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TRANSCRIPT CARD

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  1. Clone 'cien112475'
  2. Clone 'cien45134'
  3. Clone 'cinc018h11'
  4. Transcript 'Cisavi.CG.ENS81.R77....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R77.1008359-1021104.05996.t

Possible name(s)

NONO; PSPC1; SFPQ

Location

R77 [1,008,358 / 1,021,104]

Sequences

Amino acid sequence

Length: 528

>Cisavi.CG.ENS81.R77.1008359-1021104.05996.p
MPANRYSGNNRSGGGGNNRYFNNNRNQQNSRRGPPNPHADMPPPPVPPVLNNMPPKMPTP
VPPVEIKTEISKSPNIPCKPEPVPPPNLSSQQPNTSLNDHNDSTASRPFERKFTQRSRLF
VGNLPPNTSEEEFKKLFHPFGEVSETFVNGDKGYGFVRLDTRSNAERAKWELDGKVIRAN
RTLRVRFATHGAALCVKNLSPYVSNELLEEAFSQFGTVERAVVVVDDRGKSMERGIVEFA
RKTSAAKALQQIRSGCFLLTTSPRAVVASPLEQEDTEDGLSERNIQRNQGYFHEREAPPR
FAQPKSFEEEFARRWKALYDLEKQQREHLEKNIQEAKEKLESEMENAIQDHQTMLMKQDL
MRRQDELQRLEEARKRELDRRQELEVARENARKKEMEGQNQRLDMLRAQIEGTYKPDLPP
PPSHPHPLPMGFNKPPGFGRPGSPLMPSQLQEQLTKELMGGQGGLAPAPSRFDQNRELAM
LSQRGIPGGMPPNIGRGFGGPSFGGPMGPGQRRGYEMEYEHNQKRRRY

Nucleotide sequence

Length: 1,668

>Cisavi.CG.ENS81.R77.1008359-1021104.05996.t
TTTCGTTGTGACTTTAGTAAAAAATGCCGGCGAATAGGTACAGTGGAAACAACCGAAGTG
GTGGTGGGGGGAACAATCGTTATTTCAACAACAATCGAAACCAGCAGAACAGTCGACGAG
GCCCACCTAACCCCCACGCAGATATGCCACCACCTCCAGTACCCCCCGTATTGAACAACA
TGCCACCGAAAATGCCCACACCTGTACCACCTGTTGAGATAAAGACGGAAATATCAAAAA
GCCCCAACATTCCATGCAAACCAGAGCCAGTGCCACCCCCAAATCTATCAAGCCAACAAC
CGAATACCAGTCTAAATGACCATAACGACTCAACAGCAAGCCGACCATTCGAGCGCAAAT
TCACCCAACGAAGTCGTCTCTTTGTCGGCAACCTTCCACCAAACACTTCAGAGGAGGAAT
TTAAGAAGCTTTTCCACCCCTTTGGCGAGGTGTCGGAAACATTTGTGAACGGAGACAAAG
GATATGGCTTTGTGAGGCTGGACACACGGTCAAATGCAGAGAGAGCAAAATGGGAATTGG
ATGGCAAAGTCATTCGAGCAAATCGCACATTGCGTGTGCGCTTCGCTACACATGGAGCTG
CACTTTGTGTTAAGAACCTGTCGCCATATGTTTCAAATGAGTTGCTTGAGGAAGCGTTCT
CACAGTTCGGAACCGTTGAGCGAGCCGTGGTTGTAGTTGACGACCGTGGAAAGTCAATGG
AGCGTGGCATTGTTGAGTTTGCGAGAAAAACATCGGCTGCAAAAGCACTGCAACAAATCA
GAAGCGGTTGCTTTCTTCTTACCACATCCCCAAGAGCAGTGGTCGCCTCTCCACTGGAGC
AAGAGGACACGGAGGATGGATTATCCGAGCGAAACATCCAAAGGAACCAGGGATACTTTC
ATGAGAGAGAAGCGCCCCCCCGATTCGCGCAACCGAAGAGCTTCGAGGAGGAGTTCGCGC
GTCGATGGAAAGCTCTCTACGACCTCGAGAAGCAGCAGCGAGAGCATCTCGAGAAGAACA
TCCAGGAAGCGAAGGAAAAACTCGAGAGCGAGATGGAAAACGCGATCCAGGATCACCAGA
CTATGCTCATGAAACAAGACCTAATGAGGAGACAGGATGAGCTTCAGCGTTTAGAGGAAG
CTCGCAAGCGTGAATTGGATCGAAGGCAGGAATTGGAAGTGGCGAGAGAAAATGCGAGAA
AAAAGGAAATGGAGGGACAAAACCAGAGACTCGACATGTTGCGAGCTCAAATTGAGGGGA
CATACAAACCAGATCTACCACCTCCACCGTCGCACCCACACCCTCTGCCAATGGGATTTA
ACAAGCCTCCAGGTTTCGGACGCCCAGGCAGTCCCCTCATGCCGTCACAATTGCAGGAAC
AACTGACAAAGGAATTGATGGGCGGACAAGGTGGTCTCGCTCCAGCACCGTCTCGATTTG
ATCAAAATCGTGAGCTGGCCATGCTCTCGCAAAGGGGGATTCCCGGTGGGATGCCCCCAA
ACATTGGAAGGGGTTTCGGGGGGCCCTCATTTGGGGGTCCAATGGGCCCCGGCCAACGTA
GGGGTTACGAAATGGAGTACGAACATAACCAAAAGCGCCGAAGATATTAAAGAGACAGTG
CCAGCCCATTGCGTAAACTGCTGGGGAAAATGCCCCCAAAAGCTTGAC

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[96-192] 4.4E-22 - T[193-281] 1.7E-20
ProSiteProfiles
RRM_dom (IPR000504) - T[117-190] 18.172 - T[192-273] 11.742
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[117-251] 2.45E-33
SMART
RRM_dom (IPR000504) - T[118-186] 1.7E-17 - T[193-261] 6.7E-9
Pfam
RRM_dom (IPR000504) - T[119-180] 8.2E-15 - T[194-252] 9.9E-14
Pfam
NOPS (IPR012975) - T[266-316] 3.2E-21

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NONO_HUMAN 45.413 % 331 2.17E-108
SFPQ_HUMAN 56.41 % 343 2.63E-110
PSPC1_HUMAN 61.786 % 330 2.86E-107