCGAGATTTTCGCTGTCCTCGGTATTGAAGCTGTGCGG
AAAGCTCTGGAACGGGAAATTAACCACGTCATTTCCTTTGACGGTTCCTACGTCAACTAC
CGTCATCTTGCGCTGCTGTGTGAGGTCATGACTTCAAAGGGACATTTGATGGCGATCACG
AGACACGGGATAAATCGGCAAGAGACAGGCGCACTCATGAGATGCTCCTTTGAAGAGACA
GTCGATATTTTAATGGAGGCTGCATCATCGGCAGAAACTGACCACATGGATGGCGTGTCG
GAAAACATAATGTTGGGCCAGTTGGTACCGGGTGGAACCGGTTGCTTCGGCTTACTGCTC
GATGCAGAGAACTACTCCCCAACCTCACCCTCATATAGCCCCACTTCTCCAAGCTACAGC
CCCACATCCCCAAGTTATTCACCCACCAGCCCATCTTACTCTCCAACAAGCCCCAGTTAC
TCTCCAACCTCCCCCAGCTATTCACCCACATCACCCAGTTACAGCCCCACATCACCCTCA
TATAACCCAACCAGTCCATCGTACTCCCCAACAAGCCCCTCTTATTCACCTGCAAGCCCC
AGTTACTCCCCTACCTCCCCAAGTTACAGTCCAGCGTCACCCAGCTACTCACCCTCAAGC
CCCAAATACTCCCCAGCCAGCCCATCTTACAGTCCAGCATCCCCCGAATACAGCCCATCA
AGCCCCAAGTACGCCCCGTCATCTCCATCCTACTCGCCAGCTTCACCCTCCTACAGCCCA
TCTTCACCCAGTTATTCCCCATCCAGCCCGAAATATTCTCCGTCAAGCCCCTCATATTCT
CCAGCAAGCCCTTCATAC

InterProScan

Pfam	RNA_pol_Rpb1_1 (IPR007080) - T[9-344] 2.6E-93
SMART	RNA_pol_N (IPR006592) - T[233-535] 2.7E-187
Pfam	RNA_pol_asu (IPR000722) - T[346-507] 2.9E-72
Pfam	RNA_pol_Rpb1_3 (IPR007066) - T[511-678] 1.6E-50
Gene3D	Rpb1_funnel_sf (IPR038120) - T[673-822] 4.9E-49
Pfam	RNA_pol_Rpb1_4 (IPR007083) - T[713-813] 8.8E-36
Pfam	RNA_pol_Rpb1_5 (IPR007081) - T[820-1431] 1.1E-97
Pfam	RNA_pol_Rpb1_6 (IPR007075) - T[886-1085] 2.4E-62
Gene3D	RNA_pol_Rpb1_7_sf (IPR038593) - T[1168-1317] 2.5E-31
Pfam	RNA_pol_Rpb1_7 (IPR007073) - T[1168-1316] 9.4E-36
Pfam	RNA_pol_II_repeat_euk (IPR000684) - T[1486-1499] 1.4 - T[1500-1513] 1.4 - T[1514-1527] 1.4 - T[1528-1541] 1.4 - T[1542-1555] 0.64 - T[1556-1569] 3.0 - T[1570-1583] 0.35 - T[1584-1597] 0.88 - T[1591-1604] 0.15 - T[1612-1625] 10.0 - T[1619-1632] 13.0
ProSitePatterns	RNA_pol_II_repeat_euk (IPR000684) - T[1492-1498] . - T[1499-1505] . - T[1506-1512] . - T[1513-1519] . - T[1527-1533] . - T[1534-1540] . - T[1548-1554] . - T[1618-1624] . - T[1625-1631] . - T[1632-1638] .