- Transcript 'Phfumi.CG.MTP2014.S6...' >
- Clone 'cign032j03' >
- Transcript 'Cisavi.CG.ENS81.R978...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R978.167561-174143.08419.t
Possible name(s)
DAW1; PAFAH1B1; SPAG16
Gene model
Location
R978 [167,560 / 174,131]
Amino acid sequence
Length: 497
>Cisavi.CG.ENS81.R978.167561-174143.08419.p
PEVIDDFVRNFLLRMGMKRTLETFQTEWYEMQQKGQLGEEDTGIVPDAYCSKAKETYVQL
QKGRDFHRVNHKRVVQEKNRLITDIKRLKKHYTSYEPTLRLLKQKYEIAMKEKMLTKLER
DRAVGQPSFFSTLRNLESGKEVVLPQVAGYREGPTQSALREGRTGKGGEEGKPQATHPQD
SEFPSDTRVNPYLTLVKGPPTHLTRTGGFRQTGSIRGHELSVSSVSLHPRKQIAVTTSDD
HLWKMWGPSGDIIMTGEGHTDWVSDSDFHPGGAQLATSSGDSCVKIWDFSQASCVLTLSD
HTHAVWGVTWHSCGDFLASCSMDNTSKIWDVHSERCRSTLRGHADSVNSIQFLHFANTLL
TSSADKTLSLWDARTGLCAQTFYGHMHSVNHAVFNLKGDTIASCDSYGTVKFWDVRHVAP
MITVDVGPHPANRVAFDPSGHLLAVASNDGTIKTVEIGTSDVTMLAGHDDAVQAVTFDLG
GQFMLSGGSDGTLRVWS
Nucleotide sequence
Length: 1,552
>Cisavi.CG.ENS81.R978.167561-174143.08419.t
CCGGAGGTGATCGATGACTTTGTTCGCAACTTCCTCCTCCGAATGGGGATGAAGAGAACG
TTGGAGACGTTCCAAACCGAGTGGTACGAGATGCAGCAGAAGGGGCAACTTGGGGAGGAA
GATACCGGGATCGTACCTGATGCATACTGCAGCAAAGCGAAAGAGACGTACGTGCAACTA
CAAAAAGGACGGGATTTCCACCGAGTCAACCACAAACGAGTTGTTCAGGAGAAAAATAGA
TTGATCACTGATATAAAGAGATTAAAGAAGCACTACACCTCATACGAACCCACCCTACGA
TTGTTGAAACAAAAATATGAGATTGCGATGAAAGAGAAAATGTTGACCAAACTTGAACGA
GACCGAGCTGTTGGACAGCCTTCTTTCTTTTCAACGCTACGGAACCTGGAAAGCGGGAAG
GAGGTGGTGCTCCCTCAAGTGGCGGGATATCGGGAGGGGCCGACACAATCTGCGCTCCGA
GAGGGGAGGACGGGGAAGGGGGGTGAGGAGGGGAAACCCCAAGCCACCCATCCACAGGAC
AGCGAGTTCCCGTCAGACACCCGGGTCAACCCATACCTCACCCTCGTGAAGGGCCCCCCC
ACACATCTCACCCGAACTGGGGGTTTCCGCCAAACGGGGTCAATCAGAGGTCATGAACTT
TCCGTCAGCAGTGTATCGTTGCATCCTCGGAAGCAAATCGCCGTGACGACGTCCGACGAC
CATTTATGGAAGATGTGGGGCCCCAGTGGTGACATCATAATGACCGGGGAGGGGCACACC
GATTGGGTCTCCGACTCCGACTTTCACCCAGGCGGAGCACAACTAGCGACATCGAGTGGA
GATTCATGTGTGAAGATCTGGGATTTCTCGCAAGCGTCGTGCGTTCTCACGTTATCGGAC
CACACACACGCTGTGTGGGGGGTGACGTGGCATTCGTGCGGGGATTTCCTCGCTTCATGC
TCCATGGACAACACGTCTAAGATATGGGATGTTCATAGTGAGAGATGTCGATCCACGCTA
CGCGGTCACGCCGATTCCGTTAATAGCATCCAATTCCTACATTTCGCTAACACTCTGCTG
ACATCTAGTGCTGATAAAACACTCTCGTTGTGGGACGCTCGGACGGGACTCTGTGCACAA
ACCTTCTACGGCCACATGCATTCAGTCAACCATGCAGTCTTCAACCTGAAGGGTGATACG
ATCGCGTCATGTGACAGCTACGGAACCGTCAAGTTCTGGGACGTTCGTCACGTCGCCCCC
ATGATCACCGTGGACGTGGGGCCTCACCCCGCTAACCGGGTCGCCTTTGACCCCTCAGGG
CATCTACTGGCGGTTGCTAGTAACGACGGGACAATTAAGACGGTCGAGATCGGTACTAGT
GATGTCACAATGCTGGCAGGTCACGATGACGCGGTCCAAGCGGTGACCTTTGACCTCGGG
GGTCAATTCATGTTGAGTGGGGGTTCGGACGGGACTTTGCGTGTTTGGTCATAATCACCT
TTGTGACATCATCGTTATATGTAACCATGTTTCTACTTTTGTTAATAAAGTT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[202-312] 1.4E-24 - T[313-428] 4.0E-30 - T[429-497] 2.3E-15 |
| SMART |
WD40_repeat (IPR001680) - T[208-247] 0.012 - T[249-288] 2.4E-8 - T[291-330] 8.1E-9 - T[333-372] 3.5E-8 - T[375-414] 7.6E-5 - T[417-456] 0.36 - T[458-497] 1.5E-6 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[209-496] 2.38E-70 |
| Pfam |
WD40_repeat (IPR001680) - T[211-246] 0.22 - T[253-288] 1.3E-4 - T[293-330] 6.2E-6 - T[335-372] 6.9E-6 - T[378-414] 0.0016 - T[432-453] 0.19 - T[464-497] 6.8E-5 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[215-497] 51.965 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[215-246] 10.074 - T[256-297] 13.683 - T[298-339] 13.349 - T[340-381] 14.285 - T[382-423] 9.74 - T[465-497] 16.156 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[275-289] . - T[317-331] . - T[359-373] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[317-331] 3.6E-7 - T[359-373] 3.6E-7 - T[484-497] 3.6E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1B_HUMAN | 31.228 % | 135 | 1.35E-34 |
| SPG16_HUMAN | 49.156 % | 524 | 0 |
| LIS1_HUMAN | 32.117 % | 142 | 9.37E-38 |