- Region 'REG00000819' >
- Transcript 'Cisavi.CG.ENS81.R828...' >
- Transcript 'Cisavi.CG.ENS81.R239...' >
- Transcript 'Cisavi.CG.ENS81.R828...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R828.13291-23078.01074.t
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
R828 [13,290 / 23,078]
Amino acid sequence
Length: 554
>Cisavi.CG.ENS81.R828.13291-23078.01074.p
MQTGSEFTSSGGGLRHQPEITLEQWENNGKNDDFFVDDVGDDVDDYDDDDDDDGIVLDCD
DDKDSFMEFDLLNNSGEIPERGKSDFPTSSLQELFSMTQSMTQSSGGHVTSSSQSAIDLN
DSGFAGGLGEVPTRATPSGNESLFELLSSEQGLQAKIPKCTGCAQHIFDRFILKVQDKPW
HAQCLKCGDCGRQLTDKCFSRGSFVYCKEDFFKRYGTKCAGCDEAIPPTEVVRRAQENVY
HLECFRCFMCNDQLGTGDQFYLLDDNRLVCKKDYETAKSRDIDMDNGIKRPRTTITAKQL
ETLKLAYNQSPKPARHVREQLSSDTGLDMRVVQVWFQNRRAKEKRLKKDTSRQRWGEIFR
SGAPSSGPQMHANPESPPSGGKRRPGNHNSRKRPSSSPGGSRISVPIPSSIQSPVHAPPN
GQIEPGFLAPEHLLPPSDGIMLGESPCFTPGELPYPQNPANPHFLSPGGIPDPMGPFHPQ
SYEYVDGPQMMGPGMAAMKLPVNNTMHNYYVTHKQQQPAKSDCDVISEGSGNLSDLSSSP
RSWLGELDHVTHFQ
Nucleotide sequence
Length: 2,161
>Cisavi.CG.ENS81.R828.13291-23078.01074.t
ATGCAAACCGGAAGTGAATTTACGTCATCAGGTGGCGGATTACGTCATCAACCGGAAATT
ACCTTGGAACAATGGGAAAACAATGGAAAGAATGACGACTTTTTCGTTGATGACGTAGGT
GATGACGTAGACGATTATGACGACGACGACGATGATGACGGAATAGTGCTCGATTGTGAC
GACGACAAAGACTCTTTCATGGAGTTCGATTTGCTGAATAATTCTGGGGAAATCCCCGAA
CGGGGAAAATCGGACTTTCCTACGTCATCACTTCAGGAACTTTTTTCGATGACGCAGTCG
ATGACGCAATCAAGTGGTGGTCACGTGACAAGCAGCAGCCAATCAGCAATTGATTTGAAC
GATTCAGGATTTGCTGGTGGGTTAGGGGAAGTCCCGACACGAGCGACACCTAGTGGAAAT
GAGTCGCTCTTTGAACTTCTCTCCTCCGAGCAAGGATTGCAAGCTAAGATACCGAAATGC
ACCGGCTGCGCGCAGCATATATTCGATCGCTTCATACTCAAGGTCCAGGACAAACCATGG
CACGCCCAGTGTCTCAAGTGCGGCGATTGCGGGCGCCAACTAACGGACAAATGTTTTTCA
CGGGGAAGTTTCGTGTATTGCAAGGAGGATTTCTTCAAACGCTATGGAACGAAATGCGCC
GGATGTGACGAAGCTATCCCACCGACAGAGGTGGTCCGCAGAGCTCAGGAGAATGTTTAT
CATCTTGAATGTTTCAGATGCTTCATGTGCAACGACCAGCTGGGCACCGGTGACCAATTC
TACTTGTTGGACGACAATAGACTGGTTTGCAAGAAAGATTACGAAACCGCTAAATCACGA
GATATTGACATGGACAATGGAATAAAGCGACCGCGAACGACAATCACTGCAAAACAACTG
GAAACACTAAAACTCGCTTACAATCAGTCCCCGAAACCCGCTCGCCACGTGAGAGAGCAA
TTGAGCTCTGATACAGGGCTCGACATGAGAGTTGTTCAGGTTTGGTTCCAGAACCGCCGA
GCAAAAGAGAAACGACTGAAGAAGGACACAAGTCGTCAGCGATGGGGAGAAATATTCCGC
TCCGGTGCGCCGTCTAGCGGTCCACAAATGCACGCTAACCCAGAATCGCCCCCCAGCGGA
GGAAAGCGTCGCCCTGGCAACCACAACAGCAGGAAACGACCCTCTAGCTCCCCTGGTGGA
AGTCGGATATCAGTTCCGATTCCGTCTTCAATTCAAAGTCCTGTACATGCGCCACCTAAC
GGTCAAATCGAGCCCGGCTTTCTCGCTCCCGAGCACCTGCTGCCACCCAGCGACGGTATC
ATGTTAGGTGAATCCCCTTGTTTCACCCCTGGCGAACTTCCTTACCCCCAGAACCCAGCC
AACCCTCATTTCCTATCCCCGGGGGGAATTCCCGACCCCATGGGTCCGTTTCACCCTCAA
AGTTACGAATATGTGGATGGTCCCCAAATGATGGGACCAGGAATGGCCGCCATGAAGCTA
CCGGTCAATAACACAATGCACAACTATTACGTAACACACAAGCAACAACAGCCCGCGAAA
AGCGATTGTGACGTCATATCGGAAGGAAGCGGGAATCTGAGCGATTTGTCGTCGAGCCCG
AGGTCATGGCTGGGTGAACTTGATCACGTGACGCATTTCCAGTAATTTAATTGGTCGAGA
AAAACTACACTGTGAGACGTATATCGCTTCGGGGAATTCCCTATATACGCAACTTTCTGA
CGTAACAATCCCACATTGTCAACATGGACTGGTTAGATATCTTGTGGCCGCAATTAGCTA
GTTGGATATAATATGTGTTATACTAACATTTTGAGATATTTTGTAATATTCACACCATTC
GCAAACTGTTCAAAGTGAAAGTTTTAAAATTCTAATGTGTTCCCTCAATATAACACACTT
CAAAAATTCATGTTTTTTTCAATCCATCGGGCAAGCTCGTATTGGATAGTTTGCAATATT
CACTTACCGTCCAAAATCAACCATACCCCCTCCCCCTCAATAATGGTGGACATACTGTAC
TTTGACATTGTACGATTCTTCAATCCTTGGCGCCGTTGGTTGCCAGCCCTATTACTGTGT
CCGCGTTGCAATACTATTTATGATTCGTGTTTATGTGCTCAATACAAAGTGATAGAAGTA
A
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[158-216] 11.652 - T[217-280] 14.068 |
| SMART |
Znf_LIM (IPR001781) - T[159-210] 1.1E-12 - T[218-273] 5.3E-18 |
| Pfam |
Znf_LIM (IPR001781) - T[160-214] 2.3E-12 - T[219-276] 4.5E-18 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[219-254] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[284-351] 2.82E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[286-346] 17.41 |
| SMART |
Homeobox_dom (IPR001356) - T[288-350] 3.3E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[289-345] 7.1E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[289-347] 5.54248E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[321-344] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 70.755 % | 331 | 3.34E-109 |
| LHX3_HUMAN | 47.88 % | 328 | 6.34E-108 |
| LHX5_HUMAN | 44.4 % | 237 | 7.57E-73 |