Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 1,609

>Cisavi.CG.ENS81.R67.1507499-1523609.14375.p
LTESSVDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVTEGGRPKMLGLMDPRQGVVDR
MSRCQTCASNMTDCPGHFGHIELARPVFHVGFLTKTIKILRCVCYYCSRLLVEKGQPRKR
LAHVYELCKGKNICEGGEEMDNTFDVQQLGHGGCGRYQPKIRRNGMELVAEWKHVNEDSQ
EKKIVVSAERVHEIFKRISDEESDILGMDPRFARPEWMINTVIPVPPLCVRPSVTMGGTS
ARSQDDLTHKLADIIKANQQLKRNEQNGTASHIILEDVKLLQYHVATLCDNDMPGVPKAL
QKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNLKIDEVGVPRSIACNLT
YPEIVTPFNIDRMQELVRRGNNQYPGAKYIIRDGGDRIDLRYHPKPSDLHLQVGYKVERH
IKDGDVIVFNRQPTLHKMSMMGHKVRVLPWSTFRMNLSVTTPYNADFDGDEMNMHVPQTM
ETRAEILQLAMVNRMIITPQSNRPVMGIVQDTLTAVRKMTKRDSFIEKADFMNLLMYLGD
WDGYLPQPAILKPKPLWTGKQIFSLIIPPGINCIRNHSTHPDGEDTGPYKHISPGDTRVL
VENGILLSGIICKKSLGTSAGSLCHVVALEKSADVCREFYSNIQTVVNNWLMIEGHSIGI
GDTIADAQTYQDIQNQIRKAKQEVIEVSRFGLDFRMSKIYNPTPGNTLRQTFENQVNRIL
NDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHR
TLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTAETGYIQRRLV
KAMEAVMVRYDGTIRQCNDYMIQLCYGEDGLAGEKVEFQNLATLKPSHKTFDKKFRFDYT
KERYMRRCLNEDIVRMIQTDVSIQQELDGEFDQLQQDRENIRAIFPTGDSKVYITFFLSA
IKQQLFVVLPVNLGRLIWNAQKIFHIDLRGPANLNPLRVIEGVRDLSKKLVIVSTLCSRR
VADEFRLSAEAFEWILGEVETKFQQAQVHPGEMVGALAAQSLGEPATQMTLNTFHYAGVS
AKNVTLGVPRLKELINVSKKPRTPSLTIYLVGPATRDAQHFQPLPTHRMVLCRLEHATLR
KVTANTAIYYDPDPMSTVIQEDQEFVNVYYEMPDFDVTRISSWLLRIELDRKRMTDKKLS
MEQIAEKISAGFGDDLNCIFNDDNAEKLVLRIRIMNRSVSLQLVSYVLFVLFVYMHLPKE
ENKKRIVITKEGEFNAVQDWILETDGTALMRILSERDIDPVRTTSNDICEIFAVLGIEAV
RKALEREINHVISFDGSYVNYRHLALLCEVMTSKGHLMAITRHGINRQETGALMRCSFEE
TVDILMEAASSAETDHMDGVSENIMLGQLVPGGTGCFGLLLDAEKCTYAMEIPTNIGGVG
AYEPGTPGTPQSPSYTPTSPTYSPTSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYNPTSPSYSPTSPSYSPASPSYSPTSPSY

Nucleotide sequence

Length: 4,827

>Cisavi.CG.ENS81.R67.1507499-1523609.14375.t
CTCACAGAATCTAGTGTGGATCTAAAACTTGTTAAACGAGTTCAGTTTGGAATCCTCAGC
CCAGATGAAATTAAACGAATGTCGGTGACGGAGGGTGGGGTTCAGTACCCTGAGGTGACG
GAAGGGGGAAGACCCAAGATGTTGGGTCTGATGGATCCCCGTCAAGGCGTGGTTGATAGA
