- Transcript 'KH2012:KH.C1.73.v4.A...' >
- Transcript 'Cisavi.CG.ENS81.R98....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R98.284679-309909.03582.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
R98 [284,678 / 309,888]
Amino acid sequence
Length: 1,073
>Cisavi.CG.ENS81.R98.284679-309909.03582.p
MTSQIPWILSMMSLCSLSAAIIEIPPEGKCTVPRPPTITMQPSDVTYAIPRVPIVLRCAA
SAQPDVKSIGGYSWEKNGSRLDIVKSTSGDVADGSIVMSQSDGSITFNENLSERELKQYE
GRYQCFASNDLGTAMTSAITLKAAASPYQRPENKEINVRTGASITVPCNYSSSNDRVITW
TFQPATVTYNERIAESADGSLVFANVLGSDNGLIFYSHYRFKTQTGKIYKNLIVYVYVIP
NMNTVTNIINLIFPAVPLPDRPPTITSPVLTTEPRIVLRDDTLRMKCIATGKPVPSVRWE
KLNGNSVVSWPNGRFRTEDFGRTAVISNASYGDSADYRCTATNALGEATRISKVLVHARP
FFSVPENAPHDVIKTPGSNVTIRCQAEGIPAPEVEWRVNGVPIAETSPMDNRVIHPTKIR
ISNLKVSDSAVYQCIASNMHNSIIKQAYVNVLISMPLPVSSEDVEYVQVLGKTVEMKCNV
FGSPSPAISWQKDGNKITENERFLIRKSKYLRISEVTFDDAGAYTCVATNEYGNATLSTS
LTVFRRTKIQPAAQYRYFVRRGESVTMSCVAFHPKVCWPIRPYKYDIPHLINPEETNVKS
ARLTLMTVWYKDHGSYKVMVNTSLDHAAVHLTLVVQEYKIEFEKDNYRPGKWFPLVDSIP
GDRTSFDVTLAAGLRYKFRLWALNGIGWSEAPSAETGSAPTANPSGVSGKGNTPTNMIIT
WDPVSPVGRNGPEFGYQITYCTAPDCTDKEVLYVDGEVESYEVVNLPTYTQYIINIMSYN
NIGNASVPQDVLGYSGEDAPGPPSTMRLRTTTDTGAHIAWGRPQEENGDVIGYVIKFVCL
NDSTEIGPISVEGTSYVTSQLRPNHMYDVTVAAQTLKGVGETANIVMSTMAGEGCTWPPL
PTHFRCFSDNELSMFDPDRLQLASPAASAGVVGEVWFIVLMCIIVLLLIIIVIVCLLRRR
KGGKYSVAEKEGQLVDQESQQIKSDEYNDETDDAKKPLKSPPPVNGKSTPPDISSAVPLR
TRGDSVAGDSIDAFGDDDAREFNEDGSFIGQYGAHESGESSAAATPADDNPVI
Nucleotide sequence
Length: 3,256
>Cisavi.CG.ENS81.R98.284679-309909.03582.t
TATTTCTTTAAGTTCTTATATATCTGGTTACGTAAAAATGACGTCACAAATACCTTGGAT
TTTAAGTATGATGTCACTATGCTCATTGAGCGCCGCAATAATCGAAATCCCACCTGAAGG
TAAATGTACAGTGCCCCGTCCTCCCACGATAACAATGCAGCCTAGTGACGTCACATACGC
CATCCCGCGCGTTCCCATTGTTCTCAGATGCGCCGCGAGTGCCCAACCTGACGTCAAATC
CATCGGAGGGTATTCGTGGGAAAAGAACGGATCGCGATTGGACATCGTTAAATCTACATC
CGGTGACGTAGCCGATGGAAGTATTGTGATGTCACAAAGCGATGGAAGCATAACTTTCAA
CGAGAATCTGAGCGAACGGGAGCTGAAGCAATACGAAGGAAGATATCAGTGTTTTGCCTC
CAATGATCTTGGAACCGCAATGACAAGCGCAATCACCTTGAAAGCGGCAGCATCGCCCTA
CCAGCGACCAGAAAACAAGGAAATCAATGTCCGTACCGGAGCTTCGATCACAGTACCCTG
CAATTACAGCAGTTCGAATGACCGAGTGATCACGTGGACGTTCCAACCAGCCACTGTGAC
