- Transcript 'Cisavi.CG.ENS81.R98....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R98.284679-309909.03583.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
R98 [290,047 / 309,888]
Amino acid sequence
Length: 1,075
>Cisavi.CG.ENS81.R98.284679-309909.03583.p
LSERELKQYEGRYQCFASNDLGTAMTSAITLKAAASPYQRPENKEINVRTGASITVPCNY
SSSNDRVITWTFQPATVTYNERIAESADGSLVFANVLGSDNGLIFYCIVKDLATRKSTDG
PHYTLNVDNTVPLPDRPPTITSPVLTTEPRIVLRDDTLRMKCIATGKPVPSVRWEKLNGN
SVVSWPNGRFRTEDFGRTAVISNASYGDSADYRCTATNALGEATRISKVLVHARPFFSVP
ENAPHDVIKTPGSNVTIRCQAEGIPAPEVEWRVNGVPIAETSPMDNRVIHPTKIRISNLK
VSDSAVYQCIASNMHNSIIKQAYVNVLISMPLPVSSEDVEYVQVLGKTVEMKCNVFGSPS
PAISWQKDGNKITENERFLIRKSKYLRISEVTFDDAGAYTCVATNEYGNATLSTSLTVFR
RTKIQPAAQYRYFVRRGESVTMSVKVILEFVMIKYYLQWFKSDVLIGRGINYDVNNAAFT
DSGSYKVMVNTSLDHAAVHLTLVVQVSRNAPLSIDIPLPPLDFYVSPKSGGSPLDVTFTW
QPAEDNYSPIQEYKIEFEKDNYRPGKWFPLVDSIPGDRTSFDVTLAAGLRYKFRLWALNG
IGWSEAPSAETGSAPTANPSGVSGKGNTPTNMIITWDPVSPVGRNGPEFGYQITYCTAPD
CTDKEVLYVDGEVESYEVVNLPTYTQYIINIMSYNNIGNASVPQDVLGYSGEDVPLSAPS
DVTVETNEDDATVVIVRWQKVDPDSVRGKVLGYIVSYETPSSNELKERSVGDTDMTGIAG
LKPFTDYSFKVAVYNDYSSGPFSQSYVITTPESTPGPPSTMRLRTTTDTGAHIAWGRPQE
ENGDVIGYVIKFVCLNDSTEIGPISVEGTSYVTSQLRPNHMYDVTVAAQTLKGVGETANI
VMSTMAGEGCHGSYSTEKTGEGVPLAAAASAGVVGEVWFIVLMCIIVLLLIIIVIVCLLR
RRKGGKYSVAEKEGQLVDQESQQIKSDEYNDETDDAKKPLKSPPPVNGKSTPPDISSAVP
LRTRGDSVAGDSIDAFGDDDAREFNEDGSFIGQYGAHESGESSAAATPADDNPVI
Nucleotide sequence
Length: 3,225
>Cisavi.CG.ENS81.R98.284679-309909.03583.t
CTGAGCGAACGGGAGCTGAAGCAATACGAAGGAAGATATCAGTGTTTTGCCTCCAATGAT
CTTGGAACCGCAATGACAAGCGCAATCACCTTGAAAGCGGCAGCATCGCCCTACCAGCGA
CCAGAAAACAAGGAAATCAATGTCCGTACCGGAGCTTCGATCACAGTACCCTGCAATTAC
AGCAGTTCGAATGACCGAGTGATCACGTGGACGTTCCAACCAGCCACTGTGACGTATAAT
GAAAGAATTGCAGAGTCGGCGGACGGGAGTTTGGTATTCGCCAATGTATTGGGTTCGGAC
AACGGACTGATCTTCTATTGTATCGTGAAAGACCTGGCGACCAGAAAATCTACAGATGGA
CCGCATTATACACTAAATGTGGATAATACTGTTCCACTGCCGGACCGCCCACCAACTATT
ACGTCACCCGTCCTTACTACGGAACCACGAATTGTGCTCAGGGACGACACCTTACGGATG
AAATGTATTGCTACGGGAAAACCGGTACCGAGTGTACGATGGGAGAAATTAAATGGAAAT
TCGGTCGTTTCGTGGCCGAACGGTCGATTTCGAACTGAAGATTTCGGACGAACAGCTGTC
ATTAGCAACGCGAGTTATGGGGATAGCGCCGATTACAGGTGCACAGCTACGAATGCGTTG
