- Transcript 'KH2012:KH.C5.42.v2.A...' >
- Transcript 'Boleac.CG.SB_v3.S26....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S26.g06189.01.t
Possible name(s)
CDH2; CDH4; CDH7
Gene model
Location
S26 [403,465 / 405,772]
Amino acid sequence
Length: 768
>Boleac.CG.SB_v3.S26.g06189.01.p
MGLLRIYLIATIAVVTVLECSRADWAYPDIQVKEGPMDQPKVFIVRIHSENTATRSYEIS
GDYSNEFEIDTTSGNIFQIEPLDRETKPVYNITARSFDGNNVPTESPVSFKVIVTDINDN
KPVFXESTLTGTIEEGHVTGSSSQPFMRIQATDADLGYKGDIRYSIEAGSDIPPSTSGSR
FAIDDVTGNVRLIGALDYETDPEVRFTVVATDGGGLQGVATFVTKKQVVVTVTDSNDFAP
VFQSFQDKALSEVSNLNTPLYNIYATDQDEGVNKKVYFEITGGNTGGTFTMISQPSDTGP
SMGQLQLLKNLDFESGVTKYTLTITAYNKEASNADAYTTTAILKINVTDANEPPIFRNTP
YADTITEGPAPVEPVPLQVTVLAEDIDFGGNQTVTYSLSDPENWFQVDALTGHVSLVGAV
DREAQSVVNGVYLLRVMATDNYDNGPQATGGEDIAITINDINDNPPMPDWGQEGASAVVC
EKPTNKTVRVITATDPDSAANGPKFTFRYDDSVDTSLWGFEEVDDESQKVVAKFSDYGLS
SGSATVALKFTITDSGTIPQTGTATLTVTVCKCGDDGRATCSGATAAGFPVAIIIAIIAV
ILLIAILIFAVVAYKRRQDAMMLKEPFFDDEDDIHETVQVYQEECGEEDQDAYDLSALRA
PLMAPQDQPVRKEVVPIQQVSRPPRGNQPDDISNIIGEAKDQADGDPSAPPFDSLLVFDY
EGAGSDAGSLSSINTATTDGSMDYDYLNEWGPRFKRLADMYNDGSESE
Nucleotide sequence
Length: 2,307
>Boleac.CG.SB_v3.S26.g06189.01.t
ATGGGATTGCTAAGGATATATCTCATAGCCACCATAGCTGTGGTTACTGTGCTGGAATGC
TCAAGGGCAGATTGGGCATACCCTGACATCCAAGTCAAAGAAGGCCCGATGGATCAACCA
AAAGTCTTTATTGTGAGGATACATTCAGAAAATACTGCTACACGATCATATGAAATCAGT
GGTGATTATAGTAATGAATTCGAGATTGACACCACTTCAGGAAACATATTTCAGATTGAA
CCTCTTGATCGTGAAACGAAGCCTGTGTATAACATCACTGCACGTTCATTTGATGGAAAT
AATGTCCCAACCGAATCTCCTGTATCTTTCAAAGTCATTGTTACGGATATAAATGATAAT
AAGCCGGTATTTGANGAGTCTACTCTCACCGGAACCATAGAAGAAGGACATGTGACTGGA
TCCAGCTCTCAACCGTTCATGCGAATTCAAGCCACAGACGCAGATTTAGGATATAAGGGG
GACATTAGATATTCGATTGAAGCTGGCAGTGATATTCCACCATCCACTAGTGGTAGCAGA
TTTGCCATTGATGACGTTACCGGCAATGTAAGATTGATTGGCGCTCTTGATTACGAAACA
GATCCAGAGGTTCGGTTTACTGTGGTTGCTACTGATGGGGGTGGACTTCAAGGCGTAGCC
ACTTTTGTGACAAAAAAGCAAGTGGTTGTGACAGTCACTGACTCCAACGATTTTGCTCCA
GTTTTTCAAAGTTTCCAGGACAAAGCATTATCTGAGGTTTCCAACCTCAATACACCACTG
TACAACATTTATGCCACTGACCAAGATGAAGGTGTAAACAAGAAGGTGTACTTTGAAATA
ACTGGTGGTAATACTGGTGGAACATTCACCATGATCTCGCAGCCATCTGACACTGGCCCA
AGCATGGGCCAGCTTCAGCTTCTGAAAAATTTAGACTTCGAAAGTGGTGTTACCAAGTAC
ACCTTGACCATCACTGCATACAATAAAGAGGCGTCAAATGCTGATGCATACACAACGACA