GTATAATGAAAGAATTGCAGAGTCGGCGGACGGGAGTTTGGTATTCGCCAATGTATTGGG
TTCGGACAACGGACTGATCTTCTATTCCCATTATAGGTTCAAAACTCAGACTGGTAAAAT
ATACAAAAATCTCATCGTTTACGTTTATGTTATTCCAAATATGAACACAGTTACAAATAT
TATCAACTTAATATTTCCAGCTGTTCCACTGCCGGACCGCCCACCAACTATTACGTCACC
CGTCCTTACTACGGAACCACGAATTGTGCTCAGGGACGACACCTTACGGATGAAATGTAT
TGCTACGGGAAAACCGGTACCGAGTGTACGATGGGAGAAATTAAATGGAAATTCGGTCGT
TTCGTGGCCGAACGGTCGATTTCGAACTGAAGATTTCGGACGAACAGCTGTCATTAGCAA
CGCGAGTTATGGGGATAGCGCCGATTACAGGTGCACAGCTACGAATGCGTTGGGGGAGGC
GACGCGGATATCGAAGGTTCTGGTGCACGCTCGACCATTCTTCTCTGTCCCCGAAAATGC
GCCTCATGACGTCATAAAGACACCTGGTAGTAACGTCACAATACGATGTCAAGCGGAGGG
GATTCCCGCGCCGGAAGTCGAGTGGAGGGTGAACGGGGTTCCGATCGCAGAAACTTCCCC
GATGGATAACAGAGTGATCCATCCAACTAAAATTCGAATCAGCAATCTGAAGGTGTCTGA
CTCGGCCGTGTACCAATGCATCGCTAGCAACATGCATAACTCCATTATTAAACAAGCATA
TGTGAATGTGCTCATTTCTATGCCTTTGCCTGTATCGTCGGAAGACGTGGAATACGTGCA
AGTGTTGGGGAAAACTGTGGAGATGAAATGTAATGTGTTTGGGTCGCCCTCTCCCGCCAT
CTCGTGGCAGAAAGATGGAAACAAAATTACAGAAAACGAAAGGTTTCTTATACGGAAAAG
TAAATATCTTCGCATCAGTGAAGTAACATTCGACGATGCTGGAGCCTACACTTGCGTAGC
GACAAATGAATACGGGAACGCAACACTCAGCACCTCACTTACAGTGTTCCGTCGTACGAA
GATACAACCAGCTGCCCAATACCGCTATTTCGTCAGGCGGGGAGAATCAGTCACTATGTC
TTGCGTCGCCTTTCATCCGAAAGTGTGCTGGCCCATACGACCGTACAAATATGATATTCC
GCACTTAATAAACCCTGAAGAAACAAATGTCAAATCTGCCAGATTGACATTGATGACGGT
GTGGTACAAGGACCACGGAAGCTACAAGGTCATGGTTAACACCAGTCTTGACCACGCGGC
TGTGCACTTGACTCTGGTTGTTCAAGAATACAAGATAGAATTTGAGAAAGACAACTATCG
ACCGGGGAAGTGGTTTCCATTGGTCGATTCGATACCTGGCGACCGAACCTCTTTCGATGT
AACCTTGGCAGCTGGGTTGCGATATAAATTCCGCTTGTGGGCGCTAAACGGCATTGGGTG
GAGCGAGGCGCCCAGTGCTGAGACAGGCTCCGCTCCAACAGCAAACCCAAGTGGGGTGTC
GGGCAAGGGGAATACCCCAACCAATATGATCATCACGTGGGACCCGGTGAGCCCAGTGGG
GCGTAACGGACCGGAATTCGGGTACCAGATTACATACTGCACCGCTCCCGACTGTACCGA
CAAAGAAGTTCTTTATGTGGACGGGGAAGTCGAATCTTATGAAGTAGTCAACCTTCCAAC
ATACACCCAATACATCATTAACATTATGAGCTACAATAATATCGGTAACGCTTCCGTACC
GCAAGACGTACTGGGATACTCTGGCGAAGACGCCCCCGGCCCCCCATCTACTATGAGACT
CCGTACAACAACCGATACTGGGGCACACATTGCATGGGGACGCCCCCAAGAAGAGAATGG
TGATGTCATCGGCTATGTGATCAAATTCGTATGCTTGAACGATTCAACTGAAATTGGACC
AATCAGCGTCGAAGGTACATCTTACGTCACCTCTCAGTTGCGTCCGAATCATATGTATGA
