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- Transcript 'Cisavi.CG.ENS81.R76....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R76.1995169-2024065.13971.t
Possible name(s)
CSDE1
Gene model
Location
R76 [1,999,421 / 2,024,065]
Amino acid sequence
Length: 760
>Cisavi.CG.ENS81.R76.1995169-2024065.13971.p
TTSPHPVTPVPSPGLPNSNGYRSRETGVIEKLLVSYGFIKCADREGRLFFHYSQFHGEAH
TLHINDEIEFEVSMDTRTGKPVAVQVVKLQKGTVVFEVLSEDRILGEEFFFLHYSACDLT
NPNLALLPGDKVSFNIATEKRTGVMRARKITLVERAPPKRFNGIVTAMKESFGFIERSDI
VKEIFFHYSEVLANVPDLHVGDHVEFSVQERNNKDVATEIRLLPLGSVQLEEISNELYVG
TIEKPLPAKAPNKVMNEVRFKASKIFLIQRKRIRFGEKDRAANCLHTLCKGDQVSFLTIT
DKRNGQQRAAGVTLLLEKTIIVSKEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCEMLD
PAHHVRMSDEVQFTVLLDPVAEKQRMHATRIKVLPKGSVIFHTVTDQAYTGIVETLPGAS
PNTDWMDALSLKVGDTVSWCYTGCGVWVLFPLSLPEADPSTNASTPKQETPETDENDSNT
EKLSDVSLSPRLENTEGSRGCFGWISTLKDTFGFIESLDHGSEIFFHYSEMQAPIEKYKG
WLPCHLSHWNQSCFKSVDKIFHTSWIEPSSNYVHHITGKVLKPLKSVNPTQTSYQGLIEY
KETDESGTTSPLSLSDRRDFIQVGDKVTFQVGIISSDVNTNCQRAANVNVNRETVRATVD
SIKGEFGFINYEVKGGDTTGGSGKLFFHMSEVRDATQSIVAGALVEFSVIYNQRSGKFSA
SKVRVAEAQPKQQRPERLRLRSSCESSGPTVSVLRQPRGP
Nucleotide sequence
Length: 3,176
>Cisavi.CG.ENS81.R76.1995169-2024065.13971.t
ACCACTTCACCTCACCCCGTTACCCCAGTCCCTTCACCCGGATTACCCAACAGTAACGGT
TATCGCAGCCGCGAAACGGGCGTCATTGAAAAACTTCTCGTTTCCTATGGATTTATTAAG
TGCGCGGACCGAGAGGGTCGTCTTTTCTTCCACTACAGTCAGTTCCACGGAGAAGCGCAT
ACGCTGCATATTAATGATGAAATTGAATTCGAAGTCTCAATGGACACACGCACTGGCAAA
CCGGTGGCTGTGCAAGTCGTCAAGCTCCAGAAGGGAACCGTCGTATTCGAAGTCCTTAGC
GAGGACCGTATTCTCGGAGAAGAATTTTTCTTTCTCCACTACTCTGCCTGTGACCTTACC
AATCCAAACTTAGCACTACTTCCCGGTGATAAAGTATCGTTCAACATTGCCACAGAAAAA
AGAACTGGCGTAATGAGAGCACGTAAGATAACGCTGGTGGAACGGGCACCTCCAAAAAGG
TTCAACGGCATCGTTACCGCAATGAAGGAATCCTTTGGGTTTATTGAGCGCTCTGATATA
GTTAAAGAGATATTTTTCCACTACAGCGAAGTGCTGGCTAATGTGCCAGACTTGCATGTC
GGCGATCATGTCGAGTTTAGTGTTCAAGAACGAAATAATAAGGACGTAGCTACTGAAATC
CGATTACTGCCTCTGGGTTCTGTGCAATTAGAAGAAATATCAAATGAACTGTACGTTGGC
ACCATAGAAAAGCCTTTGCCTGCCAAAGCTCCGAATAAAGTGATGAATGAAGTAAGGTTC
AAGGCATCAAAGATTTTTTTAATTCAAAGAAAAAGAATACGATTCGGGGAAAAGGACAGA
GCGGCGAACTGCTTACACACACTCTGCAAGGGAGATCAGGTATCGTTCCTTACAATCACC
GACAAGCGTAACGGGCAGCAACGCGCGGCGGGAGTTACGCTTCTACTCGAAAAGACAATC
ATTGTGAGCAAGGAAAAGAGGGAACAGGGCATAGTGGCAGCTGTAAAGGAAGGATTCGGG
TTCATAAAATGTGTGGAGCGCGATTCCCGACTCTTCTTCCACTGCTGCGAGATGCTCGAT
CCGGCTCACCATGTTAGGATGTCTGACGAAGTCCAGTTCACTGTGCTGCTCGACCCTGTG
GCTGAAAAACAACGGATGCATGCTACAAGGATAAAAGTTCTCCCAAAGGGATCTGTCATC
TTCCACACGGTGACCGACCAAGCTTACACTGGGATAGTTGAGACTCTACCAGGGGCTTCC
CCTAATACAGACTGGATGGACGCTCTGAGTCTTAAAGTTGGCGACACTGTAAGTTGGTGT