GCGATTTTGAAAATTAATGTAACTGATGCCAATGAGCCTCCTATTTTCAGAAACACGCCT
TATGCTGATACTATCACAGAAGGGCCAGCTCCTGTGGAGCCTGTTCCGCTACAAGTAACT
GTCCTGGCTGAAGATATAGACTTTGGTGGCAACCAGACTGTAACATATTCTCTGAGTGAT
CCTGAGAATTGGTTTCAAGTGGACGCCCTTACTGGACATGTCAGTCTTGTAGGTGCCGTA
GACCGTGAGGCACAGTCAGTTGTCAATGGAGTGTACCTTTTGAGAGTGATGGCTACTGAC
AACTATGACAATGGTCCTCAAGCAACTGGAGGTGAAGATATTGCTATCACCATCAATGAT
ATTAACGATAATCCTCCGATGCCAGACTGGGGTCAGGAAGGTGCTTCAGCTGTTGTTTGT
GAAAAGCCAACAAACAAAACCGTCAGGGTCATTACAGCGACGGACCCGGATTCAGCTGCC
AATGGTCCTAAATTTACTTTCAGATATGATGATTCAGTTGATACCAGCTTGTGGGGATTT
GAAGAAGTTGACGATGAGTCGCAGAAAGTTGTGGCGAAATTTTCTGATTATGGTCTTAGT
AGCGGATCTGCAACAGTGGCGCTGAAATTTACTATAACCGATTCTGGTACCATCCCTCAA
ACAGGAACGGCGACTCTCACGGTCACTGTATGTAAGTGTGGTGATGACGGTCGAGCCACA
TGCTCTGGTGCCACTGCTGCTGGTTTCCCAGTTGCGATTATCATTGCTATTATTGCAGTG
ATTCTGTTGATCGCAATCCTCATTTTTGCTGTTGTTGCTTACAAACGGCGACAAGATGCC
ATGATGTTGAAGGAGCCATTCTTTGATGATGAAGATGATATACACGAGACTGTTCAAGTA
TACCAAGAGGAATGCGGTGAAGAAGATCAGGATGCGTATGATCTCAGTGCCCTTAGGGCA
CCATTGATGGCACCACAAGATCAGCCTGTGAGAAAAGAAGTTGTGCCAATACAACAAGTA
TCAAGACCTCCACGTGGTAACCAACCAGACGACATATCTAACATCATTGGAGAAGCAAAG
GATCAAGCTGACGGTGACCCTAGTGCACCACCGTTTGACTCCCTCCTAGTCTTTGACTAT
GAAGGAGCTGGTTCAGATGCTGGTTCCCTATCTTCAATTAACACGGCTACTACCGATGGA
TCAATGGACTATGATTATCTAAATGAATGGGGACCCAGATTCAAACGACTAGCTGATATG
TACAATGACGGGTCTGAATCGGAGTAA
| Pfam |
Cadherin (IPR002126) - T[30-114] 4.4E-9 - T[142-232] 2.5E-12 - T[251-347] 5.5E-11 - T[379-450] 1.6E-10 |
| SMART |
Cadherin (IPR002126) - T[45-122] 4.5E-13 - T[149-240] 4.2E-21 - T[263-355] 2.8E-11 - T[381-466] 3.1E-17 - T[491-578] 0.76 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[50-124] 2.62E-13 - T[112-244] 4.19E-22 - T[236-349] 8.51E-15 - T[352-467] 7.85E-18 - T[461-571] 2.57E-9 |
| PRINTS |
Cadherin (IPR002126) - T[65-84] 1.4E-17 - T[103-122] 1.4E-17 - T[122-135] 1.4E-17 - T[186-212] 1.4E-17 - T[450-467] 1.4E-17 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[112-122] . - T[456-466] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[625-763] 3.6E-40 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[670-767] 1.1E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 33.588 % | 306 | 1.04E-91 |
| CADH2_HUMAN | 33.461 % | 288 | 4.28E-85 |
| CADH7_HUMAN | 32.478 % | 287 | 1.13E-85 |