GGGGAGGCGACGCGGATATCGAAGGTTCTGGTGCACGCTCGACCATTCTTCTCTGTCCCC
GAAAATGCGCCTCATGACGTCATAAAGACACCTGGTAGTAACGTCACAATACGATGTCAA
GCGGAGGGGATTCCCGCGCCGGAAGTCGAGTGGAGGGTGAACGGGGTTCCGATCGCAGAA
ACTTCCCCGATGGATAACAGAGTGATCCATCCAACTAAAATTCGAATCAGCAATCTGAAG
GTGTCTGACTCGGCCGTGTACCAATGCATCGCTAGCAACATGCATAACTCCATTATTAAA
CAAGCATATGTGAATGTGCTCATTTCTATGCCTTTGCCTGTATCGTCGGAAGACGTGGAA
TACGTGCAAGTGTTGGGGAAAACTGTGGAGATGAAATGTAATGTGTTTGGGTCGCCCTCT
CCCGCCATCTCGTGGCAGAAAGATGGAAACAAAATTACAGAAAACGAAAGGTTTCTTATA
CGGAAAAGTAAATATCTTCGCATCAGTGAAGTAACATTCGACGATGCTGGAGCCTACACT
TGCGTAGCGACAAATGAATACGGGAACGCAACACTCAGCACCTCACTTACAGTGTTCCGT
CGTACGAAGATACAACCAGCTGCCCAATACCGCTATTTCGTCAGGCGGGGAGAATCAGTC
ACTATGTCTGTTAAGGTAATTCTTGAGTTTGTAATGATAAAATATTATCTTCAATGGTTC
AAATCCGATGTTCTTATTGGACGAGGAATCAATTATGACGTCAACAATGCGGCATTCACG
GATAGCGGAAGCTACAAGGTCATGGTTAACACCAGTCTTGACCACGCGGCTGTGCACTTG
ACTCTGGTTGTTCAAGTATCACGAAATGCACCACTTTCCATAGATATCCCATTACCTCCG
CTGGATTTCTATGTTTCTCCCAAATCGGGGGGATCCCCCCTGGATGTAACGTTCACATGG
CAACCAGCTGAAGACAATTACTCCCCGATACAAGAATACAAGATAGAATTTGAGAAAGAC
AACTATCGACCGGGGAAGTGGTTTCCATTGGTCGATTCGATACCTGGCGACCGAACCTCT
TTCGATGTAACCTTGGCAGCTGGGTTGCGATATAAATTCCGCTTGTGGGCGCTAAACGGC
ATTGGGTGGAGCGAGGCGCCCAGTGCTGAGACAGGCTCCGCTCCAACAGCAAACCCAAGT
GGGGTGTCGGGCAAGGGGAATACCCCAACCAATATGATCATCACGTGGGACCCGGTGAGC
CCAGTGGGGCGTAACGGACCGGAATTCGGGTACCAGATTACATACTGCACCGCTCCCGAC
TGTACCGACAAAGAAGTTCTTTATGTGGACGGGGAAGTCGAATCTTATGAAGTAGTCAAC
CTTCCAACATACACCCAATACATCATTAACATTATGAGCTACAATAATATCGGTAACGCT
TCCGTACCGCAAGACGTACTGGGATACTCTGGCGAAGACGTTCCATTGTCTGCTCCAAGT
GATGTCACAGTTGAAACAAACGAAGATGACGCAACAGTGGTGATTGTGAGGTGGCAAAAA
GTTGACCCAGATTCAGTAAGAGGAAAAGTGCTGGGTTACATCGTGTCCTACGAGACACCT
TCAAGCAATGAACTGAAAGAAAGAAGTGTGGGCGACACCGATATGACAGGAATCGCTGGA
CTCAAACCTTTCACCGATTACTCGTTTAAAGTGGCCGTGTACAACGACTATTCCAGCGGA
CCATTCTCCCAATCCTACGTCATAACCACCCCTGAAAGCACCCCCGGCCCCCCATCTACT
ATGAGACTCCGTACAACAACCGATACTGGGGCACACATTGCATGGGGACGCCCCCAAGAA
GAGAATGGTGATGTCATCGGCTATGTGATCAAATTCGTATGCTTGAACGATTCAACTGAA
ATTGGACCAATCAGCGTCGAAGGTACATCTTACGTCACCTCTCAGTTGCGTCCGAATCAT
ATGTATGACGTCACAGTGGCCGCGCAAACTTTAAAGGGGGTCGGTGAAACAGCAAACATT