TATACTGGATGTGGGGTGTGGGTTCTGTTCCCACTCTCGCTACCTGAAGCTGATCCATCC
ACAAACGCATCAACACCGAAGCAAGAAACTCCAGAAACTGACGAAAACGACTCTAACACT
GAAAAGTTATCAGATGTATCACTTTCACCCAGGCTTGAAAACACGGAAGGGTCGCGGGGA
TGTTTCGGATGGATCAGCACATTGAAAGATACTTTCGGGTTCATCGAGTCACTTGACCAC
GGGAGTGAGATATTCTTCCACTACAGCGAGATGCAAGCTCCGATCGAAAAGTACAAAGGC
TGGCTGCCCTGTCACTTATCTCACTGGAATCAAAGCTGTTTTAAATCAGTTGACAAAATA
TTTCATACTAGTTGGATTGAACCAAGTTCCAACTATGTCCACCATATTACAGGCAAAGTG
CTGAAACCACTAAAATCGGTCAACCCAACACAAACCAGCTACCAAGGATTGATTGAATAC
AAGGAGACTGATGAGAGTGGTACGACGTCCCCTCTAAGCCTCAGCGATCGCAGGGATTTC
ATCCAAGTTGGAGACAAGGTTACCTTCCAGGTGGGTATTATCAGCTCAGATGTGAACACA
AACTGCCAACGTGCTGCTAACGTCAACGTCAACAGAGAAACCGTCCGCGCCACTGTGGAC
AGCATTAAAGGAGAGTTCGGTTTCATAAACTACGAGGTGAAGGGGGGCGACACCACTGGA
GGCAGTGGCAAGCTGTTCTTTCACATGTCCGAGGTGCGGGACGCCACGCAGTCGATCGTG
GCTGGCGCTTTGGTCGAGTTCTCAGTGATTTATAACCAGAGAAGTGGCAAATTCTCAGCG
TCGAAAGTGCGCGTGGCAGAAGCGCAACCGAAGCAGCAACGCCCAGAGCGATTGAGGCTG
CGCAGCTCGTGCGAGTCCAGCGGCCCGACCGTGTCCGTGCTCCGTCAGCCCAGGGGACCA
ACCGAGAATTCGAACGGATTCGCGCTCTCTCGTCGCAATGAGAGCGAAGACGGCTCGCAA
AGCGCCTAAGCGCGTGAGAAAAACCACGGAATTTCGACAAATTCAGTTCTAATACCTTTC
TGTTGGACGCCAATTTCAGTTTCGGGGAACCCCCCGCGCCACAACCGCAGCCATATATTT
TCCCAATGCAGTCAATGTATGCAGTGCATGGGTCGCGGACCGCCACTCGCGTTTCGTTTT
TGTTTTAATACGTACGTTCCCCCTTACTTAACCTATGTTTTCAAGTTTCGTACCCCTCCA
TGCATTCTACTCGCGAAAGTGGGTTCTTGTCGAATAACGCCGGCGTACTCGTCTGTCCTC
CGTTCGAGATCCATTCCCGTTTTAAAGCAACAAGAAAACGCCCGACTTCACCTTTTTTGC
AATGAAATTTATTCGATTTCGGGAGAGCAAAATAACGACCTCCGAAGCCCCGCCAAAAAG
TCAACTTTTTAACCCCAGTATTTTTACCGCGCGCGCGAGAAGAAATATCAACTCACCGAC
CGACATTCCCCCCACGTGTTCCATTTCCCACACGATTCACTGTGCCCGCACTCCTAACGT
AGCAGTGCTTAACTATTGCCACTTCTATACATTAGTTCTCTCTCGACCGTCCAAAATCCC
GCCTACTGCCGTGCATACGTTTGCACAGCGGGTAACCTTCTCAATAAAACCACAATATTG
CAATTTTTCCTGTCCTATGGTGCTGATTTCACGCTTGTTCGATTTCTGTTTAAAACACTG
TTTCTTTGCTACCTTAACTGTACATATTTGTTTATATACCACTACCAACAATTTGAGACA
AAACTTTTTTCAGCTTACGTCTTTGTTTTTGACCCCGTTCATATGAATGCTATGTT
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[20-94] 1.57E-16 - T[159-224] 2.0E-14 - T[319-398] 5.33E-13 - T[500-535] 2.03E-6 - T[651-726] 2.48E-10 |
| SMART |
CSD (IPR011129) - T[26-89] 3.2E-11 - T[162-223] 4.1E-13 - T[329-394] 9.5E-4 - T[656-726] 0.01 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[26-88] 4.8E-12 - T[162-221] 2.0E-14 - T[329-389] 2.6E-6 - T[503-533] 5.7E-5 - T[657-724] 8.2E-6 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[36-55] . - T[172-191] . - T[512-531] . |
| CDD |
CSP_DNA-bd (IPR002059) - T[36-88] 3.56803E-9 - T[159-222] 4.12039E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 40.452 % | 502 | 2.0E-167 |