- Transcript 'KH2012:KH.C3.79.v7.R...' >
- Clone 'ciem828p18' >
- Transcript 'Phfumi.CG.MTP2014.S3...' >
- Transcript 'KH2012:KH.C3.74.v3.C...' >
- Transcript 'Cisavi.CG.ENS81.R90....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R90.318198-331613.16577.t
Possible name(s)
TBX4; TBX5; TBX6
Gene model
Location
R90 [318,197 / 331,613]
Amino acid sequence
Length: 767
>Cisavi.CG.ENS81.R90.318198-331613.16577.p
MIQESMKPGPISPLQAVMSAYNHSGMLPSRSGSDLPFFPPSYFPNLSMTHCASSLMFPKG
ANSVAGLGSAFDRGLCGTQAHDLPQSKLPDPDDNEPDDPQVDLDNMELWEQFHRRGTEMV
ITKTGRRMFPSFKVKVSGLSKSAKYIMLMDIVAADDCRYKFHNSRWMVAGKADPELPKRM
YIHPDSPATGVQWMNRPGVSFHKLKLTNNIADPHGHTILNSMHKYQPRFHVVRCGDLAKL
PYCAFRTYVFKEMQFIAVTAYQNEKITQLKIDHNPFAKGFRDSGSGKREKRRQHFHLQQQ
LVGSHKETSSNPHRHLYSNSDRTDCNVSTDDDTRANNSGSSTSSITSPIRTEKRGVDSAC
AVGDNSTKISRNSIADDEHLSTDEKSKNEVFKQERLPSPIKKSPEPSNHRDSPHSPLKPR
VKDSPMTSSSTLSSPIPIHPGLTGPGGYPNAFMPHLTPAAAYQFLHPSQMNALSAAMSSN
AGNPYSHLGSFNPALLQAVVNAGGMSSLHRPSSQTHSQFLAGLGAASSSQPLSSLFSNTP
PLSAFNPYANFFPYGSAAAAAALGFPPPAAGASSSSLPGGRAEPSSGRPISPLSLANRLY
RQTNGHHHSFNKTFTDQSSPPLLVPGMLPSSSPRIGANYNAKNSRFSPYAMPFFGFPSFR
THPGNEANGNRFDFSQLPRTQQSDSNDSKCRRSGSGSPMSSSSSPTTRVRTISESSDGAK
VEPCNRSPSGYHSPSISSAVQELRNMENLVSGLDKARRHEELRLNKV
Nucleotide sequence
Length: 2,304
>Cisavi.CG.ENS81.R90.318198-331613.16577.t
ATGATTCAAGAATCCATGAAGCCCGGACCGATTTCTCCTCTTCAGGCGGTGATGTCGGCT
TACAACCACTCCGGGATGTTGCCCTCTCGATCTGGAAGCGATCTTCCATTCTTCCCGCCT
TCTTATTTCCCAAATTTGTCAATGACGCACTGTGCATCGTCGCTAATGTTCCCGAAAGGT
GCGAATTCCGTAGCTGGACTGGGATCGGCGTTTGATCGCGGCTTATGCGGAACTCAGGCC
CATGACTTGCCGCAGAGTAAACTTCCGGACCCCGATGATAACGAACCGGATGATCCGCAA
GTGGACCTCGACAATATGGAACTCTGGGAACAATTCCACAGACGCGGAACTGAGATGGTG
ATAACGAAAACTGGAAGGCGGATGTTTCCTTCTTTCAAGGTGAAGGTGAGCGGCCTGAGC
AAAAGCGCCAAGTACATAATGCTCATGGACATCGTGGCTGCGGATGACTGCAGATATAAA
TTCCACAATTCAAGGTGGATGGTGGCTGGAAAGGCCGACCCAGAGTTGCCAAAACGAATG
TACATTCACCCTGATTCACCAGCCACAGGGGTGCAGTGGATGAATCGACCCGGAGTGTCG
TTCCACAAACTCAAACTCACCAACAACATAGCGGATCCACACGGTCATACAATTCTGAAC
TCCATGCACAAGTATCAGCCTCGTTTCCACGTTGTTCGATGTGGAGACCTTGCCAAACTG
CCATATTGTGCATTCAGGACATATGTCTTCAAAGAGATGCAGTTCATCGCTGTGACAGCC
TACCAGAATGAGAAGATAACTCAACTCAAAATTGACCACAATCCGTTTGCGAAGGGATTC
AGGGATTCTGGCAGCGGGAAACGAGAAAAAAGAAGACAGCACTTCCACCTGCAGCAGCAG
TTAGTTGGAAGTCACAAGGAAACCTCAAGCAACCCACACCGGCACCTATACTCAAATTCC
