- Clone 'cima819920' >
- Transcript 'Cisavi.CG.ENS81.R77....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R77.1008359-1021104.05996.t
Possible name(s)
NONO; PSPC1; SFPQ
Gene model
Location
R77 [1,008,358 / 1,021,104]
Amino acid sequence
Length: 528
>Cisavi.CG.ENS81.R77.1008359-1021104.05996.p
MPANRYSGNNRSGGGGNNRYFNNNRNQQNSRRGPPNPHADMPPPPVPPVLNNMPPKMPTP
VPPVEIKTEISKSPNIPCKPEPVPPPNLSSQQPNTSLNDHNDSTASRPFERKFTQRSRLF
VGNLPPNTSEEEFKKLFHPFGEVSETFVNGDKGYGFVRLDTRSNAERAKWELDGKVIRAN
RTLRVRFATHGAALCVKNLSPYVSNELLEEAFSQFGTVERAVVVVDDRGKSMERGIVEFA
RKTSAAKALQQIRSGCFLLTTSPRAVVASPLEQEDTEDGLSERNIQRNQGYFHEREAPPR
FAQPKSFEEEFARRWKALYDLEKQQREHLEKNIQEAKEKLESEMENAIQDHQTMLMKQDL
MRRQDELQRLEEARKRELDRRQELEVARENARKKEMEGQNQRLDMLRAQIEGTYKPDLPP
PPSHPHPLPMGFNKPPGFGRPGSPLMPSQLQEQLTKELMGGQGGLAPAPSRFDQNRELAM
LSQRGIPGGMPPNIGRGFGGPSFGGPMGPGQRRGYEMEYEHNQKRRRY
Nucleotide sequence
Length: 1,668
>Cisavi.CG.ENS81.R77.1008359-1021104.05996.t
TTTCGTTGTGACTTTAGTAAAAAATGCCGGCGAATAGGTACAGTGGAAACAACCGAAGTG
GTGGTGGGGGGAACAATCGTTATTTCAACAACAATCGAAACCAGCAGAACAGTCGACGAG
GCCCACCTAACCCCCACGCAGATATGCCACCACCTCCAGTACCCCCCGTATTGAACAACA
TGCCACCGAAAATGCCCACACCTGTACCACCTGTTGAGATAAAGACGGAAATATCAAAAA
GCCCCAACATTCCATGCAAACCAGAGCCAGTGCCACCCCCAAATCTATCAAGCCAACAAC
CGAATACCAGTCTAAATGACCATAACGACTCAACAGCAAGCCGACCATTCGAGCGCAAAT
TCACCCAACGAAGTCGTCTCTTTGTCGGCAACCTTCCACCAAACACTTCAGAGGAGGAAT
TTAAGAAGCTTTTCCACCCCTTTGGCGAGGTGTCGGAAACATTTGTGAACGGAGACAAAG
GATATGGCTTTGTGAGGCTGGACACACGGTCAAATGCAGAGAGAGCAAAATGGGAATTGG
ATGGCAAAGTCATTCGAGCAAATCGCACATTGCGTGTGCGCTTCGCTACACATGGAGCTG
CACTTTGTGTTAAGAACCTGTCGCCATATGTTTCAAATGAGTTGCTTGAGGAAGCGTTCT
CACAGTTCGGAACCGTTGAGCGAGCCGTGGTTGTAGTTGACGACCGTGGAAAGTCAATGG
AGCGTGGCATTGTTGAGTTTGCGAGAAAAACATCGGCTGCAAAAGCACTGCAACAAATCA
GAAGCGGTTGCTTTCTTCTTACCACATCCCCAAGAGCAGTGGTCGCCTCTCCACTGGAGC
AAGAGGACACGGAGGATGGATTATCCGAGCGAAACATCCAAAGGAACCAGGGATACTTTC
ATGAGAGAGAAGCGCCCCCCCGATTCGCGCAACCGAAGAGCTTCGAGGAGGAGTTCGCGC
GTCGATGGAAAGCTCTCTACGACCTCGAGAAGCAGCAGCGAGAGCATCTCGAGAAGAACA
TCCAGGAAGCGAAGGAAAAACTCGAGAGCGAGATGGAAAACGCGATCCAGGATCACCAGA
CTATGCTCATGAAACAAGACCTAATGAGGAGACAGGATGAGCTTCAGCGTTTAGAGGAAG
CTCGCAAGCGTGAATTGGATCGAAGGCAGGAATTGGAAGTGGCGAGAGAAAATGCGAGAA
AAAAGGAAATGGAGGGACAAAACCAGAGACTCGACATGTTGCGAGCTCAAATTGAGGGGA
CATACAAACCAGATCTACCACCTCCACCGTCGCACCCACACCCTCTGCCAATGGGATTTA
ACAAGCCTCCAGGTTTCGGACGCCCAGGCAGTCCCCTCATGCCGTCACAATTGCAGGAAC
AACTGACAAAGGAATTGATGGGCGGACAAGGTGGTCTCGCTCCAGCACCGTCTCGATTTG
ATCAAAATCGTGAGCTGGCCATGCTCTCGCAAAGGGGGATTCCCGGTGGGATGCCCCCAA
ACATTGGAAGGGGTTTCGGGGGGCCCTCATTTGGGGGTCCAATGGGCCCCGGCCAACGTA
GGGGTTACGAAATGGAGTACGAACATAACCAAAAGCGCCGAAGATATTAAAGAGACAGTG
CCAGCCCATTGCGTAAACTGCTGGGGAAAATGCCCCCAAAAGCTTGAC
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[96-192] 4.4E-22 - T[193-281] 1.7E-20 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[117-190] 18.172 - T[192-273] 11.742 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[117-251] 2.45E-33 |
| SMART |
RRM_dom (IPR000504) - T[118-186] 1.7E-17 - T[193-261] 6.7E-9 |
| Pfam |
RRM_dom (IPR000504) - T[119-180] 8.2E-15 - T[194-252] 9.9E-14 |
| Pfam |
NOPS (IPR012975) - T[266-316] 3.2E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NONO_HUMAN | 45.413 % | 331 | 2.17E-108 |
| SFPQ_HUMAN | 56.41 % | 343 | 2.63E-110 |
| PSPC1_HUMAN | 61.786 % | 330 | 2.86E-107 |