- Clone 'ciem811k11' >
- Clone 'cicl057l21' >
- Clone 'cidg843f12' >
- Clone 'AHC0AAA50YP06' >
- Transcript 'Cisavi.CG.ENS81.R76....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R76.1995169-2024065.13970.t
Possible name(s)
CSDE1
Gene model
Location
R76 [1,997,909 / 2,022,648]
Amino acid sequence
Length: 804
>Cisavi.CG.ENS81.R76.1995169-2024065.13970.p
TTSPHPVTPVPSPGLPNSNGYRSRETGVIEKLLVSYGFIKCADREGRLFFHYSQFHGEAH
TLHINDEIEFEVSMDTRTGKPVAVQVVKLQKGTVVFEVLSEDRILGEVTNPAPPLSLIPG
QNTMNAVPGGTTRKLGSLSYERMGEFFFLHYSACDLTNPNLALLPGDKVSFNIATEKRTG
VMRARKITLVERAPPKRFNGIVTAMKESFGFIERSDIVKEIFFHYSEVLANVPDLHVGDH
VEFSVQERNNKDVATEIRLLPLGSVQLEEISNELYVGTIEKPLPAKAPNKVMNEVRFKAS
KIFLIQRKRIRFGEKDRAANCLHTLCKGDQVSFLTITDKRNGQQRAAGVTLLLEKTIIVS
KEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCEMLDPAHHVRMSDEVQFTVLLDPVAEK
QRMHATRIKVLPKGSVIFHTVTDQAYTGIVETLPGASPNTVPKRNLEKFYTVGANPADPT
ADTVARVPYASKDFKDWMDALSLKVGDTVEFKICEVKRTGAKSAVDIILLTRHADFDPSR
SRGCFGWISTLKDTFGFIESLDHGSEIFFHYSEMQAPIEKYKGWLPCHLSHWNQSCFKSV
DKIFHTSWIEPSSNYVHHITGKVLKPLKSVNPTQTSYQGLIEYKETDESDTTIKTILYSP
LSLSDRRDFIQVGDKVTFQVDVNTNCQRAANVNVNRETVRATVDSIKGEFGFINYEVKGG
DTTGGSGKLFFHMSEVRDATQSIVAGALVEFSVIYNQRSGKFSASKVRVAEAQPKQQRPE
RLRLRSSCESSGPTVSVLRQPRGP
Nucleotide sequence
Length: 2,645
>Cisavi.CG.ENS81.R76.1995169-2024065.13970.t
ATCAGCAAAAAGTGCTTGTAAACGGTGGAATATCAGCATTGCAGCAGCATCAGCAGGAAG
CAAAGGATCGTCAGATGATAAACCGTCGTTCACTTAATCGCACAACCAGCTGTGGGCTGT
TCCAGCAGAATGGCATCGCACGACCTTCCGCACTTAACCAGCATCGAGCATTACAAAGGT
CGACGAGCTTCGATTCAAACCGAATGTTAAACGTGTCAAACCAGAGCTCTGGTACCACTT
CACCTCACCCCGTTACCCCAGTCCCTTCACCCGGATTACCCAACAGTAACGGTTATCGCA
GCCGCGAAACGGGCGTCATTGAAAAACTTCTCGTTTCCTATGGATTTATTAAGTGCGCGG
ACCGAGAGGGTCGTCTTTTCTTCCACTACAGTCAGTTCCACGGAGAAGCGCATACGCTGC
ATATTAATGATGAAATTGAATTCGAAGTCTCAATGGACACACGCACTGGCAAACCGGTGG
CTGTGCAAGTCGTCAAGCTCCAGAAGGGAACCGTCGTATTCGAAGTCCTTAGCGAGGACC
GTATTCTCGGAGAAGTTACAAACCCAGCGCCCCCACTCTCCCTTATCCCGGGACAGAACA
CGATGAACGCAGTCCCAGGGGGAACCACCAGAAAACTCGGCAGTCTTTCATACGAGCGCA
TGGGTGAATTTTTCTTTCTCCACTACTCTGCCTGTGACCTTACCAATCCAAACTTAGCAC
TACTTCCCGGTGATAAAGTATCGTTCAACATTGCCACAGAAAAAAGAACTGGCGTAATGA
GAGCACGTAAGATAACGCTGGTGGAACGGGCACCTCCAAAAAGGTTCAACGGCATCGTTA
CCGCAATGAAGGAATCCTTTGGGTTTATTGAGCGCTCTGATATAGTTAAAGAGATATTTT
TCCACTACAGCGAAGTGCTGGCTAATGTGCCAGACTTGCATGTCGGCGATCATGTCGAGT
TTAGTGTTCAAGAACGAAATAATAAGGACGTAGCTACTGAAATCCGATTACTGCCTCTGG
