- Region 'REG00000819' >
- Transcript 'Cisavi.CG.ENS81.R828...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R828.13291-23078.01075.t
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
R828 [17,849 / 23,078]
Amino acid sequence
Length: 472
>Cisavi.CG.ENS81.R828.13291-23078.01075.p
MTSRAITSRVIASRYHPYKVSKPRRDSGLEFPPISAARPEVVGSIIPQTVPAEYEVERAE
SMEDFTDILSVLTKIPKCTGCAQHIFDRFILKVQDKPWHAQCLKCGDCGRQLTDKCFSRG
SFVYCKEDFFKRYGTKCAGCDEAIPPTEVVRRAQENVYHLECFRCFMCNDQLGTGDQFYL
LDDNRLVCKKDYETAKSRDIDMDNGIKRPRTTITAKQLETLKLAYNQSPKPARHVREQLS
SDTGLDMRVVQVWFQNRRAKEKRLKKDTSRQRWGEIFRSGAPSSGPQMHANPESPPSGGK
RRPGNHNSRKRPSSSPGGSRISVPIPSSIQSPVHAPPNGQIEPGFLAPEHLLPPSDGIML
GESPCFTPGELPYPQNPANPHFLSPGGIPDPMGPFHPQSYEYVDGPQMMGPGMAAMKLPV
NNTMHNYYVTHKQQQPAKSDCDVISEGSGNLSDLSSSPRSWLGELDHVTHFQ
Nucleotide sequence
Length: 1,968
>Cisavi.CG.ENS81.R828.13291-23078.01075.t
TGTATATCGAGTCAAGCCCGCTTTGCGATTCTACCAATTACCATGACGTCCGTATGACGT
CACGAGCGATTACGTCACGAGTGATAGCGTCACGCTACCATCCGTATAAAGTGTCGAAAC
CTCGCCGGGATTCAGGGCTCGAGTTCCCGCCGATCTCCGCCGCTCGTCCCGAGGTCGTTG
GATCGATAATTCCGCAAACTGTCCCGGCGGAATACGAGGTCGAAAGGGCGGAATCGATGG
AAGACTTCACCGACATATTGAGTGTTTTGACTAAGATACCGAAATGCACCGGCTGCGCGC
AGCATATATTCGATCGCTTCATACTCAAGGTCCAGGACAAACCATGGCACGCCCAGTGTC
TCAAGTGCGGCGATTGCGGGCGCCAACTAACGGACAAATGTTTTTCACGGGGAAGTTTCG
TGTATTGCAAGGAGGATTTCTTCAAACGCTATGGAACGAAATGCGCCGGATGTGACGAAG
CTATCCCACCGACAGAGGTGGTCCGCAGAGCTCAGGAGAATGTTTATCATCTTGAATGTT
TCAGATGCTTCATGTGCAACGACCAGCTGGGCACCGGTGACCAATTCTACTTGTTGGACG
ACAATAGACTGGTTTGCAAGAAAGATTACGAAACCGCTAAATCACGAGATATTGACATGG
ACAATGGAATAAAGCGACCGCGAACGACAATCACTGCAAAACAACTGGAAACACTAAAAC
TCGCTTACAATCAGTCCCCGAAACCCGCTCGCCACGTGAGAGAGCAATTGAGCTCTGATA
CAGGGCTCGACATGAGAGTTGTTCAGGTTTGGTTCCAGAACCGCCGAGCAAAAGAGAAAC
GACTGAAGAAGGACACAAGTCGTCAGCGATGGGGAGAAATATTCCGCTCCGGTGCGCCGT
CTAGCGGTCCACAAATGCACGCTAACCCAGAATCGCCCCCCAGCGGAGGAAAGCGTCGCC
CTGGCAACCACAACAGCAGGAAACGACCCTCTAGCTCCCCTGGTGGAAGTCGGATATCAG
TTCCGATTCCGTCTTCAATTCAAAGTCCTGTACATGCGCCACCTAACGGTCAAATCGAGC
CCGGCTTTCTCGCTCCCGAGCACCTGCTGCCACCCAGCGACGGTATCATGTTAGGTGAAT
CCCCTTGTTTCACCCCTGGCGAACTTCCTTACCCCCAGAACCCAGCCAACCCTCATTTCC
TATCCCCGGGGGGAATTCCCGACCCCATGGGTCCGTTTCACCCTCAAAGTTACGAATATG
TGGATGGTCCCCAAATGATGGGACCAGGAATGGCCGCCATGAAGCTACCGGTCAATAACA
CAATGCACAACTATTACGTAACACACAAGCAACAACAGCCCGCGAAAAGCGATTGTGACG
TCATATCGGAAGGAAGCGGGAATCTGAGCGATTTGTCGTCGAGCCCGAGGTCATGGCTGG
GTGAACTTGATCACGTGACGCATTTCCAGTAATTTAATTGGTCGAGAAAAACTACACTGT
GAGACGTATATCGCTTCGGGGAATTCCCTATATACGCAACTTTCTGACGTAACAATCCCA
CATTGTCAACATGGACTGGTTAGATATCTTGTGGCCGCAATTAGCTAGTTGGATATAATA
TGTGTTATACTAACATTTTGAGATATTTTGTAATATTCACACCATTCGCAAACTGTTCAA
AGTGAAAGTTTTAAAATTCTAATGTGTTCCCTCAATATAACACACTTCAAAAATTCATGT
TTTTTTCAATCCATCGGGCAAGCTCGTATTGGATAGTTTGCAATATTCACTTACCGTCCA
AAATCAACCATACCCCCTCCCCCTCAATAATGGTGGACATACTGTACTTTGACATTGTAC
GATTCTTCAATCCTTGGCGCCGTTGGTTGCCAGCCCTATTACTGTGTCCGCGTTGCAATA
CTATTTATGATTCGTGTTTATGTGCTCAATACAAAGTGATAGAAGTAA
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[76-134] 11.652 - T[135-198] 14.068 |
| SMART |
Znf_LIM (IPR001781) - T[77-128] 1.1E-12 - T[136-191] 5.3E-18 |
| Pfam |
Znf_LIM (IPR001781) - T[78-132] 1.9E-12 - T[137-194] 3.6E-18 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[137-172] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[202-269] 2.22E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[204-264] 17.41 |
| SMART |
Homeobox_dom (IPR001356) - T[206-268] 3.3E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[207-265] 1.00666E-19 |
| Pfam |
Homeobox_dom (IPR001356) - T[207-263] 5.7E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[239-262] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 63.492 % | 333 | 2.44E-111 |
| LHX3_HUMAN | 46.667 % | 329 | 2.43E-109 |
| LHX5_HUMAN | 44.4 % | 236 | 4.28E-73 |