ATGTCCAGGTGTCAGACTTGCGCCAGCAACATGACCGACTGTCCCGGACACTTCGGACAT
ATTGAACTTGCACGACCCGTGTTTCATGTTGGATTTCTTACAAAAACCATCAAAATACTT
CGTTGTGTGTGCTACTACTGCTCGAGGCTACTTGTGGAAAAGGGTCAGCCGAGGAAGAGA
CTCGCGCATGTGTACGAGTTGTGCAAAGGGAAGAACATCTGCGAAGGAGGGGAGGAGATG
GACAACACCTTCGATGTTCAACAGCTGGGGCATGGTGGCTGTGGTCGTTACCAACCAAAG
ATCCGACGAAACGGGATGGAACTGGTTGCCGAGTGGAAACACGTCAACGAGGATTCGCAG
GAGAAGAAGATCGTTGTCTCAGCTGAGCGTGTTCATGAGATATTTAAGAGAATCTCCGAC
GAGGAATCTGACATCCTCGGCATGGACCCAAGGTTTGCTCGTCCCGAATGGATGATTAAC
ACCGTGATACCTGTTCCCCCACTGTGTGTACGTCCATCCGTCACTATGGGAGGCACCAGT
GCGAGAAGTCAGGATGATTTAACGCACAAGTTGGCTGACATTATTAAAGCCAACCAACAG
TTAAAACGAAATGAACAAAACGGAACTGCCTCCCATATTATATTAGAAGATGTGAAGTTA
CTACAGTACCATGTTGCTACACTGTGTGATAACGATATGCCTGGAGTTCCCAAGGCGTTG
CAAAAATCCGGTCGCCCTTTGAAATCGATCAAACAGCGTCTGAAAGCAAAGGAGGGTAGG
ATAAGAGGGAACTTGATGGGTAAGCGGGTGGACTTCTCCGCTCGTACCGTCATTACCCCT
GACCCCAATCTTAAAATTGATGAGGTTGGTGTGCCACGCTCCATCGCATGCAACCTGACG
TACCCCGAGATCGTCACCCCATTCAACATCGATCGGATGCAGGAACTTGTTCGACGGGGG
AACAACCAGTACCCCGGGGCGAAATACATCATCCGAGACGGTGGGGATCGTATCGACCTC
CGGTATCACCCCAAACCCTCCGATCTGCATCTGCAAGTGGGCTACAAGGTTGAGCGGCAC
ATAAAAGATGGCGACGTGATTGTGTTCAACCGACAGCCCACTCTGCACAAGATGTCCATG
ATGGGACATAAAGTCAGAGTTCTGCCCTGGTCTACTTTTAGAATGAATTTATCGGTAACG
ACGCCGTACAACGCTGATTTCGATGGAGACGAGATGAACATGCACGTCCCGCAAACCATG
GAAACGAGAGCCGAGATCCTCCAACTCGCCATGGTGAACCGGATGATCATCACTCCACAG
AGCAATCGGCCGGTCATGGGAATTGTGCAGGACACACTGACCGCCGTCCGCAAAATGACC
AAGCGGGATTCCTTCATTGAAAAGGCCGACTTCATGAACCTGTTAATGTACCTGGGTGAT
TGGGACGGGTACCTCCCCCAACCTGCGATCCTCAAACCCAAGCCTCTCTGGACGGGGAAG
CAGATCTTCTCGCTCATCATCCCCCCTGGGATAAACTGCATCCGGAACCACAGCACCCAT
CCTGATGGGGAGGACACTGGACCTTATAAGCACATCTCACCCGGGGATACAAGGGTGCTG
GTGGAGAACGGTATCTTGCTGAGCGGAATAATATGTAAGAAGTCGCTGGGTACGTCTGCG
GGGTCTCTATGTCACGTGGTTGCACTGGAGAAATCTGCCGATGTGTGCCGAGAGTTCTAT
AGCAATATACAGACTGTGGTGAACAACTGGTTGATGATTGAGGGACATTCCATCGGTATC
GGAGATACCATTGCCGATGCACAAACCTACCAAGATATTCAAAACCAGATCAGGAAAGCA
AAGCAGGAAGTCATAGAGGTGAGCAGATTTGGATTGGATTTCCGCATGTCTAAGATTTAC
AACCCCACTCCTGGTAATACTCTGCGGCAGACATTTGAAAATCAAGTCAACAGGATTCTG