GTTCTGTGCAATTAGAAGAAATATCAAATGAACTGTACGTTGGCACCATAGAAAAGCCTT
TGCCTGCCAAAGCTCCGAATAAAGTGATGAATGAAGTAAGGTTCAAGGCATCAAAGATTT
TTTTAATTCAAAGAAAAAGAATACGATTCGGGGAAAAGGACAGAGCGGCGAACTGCTTAC
ACACACTCTGCAAGGGAGATCAGGTATCGTTCCTTACAATCACCGACAAGCGTAACGGGC
AGCAACGCGCGGCGGGAGTTACGCTTCTACTCGAAAAGACAATCATTGTGAGCAAGGAAA
AGAGGGAACAGGGCATAGTGGCAGCTGTAAAGGAAGGATTCGGGTTCATAAAATGTGTGG
AGCGCGATTCCCGACTCTTCTTCCACTGCTGCGAGATGCTCGATCCGGCTCACCATGTTA
GGATGTCTGACGAAGTCCAGTTCACTGTGCTGCTCGACCCTGTGGCTGAAAAACAACGGA
TGCATGCTACAAGGATAAAAGTTCTCCCAAAGGGATCTGTCATCTTCCACACGGTGACCG
ACCAAGCTTACACTGGGATAGTTGAGACTCTACCAGGGGCTTCCCCTAATACAGTACCGA
AAAGAAACCTTGAAAAATTCTACACTGTCGGGGCTAACCCAGCTGACCCGACTGCGGACA
CAGTGGCACGAGTCCCGTATGCCTCCAAGGATTTCAAGGACTGGATGGACGCTCTGAGTC
TTAAAGTTGGCGACACTGTTGAGTTCAAAATATGTGAGGTGAAGCGCACTGGGGCAAAAA
GCGCCGTCGACATCATACTGCTGACTCGCCACGCCGATTTCGATCCCAGCAGGTCGCGGG
GATGTTTCGGATGGATCAGCACATTGAAAGATACTTTCGGGTTCATCGAGTCACTTGACC
ACGGGAGTGAGATATTCTTCCACTACAGCGAGATGCAAGCTCCGATCGAAAAGTACAAAG
GCTGGCTGCCCTGTCACTTATCTCACTGGAATCAAAGCTGTTTTAAATCAGTTGACAAAA
TATTTCATACTAGTTGGATTGAACCAAGTTCCAACTATGTCCACCATATTACAGGCAAAG
TGCTGAAACCACTAAAATCGGTCAACCCAACACAAACCAGCTACCAAGGATTGATTGAAT
ACAAGGAGACTGATGAGAGTGATACGACCATCAAAACGATCCTGTATAGCCCTCTAAGCC
TCAGCGATCGCAGGGATTTCATCCAAGTTGGAGACAAGGTTACCTTCCAGGTGGATGTGA
ACACAAACTGCCAACGTGCTGCTAACGTCAACGTCAACAGAGAAACCGTCCGCGCCACTG
TGGACAGCATTAAAGGAGAGTTCGGTTTCATAAACTACGAGGTGAAGGGGGGCGACACCA
CTGGAGGCAGTGGCAAGCTGTTCTTTCACATGTCCGAGGTGCGGGACGCCACGCAGTCGA
TCGTGGCTGGCGCTTTGGTCGAGTTCTCAGTGATTTATAACCAGAGAAGTGGCAAATTCT
CAGCGTCGAAAGTGCGCGTGGCAGAAGCGCAACCGAAGCAGCAACGCCCAGAGCGATTGA
GGCTGCGCAGCTCGTGCGAGTCCAGCGGCCCGACCGTGTCCGTGCTCCGTCAGCCCAGGG
GACCA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[20-94] 2.57E-16 - T[196-261] 1.33E-14 - T[356-435] 3.96E-13 - T[544-578] 2.96E-6 - T[699-770] 4.21E-10 |
| SMART |
CSD (IPR011129) - T[26-89] 3.2E-11 - T[199-260] 4.1E-13 - T[366-431] 9.5E-4 - T[700-770] 0.01 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[26-88] 5.2E-12 - T[199-258] 2.2E-14 - T[366-426] 2.8E-6 - T[546-576] 6.1E-5 - T[701-768] 8.8E-6 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[36-55] . - T[209-228] . - T[555-574] . |
| CDD |
CSP_DNA-bd (IPR002059) - T[36-88] 4.20927E-9 - T[196-259] 4.71945E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 42.503 % | 536 | 4.21E-180 |