- Transcript 'Phfumi.CG.MTP2014.S9...' >
- Transcript 'Moocul.CG.ELv1_2.S68...' >
- Clone 'cima857843' >
- Transcript 'Boleac.CG.SB_v3.S297...' >
- Transcript 'Cisavi.CG.ENS81.R76....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R76.1995169-2024065.13969.t
Possible name(s)
CSDE1
Gene model
Location
R76 [1,995,168 / 2,022,648]
Amino acid sequence
Length: 797
>Cisavi.CG.ENS81.R76.1995169-2024065.13969.p
TTSPHPVTPVPSPGLPNSNGYRSRETGVIEKLLVSYGFIKCADREGRLFFHYSQFHGEAH
TLHINDEIEFEVSMDTRTGKPVAVQVVKLQKGTVVFEVLSEDRILGEVTNPAPPLSLIPG
QNTMNAVPGGTTRKLGSLSYERMGEFFFLHYSACDLTNPNLALLPGDKVSFNIATEKRTG
VMRARKITLVERAPPKRFNGIVTAMKESFGFIERSDIVKEIFFHYSEVLANVPDLHVGDH
VEFSVQERNNKDVATEIRLLPLGSVQLEEISNELYVGTIEKPLPAKAPNKVMNEVRFKAS
KIFLIQRKRIRFGEKDRAANCLHTLCKGDQVSFLTITDKRNGQQRAAGVTLLLEKTIIVS
KEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCEMLDPAHHVRMSDEVQFTVLLDPVAEK
QRMHATRIKVLPKGSVIFHTVTDQAYTGIVETLPGASPNTDWMDALSLKVGDTVSWCYTG
CGVWVLFPLSLPEADPSTNASTPKQETPETDENDSNTEKLSDVSLSPRLENTEGSRGCFG
WISTLKDTFGFIESLDHGSEIFFHYSEMQAPIEKYKGWLPCHLSHWNQSCFKSVDKIFHT
SWIEPSSNYVHHITGKVLKPLKSVNPTQTSYQGLIEYKETDESGTTSPLSLSDRRDFIQV
GDKVTFQVGIISSDVNTNCQRAANVNVNRETVRATVDSIKGEFGFINYEVKGGDTTGGSG
KLFFHMSEVRDATQSIVAGALVEFSVIYNQRSGKFSASKVRVAEAQPKQQRPERLRLRSS
CESSGPTVSVLRQPRGP
Nucleotide sequence
Length: 2,941
>Cisavi.CG.ENS81.R76.1995169-2024065.13969.t
AATGTTTAGTAGTTTTATTTCGGTAAAAATACCGTGCCTAATTTAAGCAAAGTCAGACGT
CTAAAAAACAGGAAACGGATTCTGCAAAAATAAGTTCCACAGCAATTTAATTTATTATCA
AGACCAGAGCAAGCAAGCAACCATACAAAAGTATTGCAACTTTAAAGGCATAACACTGCT
AAATTATTTTACCTATACTGTGAACAGATAAAGCAATATGTGGCCTGCGACAAATGGTAC
ACCAAGTACGTTTTCCAACTCCTTGAGTAGTCTTCTGGGTGCACAGCCATTTAGACCCCA
GACCCCTGTTCTGTCAAATCAGCAAAAAGTGCTTGTAAACGGTGGAATATCAGCATTGCA
GCAGCATCAGCAGGAAGCAAAGGATCGTCAGATGATAAACCGTCGTTCACTTAATCGCAC
AACCAGCTGTGGGCTGTTCCAGCAGAATGGCATCGCACGACCTTCCGCACTTAACCAGCA
TCGAGCATTACAAAGGTCGACGAGCTTCGATTCAAACCGAATGTTAAACGTGTCAAACCA
GAGCTCTGGTACCACTTCACCTCACCCCGTTACCCCAGTCCCTTCACCCGGATTACCCAA
CAGTAACGGTTATCGCAGCCGCGAAACGGGCGTCATTGAAAAACTTCTCGTTTCCTATGG
ATTTATTAAGTGCGCGGACCGAGAGGGTCGTCTTTTCTTCCACTACAGTCAGTTCCACGG
AGAAGCGCATACGCTGCATATTAATGATGAAATTGAATTCGAAGTCTCAATGGACACACG
CACTGGCAAACCGGTGGCTGTGCAAGTCGTCAAGCTCCAGAAGGGAACCGTCGTATTCGA
AGTCCTTAGCGAGGACCGTATTCTCGGAGAAGTTACAAACCCAGCGCCCCCACTCTCCCT
TATCCCGGGACAGAACACGATGAACGCAGTCCCAGGGGGAACCACCAGAAAACTCGGCAG
TCTTTCATACGAGCGCATGGGTGAATTTTTCTTTCTCCACTACTCTGCCTGTGACCTTAC
CAATCCAAACTTAGCACTACTTCCCGGTGATAAAGTATCGTTCAACATTGCCACAGAAAA
AAGAACTGGCGTAATGAGAGCACGTAAGATAACGCTGGTGGAACGGGCACCTCCAAAAAG