AACGATGCCCGTGACAAAACTGGTTCATCTGCTCAGAAGAGTTTATCAGACTTCAACAAC
TTTAAAGCTATGGTGGTGGCTGGCTCTAAAGGGTCCAAAATCAACATCTCCCAGGTTATT
GCTGTTGTGGGTCAACAGAACGTGGAAGGAAAGCGGATCCCATTTGGGTTTCGTCACCGA
ACCCTGCCCCATTTTATTAAGGATGATTATGGTCCAGAGGCTCGTGGGTTTGTGGAGAAC
TCGTACCTTGCTGGGTTGACCCCAACCGAGTTTTACTTCCATGCCATGGGAGGTAGAGAG
GGTCTCATCGATACTGCTGTCAAAACTGCCGAAACTGGTTACATCCAGCGTCGACTGGTG
AAAGCCATGGAAGCGGTTATGGTGCGATACGACGGCACGATACGACAATGTAACGATTAC
ATGATCCAGCTCTGCTACGGGGAAGATGGCTTGGCTGGGGAAAAGGTGGAGTTCCAGAAC
CTCGCCACGCTTAAACCAAGCCACAAAACCTTCGACAAGAAATTCCGATTCGACTACACC
AAGGAGCGATACATGCGTCGATGTTTGAACGAGGATATCGTCCGAATGATCCAGACCGAC
GTCTCCATCCAACAGGAGCTCGATGGCGAGTTCGACCAGTTACAGCAGGACAGGGAAAAT
ATTCGAGCCATTTTTCCAACCGGGGACAGCAAGGTATATATAACATTTTTTTTGAGTGCT
ATAAAACAGCAGCTTTTTGTTGTATTACCCGTCAACTTGGGCCGATTGATCTGGAACGCA
CAAAAGATCTTCCACATCGACCTGAGAGGTCCCGCCAACCTCAACCCGCTCCGAGTGATC
GAGGGAGTCCGGGATCTCAGCAAGAAACTCGTCATCGTATCCACGTTGTGCTCTCGGAGA
GTTGCAGATGAGTTCCGACTCTCGGCTGAAGCGTTTGAATGGATTCTGGGGGAAGTTGAA
ACTAAGTTCCAACAAGCTCAGGTTCACCCTGGTGAGATGGTGGGTGCACTCGCTGCCCAG
TCCCTGGGAGAACCCGCCACCCAGATGACCCTGAACACTTTCCACTACGCCGGTGTGTCG
GCGAAGAACGTAACCCTCGGAGTACCCCGGTTGAAGGAGTTGATCAACGTATCGAAGAAA
CCCCGAACCCCCTCACTCACCATATACCTCGTGGGGCCGGCTACCAGGGATGCACAGCAC
TTCCAACCATTACCCACTCACAGGATGGTGTTGTGTCGTCTGGAGCACGCCACCCTCCGC
AAGGTGACGGCGAACACGGCGATCTACTACGATCCGGACCCCATGAGCACAGTCATCCAG
GAGGACCAGGAATTCGTCAATGTCTATTACGAGATGCCGGACTTTGATGTTACAAGGATT
TCATCGTGGCTGCTCCGTATTGAACTCGACCGGAAGAGAATGACAGACAAGAAACTGAGT
ATGGAGCAAATTGCGGAGAAGATCAGTGCTGGGTTCGGTGACGATTTGAATTGTATTTTC
AATGACGACAATGCAGAGAAGCTGGTATTACGAATTCGTATTATGAACAGGTCAGTATCG
CTGCAATTAGTTTCTTATGTATTGTTTGTATTGTTCGTATACATGCACTTGCCAAAAGAA
GAAAACAAAAAGCGAATCGTTATTACAAAGGAGGGGGAGTTTAACGCCGTTCAAGATTGG
ATTTTGGAAACCGACGGCACAGCTCTGATGAGGATTTTATCGGAGCGCGATATCGACCCG
GTCCGAACCACCTCCAACGACATCTGCGAGATTTTCGCTGTCCTCGGTATTGAAGCTGTG
CGGAAAGCTCTGGAACGGGAAATTAACCACGTCATTTCCTTTGACGGTTCCTACGTCAAC
TACCGTCATCTTGCGCTGCTGTGTGAGGTCATGACTTCAAAGGGACATTTGATGGCGATC