GATCGAACAGATTGTAATGTTTCTACTGATGACGACACAAGAGCAAACAACAGTGGTAGC
AGTACTTCATCGATTACGTCACCAATTCGAACCGAAAAACGGGGAGTAGATTCCGCGTGC
GCCGTAGGAGACAATTCAACGAAAATATCGCGAAACTCGATCGCGGACGACGAGCATTTG
AGCACGGATGAAAAATCCAAGAATGAAGTTTTCAAACAAGAGAGATTACCATCGCCGATC
AAAAAAAGCCCTGAACCAAGCAACCATCGAGACTCACCACATTCGCCCCTCAAACCTCGA
GTCAAAGACTCCCCAATGACATCATCAAGTACTCTGTCATCACCAATTCCAATCCACCCA
GGTTTAACAGGTCCAGGTGGTTATCCTAATGCATTTATGCCGCACTTAACGCCAGCAGCT
GCATACCAGTTCCTACACCCAAGTCAAATGAATGCACTGAGTGCTGCAATGTCAAGTAAC
GCAGGGAACCCTTACTCCCACCTCGGTTCTTTTAACCCAGCTCTACTTCAAGCTGTGGTG
AATGCAGGGGGGATGTCGTCGCTCCACCGTCCTTCCTCACAAACTCATTCCCAGTTTCTT
GCTGGGCTCGGTGCAGCTTCATCGTCCCAACCACTATCTTCATTATTCTCCAATACTCCA
CCGCTTTCTGCTTTTAATCCTTACGCTAACTTCTTCCCATATGGATCAGCAGCAGCTGCA
GCAGCGCTAGGGTTTCCTCCTCCGGCTGCTGGCGCATCTTCTTCTTCCCTTCCAGGCGGA
AGAGCCGAACCATCATCTGGAAGACCAATTTCCCCCTTGTCTTTAGCCAACCGGCTGTAC
CGACAGACCAACGGCCACCATCATTCCTTCAACAAAACCTTCACCGACCAGTCTTCACCG
CCTCTGCTTGTTCCTGGGATGCTTCCTTCATCATCACCGAGAATAGGAGCAAACTACAAC
GCTAAAAACTCGCGATTCTCCCCTTATGCGATGCCATTTTTCGGTTTTCCTTCATTTCGT
ACGCACCCCGGTAACGAAGCAAATGGGAACCGATTCGATTTTTCCCAACTTCCCCGAACG
CAGCAATCCGATTCGAATGATTCAAAATGTCGTAGATCCGGCTCAGGTTCACCAATGTCT
TCCTCTTCATCTCCTACAACAAGAGTCAGAACGATCTCAGAATCGTCTGACGGAGCAAAA
GTGGAGCCGTGTAATAGATCGCCCAGCGGCTACCACAGTCCGTCCATTTCCTCAGCGGTC
CAGGAGTTAAGAAATATGGAGAACTTGGTTTCTGGTTTAGATAAAGCCCGGCGACACGAA
GAACTTAGATTAAACAAAGTATAG
| PANTHER |
TF_T-box (IPR001699) - T[89-582] 3.5E-152 - T[639-758] 3.5E-152 |
| Gene3D |
T-box_sf (IPR036960) - T[96-288] 2.3E-94 |
| SMART |
TF_T-box (IPR001699) - T[98-287] 5.7E-120 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[99-282] 3.98E-76 |
| CDD |
TF_T-box (IPR001699) - T[100-284] 9.05859E-119 |
| Pfam |
TF_T-box (IPR001699) - T[101-282] 1.9E-82 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[103-282] 72.67 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[108-127] . |
| PRINTS |
TF_T-box (IPR001699) - T[116-140] 2.2E-38 - T[181-194] 2.2E-38 - T[218-232] 2.2E-38 - T[253-266] 2.2E-38 - T[274-282] 2.2E-38 |
| PRINTS |
TF_Brachyury (IPR002070) - T[161-181] 1.5E-5 - T[223-240] 1.5E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX6_HUMAN | 47.28 % | 240 | 1.37E-71 |
| TBX4_HUMAN | 62.434 % | 251 | 1.21E-74 |
| TBX5_HUMAN | 63.978 % | 248 | 1.26E-73 |