GTGATGTCAACAATGGCGGGAGAAGGTTGCCATGGTTCTTATTCTACTGAGAAAACCGGC
GAGGGCGTGCCGCTGGCTGCGGCTGCGAGCGCTGGGGTTGTCGGCGAAGTTTGGTTCATC
GTGCTAATGTGCATCATTGTCCTGCTGCTGATTATCATCGTCATAGTGTGCCTTCTTCGT
CGACGGAAAGGCGGAAAGTATTCAGTTGCAGAGAAAGAAGGACAGCTCGTGGATCAGGAA
TCCCAGCAGATTAAATCCGACGAATACAACGACGAAACAGACGACGCGAAGAAGCCATTG
AAGAGTCCGCCGCCGGTGAACGGAAAATCCACTCCTCCCGACATATCTTCCGCCGTTCCG
CTGCGCACGCGTGGGGACAGTGTAGCCGGCGATTCCATCGACGCGTTCGGTGACGACGAC
GCGCGAGAATTCAACGAGGATGGTTCGTTCATCGGCCAGTACGGGGCGCACGAGAGCGGG
GAAAGCAGCGCCGCAGCGACACCTGCCGACGACAATCCGGTGATA
| Gene3D |
Ig-like_fold (IPR013783) - T[36-132] 1.1E-9 - T[133-240] 3.5E-15 - T[241-327] 8.5E-19 - T[334-419] 6.3E-21 - T[514-616] 3.8E-13 - T[617-713] 1.6E-17 - T[714-815] 5.8E-19 - T[816-917] 1.5E-14 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[41-128] 7.722 - T[138-227] 10.499 - T[235-325] 12.423 - T[331-417] 13.639 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[43-113] 2.26E-8 - T[147-237] 3.24E-16 - T[233-326] 2.09E-17 - T[342-420] 8.78E-22 |
| SMART |
Ig_sub (IPR003599) - T[43-128] 0.012 - T[147-232] 7.2E-6 - T[244-327] 3.6E-11 - T[338-419] 3.7E-11 - T[429-505] 3.1 |
| SMART |
Ig_sub2 (IPR003598) - T[49-114] 2.0 - T[153-221] 3.3E-11 - T[250-316] 4.7E-11 - T[344-408] 4.9E-18 |
| Pfam |
Ig_I-set (IPR013098) - T[345-418] 3.0E-20 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[515-706] 7.11E-21 - T[717-905] 1.53E-33 |
| CDD |
FN3_dom (IPR003961) - T[517-611] 1.66645E-11 - T[618-698] 7.39631E-10 - T[717-810] 5.93007E-12 - T[815-901] 6.10603E-12 |
| SMART |
FN3_dom (IPR003961) - T[517-604] 2.8E-4 - T[616-701] 7.1E-5 - T[716-800] 1.9E-7 - T[815-895] 3.2E-9 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[519-617] 15.053 - T[618-717] 16.197 - T[718-813] 18.643 - T[817-909] 15.59 |
| Pfam |
FN3_dom (IPR003961) - T[618-698] 9.3E-8 - T[717-803] 5.8E-11 - T[817-896] 5.8E-8 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[960-1057] 1.5E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 30.664 % | 406 | 1.64E-122 |
| NFASC_HUMAN | 30.753 % | 399 | 2.04E-119 |
| NCHL1_HUMAN | 29.468 % | 457 | 3.79E-142 |