ACGAGACACGGGATAAATCGGCAAGAGACAGGCGCACTCATGAGATGCTCCTTTGAAGAG
ACAGTCGATATTTTAATGGAGGCTGCATCATCGGCAGAAACTGACCACATGGATGGCGTG
TCGGAAAACATAATGTTGGGCCAGTTGGTACCGGGTGGAACCGGTTGCTTCGGCTTACTG
CTCGATGCAGAGAAGTGCACCTATGCCATGGAGATACCAACCAACATTGGAGGAGTTGGG
GCTTACGAACCAGGGACTCCGGGCACCCCACAAAGCCCCAGTTACACCCCAACAAGTCCA
ACATATTCACCCACCTCACCTCGGTATTCCCCAACCAGCCCCAGCTACAGCCCCACATCA
CCCAGCTATTCACCCACGTCACCCTCCTACAGCCCCACGTCTCCATCTTATTCACCCACA
AGTCCATCCTATTCACCCACCTCTCCAAGTTACAGTCCTACTTCACCGAGTTACAGCCCC
ACTTCACCCAGCTACTCCCCAACCTCACCCTCATATAGCCCCACTTCTCCAAGCTACAGC
CCCACATCCCCAAGTTATTCACCCACCAGCCCATCTTACTCTCCAACAAGCCCCAGTTAC
TCTCCAACCTCCCCCAGCTATTCACCCACATCACCCAGTTACAGCCCCACATCACCCTCA
TATAACCCAACCAGTCCATCGTACTCCCCAACAAGCCCCTCTTATTCACCTGCAAGCCCC
AGTTACTCCCCTACCTCCCCAAGTTAC

InterProScan

Pfam	RNA_pol_Rpb1_1 (IPR007080) - T[9-325] 2.6E-103
SMART	RNA_pol_N (IPR006592) - T[216-520] 3.3E-198
Pfam	RNA_pol_asu (IPR000722) - T[327-492] 3.5E-75
Pfam	RNA_pol_Rpb1_3 (IPR007066) - T[496-663] 1.6E-50
Gene3D	Rpb1_funnel_sf (IPR038120) - T[658-807] 4.8E-49
Pfam	RNA_pol_Rpb1_4 (IPR007083) - T[698-798] 8.5E-36
Pfam	RNA_pol_Rpb1_5 (IPR007081) - T[805-1372] 5.2E-97
Pfam	RNA_pol_Rpb1_6 (IPR007075) - T[871-1014] 8.7E-34 - T[1014-1046] 1.3E-8
Gene3D	RNA_pol_Rpb1_7_sf (IPR038593) - T[1137-1243] 7.4E-46
Pfam	RNA_pol_Rpb1_7 (IPR007073) - T[1137-1237] 2.5E-46
Pfam	RNA_pol_II_repeat_euk (IPR000684) - T[1450-1462] 6.1 - T[1463-1476] 0.019 - T[1477-1490] 0.37 - T[1484-1497] 0.52 - T[1491-1504] 0.47 - T[1498-1511] 0.55 - T[1505-1518] 0.46 - T[1512-1525] 0.54 - T[1519-1532] 0.47 - T[1526-1539] 0.56 - T[1533-1546] 0.47 - T[1540-1553] 0.55 - T[1547-1560] 0.47 - T[1554-1567] 0.52 - T[1568-1581] 0.42 - T[1582-1595] 0.63 - T[1596-1609] 2.9
ProSitePatterns	RNA_pol_II_repeat_euk (IPR000684) - T[1455-1461] . - T[1469-1475] . - T[1476-1482] . - T[1490-1496] . - T[1497-1503] . - T[1504-1510] . - T[1511-1517] . - T[1525-1531] . - T[1532-1538] . - T[1539-1545] . - T[1546-1552] . - T[1574-1580] . - T[1588-1594] . - T[1602-1608] .