CGTCACAGTGGCCGCGCAAACTTTAAAGGGGGTCGGTGAAACAGCAAACATTGTGATGTC
AACAATGGCGGGAGAAGGTTGCACATGGCCGCCCCTGCCAACTCATTTTCGTTGCTTCTC
GGATAACGAGTTGTCAATGTTCGATCCAGACAGATTACAGCTTGCTAGTCCGGCTGCGAG
CGCTGGGGTTGTCGGCGAAGTTTGGTTCATCGTGCTAATGTGCATCATTGTCCTGCTGCT
GATTATCATCGTCATAGTGTGCCTTCTTCGTCGACGGAAAGGCGGAAAGTATTCAGTTGC
AGAGAAAGAAGGACAGCTCGTGGATCAGGAATCCCAGCAGATTAAATCCGACGAATACAA
CGACGAAACAGACGACGCGAAGAAGCCATTGAAGAGTCCGCCGCCGGTGAACGGAAAATC
CACTCCTCCCGACATATCTTCCGCCGTTCCGCTGCGCACGCGTGGGGACAGTGTAGCCGG
CGATTCCATCGACGCGTTCGGTGACGACGACGCGCGAGAATTCAACGAGGATGGTTCGTT
CATCGGCCAGTACGGGGCGCACGAGAGCGGGGAAAGCAGCGCCGCAGCGACACCTGCCGA
CGACAATCCGGTGATA
| Gene3D |
Ig-like_fold (IPR013783) - T[24-143] 6.5E-15 - T[145-225] 3.8E-7 - T[259-366] 3.5E-15 - T[367-452] 8.5E-19 - T[459-544] 6.3E-21 - T[627-700] 2.9E-6 - T[701-798] 1.5E-17 - T[799-902] 3.8E-15 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[35-147] 2.32E-8 - T[153-213] 3.01E-7 - T[272-362] 3.9E-16 - T[358-451] 2.1E-17 - T[467-545] 8.69E-22 - T[557-635] 1.27E-5 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[36-140] 9.555 - T[263-352] 10.499 - T[360-450] 12.423 - T[456-542] 13.639 |
| SMART |
Ig_sub (IPR003599) - T[43-144] 140.0 - T[153-237] 5.1 - T[272-357] 7.2E-6 - T[369-452] 3.6E-11 - T[463-544] 3.7E-11 - T[554-636] 7.4 |
| SMART |
Ig_sub2 (IPR003598) - T[278-346] 3.3E-11 - T[375-441] 4.7E-11 - T[469-533] 4.9E-18 |
| Pfam |
Ig_I-set (IPR013098) - T[470-543] 3.0E-20 |
| SMART |
FN3_dom (IPR003961) - T[585-689] 58.0 - T[701-786] 7.1E-5 - T[800-880] 3.2E-9 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[612-702] 7.164 - T[703-801] 16.332 - T[802-894] 15.59 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[633-691] 3.33E-6 - T[704-890] 1.89E-27 |
| CDD |
FN3_dom (IPR003961) - T[635-696] 2.55609E-4 - T[703-783] 4.2756E-10 - T[800-886] 2.99168E-12 |
| Pfam |
FN3_dom (IPR003961) - T[703-783] 9.3E-8 - T[802-881] 5.7E-8 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[958-1055] 1.5E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 29.748 % | 336 | 2.22E-97 |
| NFASC_HUMAN | 28.62 % | 325 | 1.44E-93 |
| L1CAM_HUMAN | 28.29 % | 335 | 2.85E-97 |