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- Transcript 'Cisavi.CG.ENS81.R76....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R76.1995169-2024065.13972.t
Possible name(s)
CSDE1
Gene model
Location
R76 [1,999,469 / 2,022,648]
Amino acid sequence
Length: 757
>Cisavi.CG.ENS81.R76.1995169-2024065.13972.p
NSNGYRSRETGVIEKLLVSYGFIKCADREGRLFFHYSQFHGEAHTLHINDEIEFEVSMDT
RTGKPVAVQVVKLQKGTVVFEVLSEDRILGEVTNPAPPLSLIPGQNTMNAVPGGTTRKLG
SLSYERMGEFFFLHYSACDLTNPNLALLPGDKVSFNIATEKRTGVMRARKITLVERAPPK
RFNGIVTAMKESFGFIERSDIVKEIFFHYSEVLANVPDLHVGDHVEFSVQERNNKDVATE
IRLLPLGSVQLEEISNELYIRFGEKDRAANCLHTLCKGDQVSFLTITDKRNGQQRAAGVT
LLLEKTIIVSKEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCEMLDPAHHVRMSDEVQF
TVLLDPVAEKQRMHATRIKVLPKGSVIFHTVTDQAYTGIVETLPGASPNTVPKRNLEKFY
TVGANPADPTADTVARVPYASKDFKDWMDALSLKVGDTVEFKICEVKRTGAKSAVDIILL
TRHADFDPSRSRGCFGWISTLKDTFGFIESLDHGSEIFFHYSEMQAPIEKYKGWLPCHLS
HWNQSCFKSVDKIFHTSWIEPSSNYVHHITGKVLKPLKSVNPTQTSYQGLIEYKETDESG
DTTIKTILYSPLSLSDRRDFIQVGDKVTFQISSDVNTNCQRAANVNVNRETVRATVDSIK
GEFGFINYEVKGGDTTGGSGKLFFHMSEVRDATQSIVAGALVEFSVIYNQRSGKFSASKV
RVAEAQPKQQRPERLRLRSSCESSGPTVSVLRQPRGP
Nucleotide sequence
Length: 2,271
>Cisavi.CG.ENS81.R76.1995169-2024065.13972.t
AACAGTAACGGTTATCGCAGCCGCGAAACGGGCGTCATTGAAAAACTTCTCGTTTCCTAT
GGATTTATTAAGTGCGCGGACCGAGAGGGTCGTCTTTTCTTCCACTACAGTCAGTTCCAC
GGAGAAGCGCATACGCTGCATATTAATGATGAAATTGAATTCGAAGTCTCAATGGACACA
CGCACTGGCAAACCGGTGGCTGTGCAAGTCGTCAAGCTCCAGAAGGGAACCGTCGTATTC
GAAGTCCTTAGCGAGGACCGTATTCTCGGAGAAGTTACAAACCCAGCGCCCCCACTCTCC
CTTATCCCGGGACAGAACACGATGAACGCAGTCCCAGGGGGAACCACCAGAAAACTCGGC
AGTCTTTCATACGAGCGCATGGGTGAATTTTTCTTTCTCCACTACTCTGCCTGTGACCTT
ACCAATCCAAACTTAGCACTACTTCCCGGTGATAAAGTATCGTTCAACATTGCCACAGAA
AAAAGAACTGGCGTAATGAGAGCACGTAAGATAACGCTGGTGGAACGGGCACCTCCAAAA
AGGTTCAACGGCATCGTTACCGCAATGAAGGAATCCTTTGGGTTTATTGAGCGCTCTGAT
ATAGTTAAAGAGATATTTTTCCACTACAGCGAAGTGCTGGCTAATGTGCCAGACTTGCAT
GTCGGCGATCATGTCGAGTTTAGTGTTCAAGAACGAAATAATAAGGACGTAGCTACTGAA
ATCCGATTACTGCCTCTGGGTTCTGTGCAATTAGAAGAAATATCAAATGAACTGTACATA
CGATTCGGGGAAAAGGACAGAGCGGCGAACTGCTTACACACACTCTGCAAGGGAGATCAG
GTATCGTTCCTTACAATCACCGACAAGCGTAACGGGCAGCAACGCGCGGCGGGAGTTACG
