- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C9.274.v1....' >
- Transcript 'Cisavi.CG.ENS81.R978...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R978.167561-174143.08420.t
Possible name(s)
DAW1; PAFAH1B1; SPAG16
Gene model
Location
R978 [167,561 / 174,143]
Amino acid sequence
Length: 526
>Cisavi.CG.ENS81.R978.167561-174143.08420.p
VTHRPEVIDDFVRNFLLRMGMKRTLETFQTEWWVVGNPHVGEPSCVVGNPHATHPTNPHP
PQVRDAAEGATWGGRYRDQTYVQLQKGRDFHRVNHKRVVQEKNRLITDIKRLKKHYTSYE
PTLRLLKQKYEIAMKEKMLTKLERDRAVGQREGGGAPSSGGISGGADTICAPRGEDGEGG
KCVLSPLLTPIPPGQRVPVRHPGQPIPHPREGPPHTSHPNWGFPPNGVNQRGFVGDLGCL
LLILRNNSLPPPSVSLHPRKQIAVTTSDDHLWKMWVPSGDIIMTGEGHTDWVSDSDFHPG
GAQLATSSGDSCVKIWDFSQASCVLTLSDHTHAVWGVTWHSCGDFLASCSMDNTSKIWDV
HSERCRSTLRGHADSVNSIQFLHFANTLLTSSADKTLSLWDARTGLCAQTFYGHMHSVNH
AVFNLKGDTIASCDSYGTVKFWDVRHVAPMITVDVGPHPANRVAFDPSGHLLAVASNDGT
IKTVEIGTSDVTMLAGHDDAVQAVTFDLGGQFMLSGGSDGTLRVWS
Nucleotide sequence
Length: 1,638
>Cisavi.CG.ENS81.R978.167561-174143.08420.t
GTGACTCATCGGCCGGAGGTGATCGATGACTTTGTTCGCAACTTCCTCCTCCGAATGGGG
ATGAAGAGAACGTTGGAGACGTTCCAAACCGAGTGGTGGGTAGTGGGGAACCCCCATGTT
GGGGAACCCTCATGTGTAGTGGGGAACCCCCATGCCACCCACCCTACTAACCCACACCCA
CCCCAGGTACGAGATGCAGCAGAAGGGGCAACTTGGGGAGGAAGATACCGGGATCAGACG
TACGTGCAACTACAAAAAGGACGGGATTTCCACCGAGTCAACCACAAACGAGTTGTTCAG
GAGAAAAATAGATTGATCACTGATATAAAGAGATTAAAGAAGCACTACACCTCATACGAA
CCCACCCTACGATTGTTGAAACAAAAATATGAGATTGCGATGAAAGAGAAAATGTTGACC
AAACTTGAACGAGACCGAGCTGTTGGACAGCGGGAAGGAGGTGGTGCTCCCTCAAGTGGC
GGGATATCGGGAGGGGCCGACACAATCTGCGCTCCGAGAGGGGAGGACGGGGAAGGGGGT
AAATGTGTCCTATCCCCACTTCTGACCCCCATCCCCCCAGGACAGCGAGTTCCCGTCAGA
CACCCGGGTCAACCCATACCTCACCCTCGTGAAGGGCCCCCCCACACATCTCACCCGAAC
TGGGGGTTTCCGCCAAACGGGGTCAATCAGAGGGGGTTTGTGGGGGATTTGGGATGTTTG
TTGTTGATTCTGCGGAATAACTCTCTTCCCCCACCTAGTGTATCGTTGCATCCTCGGAAG
CAAATCGCCGTGACGACGTCCGACGACCATTTATGGAAGATGTGGGTTCCCAGTGGTGAC
ATCATAATGACCGGGGAGGGGCACACCGATTGGGTCTCCGACTCCGACTTTCACCCAGGC
GGAGCACAACTAGCGACATCGAGTGGAGATTCATGTGTGAAGATCTGGGATTTCTCGCAA
GCGTCGTGCGTTCTCACGTTATCGGACCACACACACGCTGTGTGGGGGGTGACGTGGCAT
TCGTGCGGGGATTTCCTCGCTTCATGCTCCATGGACAACACGTCTAAGATATGGGATGTT
CATAGTGAGAGATGTCGATCCACGCTACGCGGTCACGCCGATTCCGTTAATAGCATCCAA
TTCCTACATTTCGCTAACACTCTGCTGACATCTAGTGCTGATAAAACACTCTCGTTGTGG
GACGCTCGGACGGGACTCTGTGCACAAACCTTCTACGGCCACATGCATTCAGTCAACCAT
GCAGTCTTCAACCTGAAGGGTGATACGATCGCGTCATGTGACAGCTACGGAACCGTCAAG
TTCTGGGACGTTCGTCACGTCGCCCCCATGATCACCGTGGACGTGGGGCCTCACCCCGCT
AACCGGGTCGCCTTTGACCCCTCAGGGCATCTACTGGCGGTTGCTAGTAACGACGGGACA
ATTAAGACGGTCGAGATCGGTACTAGTGATGTCACAATGCTGGCAGGTCACGATGACGCG
GTCCAAGCGGTGACCTTTGACCTCGGGGGTCAATTCATGTTGAGTGGGGGTTCGGACGGG
ACTTTGCGTGTTTGGTCATAATCACCTTTGTGACATCATCGTTATATGTAACCATGTTTC
TACTTTTGTTAATAAAGT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[236-344] 1.8E-21 - T[346-526] 2.6E-48 |
| SMART |
WD40_repeat (IPR001680) - T[237-276] 45.0 - T[278-317] 2.4E-8 - T[320-359] 8.1E-9 - T[362-401] 3.5E-8 - T[404-443] 7.6E-5 - T[446-485] 0.36 - T[487-526] 1.5E-6 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[242-525] 1.08E-67 |
| Pfam |
WD40_repeat (IPR001680) - T[282-317] 1.4E-4 - T[322-359] 6.7E-6 - T[364-401] 7.5E-6 - T[407-443] 0.0017 - T[461-482] 0.2 - T[493-526] 7.3E-5 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[285-326] 13.683 - T[327-368] 13.349 - T[369-410] 14.285 - T[411-452] 9.74 - T[494-526] 16.156 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[285-526] 49.962 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[304-318] . - T[346-360] . - T[388-402] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[346-360] 4.1E-7 - T[388-402] 4.1E-7 - T[513-526] 4.1E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPG16_HUMAN | 44.139 % | 456 | 4.89E-155 |
| DAW1_HUMAN | 30.796 % | 139 | 3.68E-36 |
| LIS1_HUMAN | 32.117 % | 142 | 1.89E-37 |