GTTCAACGGCATCGTTACCGCAATGAAGGAATCCTTTGGGTTTATTGAGCGCTCTGATAT
AGTTAAAGAGATATTTTTCCACTACAGCGAAGTGCTGGCTAATGTGCCAGACTTGCATGT
CGGCGATCATGTCGAGTTTAGTGTTCAAGAACGAAATAATAAGGACGTAGCTACTGAAAT
CCGATTACTGCCTCTGGGTTCTGTGCAATTAGAAGAAATATCAAATGAACTGTACGTTGG
CACCATAGAAAAGCCTTTGCCTGCCAAAGCTCCGAATAAAGTGATGAATGAAGTAAGGTT
CAAGGCATCAAAGATTTTTTTAATTCAAAGAAAAAGAATACGATTCGGGGAAAAGGACAG
AGCGGCGAACTGCTTACACACACTCTGCAAGGGAGATCAGGTATCGTTCCTTACAATCAC
CGACAAGCGTAACGGGCAGCAACGCGCGGCGGGAGTTACGCTTCTACTCGAAAAGACAAT
CATTGTGAGCAAGGAAAAGAGGGAACAGGGCATAGTGGCAGCTGTAAAGGAAGGATTCGG
GTTCATAAAATGTGTGGAGCGCGATTCCCGACTCTTCTTCCACTGCTGCGAGATGCTCGA
TCCGGCTCACCATGTTAGGATGTCTGACGAAGTCCAGTTCACTGTGCTGCTCGACCCTGT
GGCTGAAAAACAACGGATGCATGCTACAAGGATAAAAGTTCTCCCAAAGGGATCTGTCAT
CTTCCACACGGTGACCGACCAAGCTTACACTGGGATAGTTGAGACTCTACCAGGGGCTTC
CCCTAATACAGACTGGATGGACGCTCTGAGTCTTAAAGTTGGCGACACTGTAAGTTGGTG
TTATACTGGATGTGGGGTGTGGGTTCTGTTCCCACTCTCGCTACCTGAAGCTGATCCATC
CACAAACGCATCAACACCGAAGCAAGAAACTCCAGAAACTGACGAAAACGACTCTAACAC
TGAAAAGTTATCAGATGTATCACTTTCACCCAGGCTTGAAAACACGGAAGGGTCGCGGGG
ATGTTTCGGATGGATCAGCACATTGAAAGATACTTTCGGGTTCATCGAGTCACTTGACCA
CGGGAGTGAGATATTCTTCCACTACAGCGAGATGCAAGCTCCGATCGAAAAGTACAAAGG
CTGGCTGCCCTGTCACTTATCTCACTGGAATCAAAGCTGTTTTAAATCAGTTGACAAAAT
ATTTCATACTAGTTGGATTGAACCAAGTTCCAACTATGTCCACCATATTACAGGCAAAGT
GCTGAAACCACTAAAATCGGTCAACCCAACACAAACCAGCTACCAAGGATTGATTGAATA
CAAGGAGACTGATGAGAGTGGTACGACGTCCCCTCTAAGCCTCAGCGATCGCAGGGATTT
CATCCAAGTTGGAGACAAGGTTACCTTCCAGGTGGGTATTATCAGCTCAGATGTGAACAC
AAACTGCCAACGTGCTGCTAACGTCAACGTCAACAGAGAAACCGTCCGCGCCACTGTGGA
CAGCATTAAAGGAGAGTTCGGTTTCATAAACTACGAGGTGAAGGGGGGCGACACCACTGG
AGGCAGTGGCAAGCTGTTCTTTCACATGTCCGAGGTGCGGGACGCCACGCAGTCGATCGT
GGCTGGCGCTTTGGTCGAGTTCTCAGTGATTTATAACCAGAGAAGTGGCAAATTCTCAGC
GTCGAAAGTGCGCGTGGCAGAAGCGCAACCGAAGCAGCAACGCCCAGAGCGATTGAGGCT
GCGCAGCTCGTGCGAGTCCAGCGGCCCGACCGTGTCCGTGCTCCGTCAGCCCAGGGGACC
A
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[20-94] 1.87E-16 - T[196-261] 2.18E-14 - T[356-435] 5.52E-13 - T[537-572] 2.4E-6 - T[688-763] 3.0E-10 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[26-88] 5.1E-12 - T[199-258] 2.2E-14 - T[366-426] 2.7E-6 - T[540-570] 6.0E-5 - T[694-761] 8.7E-6 |
| SMART |
CSD (IPR011129) - T[26-89] 3.2E-11 - T[199-260] 4.1E-13 - T[366-431] 9.5E-4 - T[693-763] 0.01 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[36-55] . - T[209-228] . - T[549-568] . |
| CDD |
CSP_DNA-bd (IPR002059) - T[36-88] 2.79258E-9 - T[196-259] 2.98326E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 41.771 % | 525 | 6.06E-176 |