CTTCTACTCGAAAAGACAATCATTGTGAGCAAGGAAAAGAGGGAACAGGGCATAGTGGCA
GCTGTAAAGGAAGGATTCGGGTTCATAAAATGTGTGGAGCGCGATTCCCGACTCTTCTTC
CACTGCTGCGAGATGCTCGATCCGGCTCACCATGTTAGGATGTCTGACGAAGTCCAGTTC
ACTGTGCTGCTCGACCCTGTGGCTGAAAAACAACGGATGCATGCTACAAGGATAAAAGTT
CTCCCAAAGGGATCTGTCATCTTCCACACGGTGACCGACCAAGCTTACACTGGGATAGTT
GAGACTCTACCAGGGGCTTCCCCTAATACAGTACCGAAAAGAAACCTTGAAAAATTCTAC
ACTGTCGGGGCTAACCCAGCTGACCCGACTGCGGACACAGTGGCACGAGTCCCGTATGCC
TCCAAGGATTTCAAGGACTGGATGGACGCTCTGAGTCTTAAAGTTGGCGACACTGTTGAG
TTCAAAATATGTGAGGTGAAGCGCACTGGGGCAAAAAGCGCCGTCGACATCATACTGCTG
ACTCGCCACGCCGATTTCGATCCCAGCAGGTCGCGGGGATGTTTCGGATGGATCAGCACA
TTGAAAGATACTTTCGGGTTCATCGAGTCACTTGACCACGGGAGTGAGATATTCTTCCAC
TACAGCGAGATGCAAGCTCCGATCGAAAAGTACAAAGGCTGGCTGCCCTGTCACTTATCT
CACTGGAATCAAAGCTGTTTTAAATCAGTTGACAAAATATTTCATACTAGTTGGATTGAA
CCAAGTTCCAACTATGTCCACCATATTACAGGCAAAGTGCTGAAACCACTAAAATCGGTC
AACCCAACACAAACCAGCTACCAAGGATTGATTGAATACAAGGAGACTGATGAGAGTGGT
GATACGACCATCAAAACGATCCTGTATAGCCCTCTAAGCCTCAGCGATCGCAGGGATTTC
ATCCAAGTTGGAGACAAGGTTACCTTCCAGATCAGCTCAGATGTGAACACAAACTGCCAA
CGTGCTGCTAACGTCAACGTCAACAGAGAAACCGTCCGCGCCACTGTGGACAGCATTAAA
GGAGAGTTCGGTTTCATAAACTACGAGGTGAAGGGGGGCGACACCACTGGAGGCAGTGGC
AAGCTGTTCTTTCACATGTCCGAGGTGCGGGACGCCACGCAGTCGATCGTGGCTGGCGCT
TTGGTCGAGTTCTCAGTGATTTATAACCAGAGAAGTGGCAAATTCTCAGCGTCGAAAGTG
CGCGTGGCAGAAGCGCAACCGAAGCAGCAACGCCCAGAGCGATTGAGGCTGCGCAGCTCG
TGCGAGTCCAGCGGCCCGACCGTGTCCGTGCTCCGTCAGCCCAGGGGACCA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[6-78] 3.43E-16 - T[180-245] 1.17E-14 - T[306-385] 3.96E-13 - T[494-528] 2.43E-6 - T[652-723] 4.29E-10 |
| SMART |
CSD (IPR011129) - T[10-73] 3.2E-11 - T[183-244] 4.1E-13 - T[316-381] 9.5E-4 - T[653-723] 0.01 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[10-72] 4.8E-12 - T[183-242] 2.0E-14 - T[316-376] 2.6E-6 - T[496-526] 5.6E-5 - T[654-721] 8.2E-6 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[20-39] . - T[193-212] . - T[505-524] . |
| CDD |
CSP_DNA-bd (IPR002059) - T[20-72] 4.76681E-9 - T[180-243] 5.77839E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 41.286 % | 506 | 4.45E-169 |