- Transcript 'KH2012:KH.C9.317.v2....' >
- Transcript 'Cisavi.CG.ENS81.R98....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R98.284679-309909.03584.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
R98 [290,047 / 309,888]
Amino acid sequence
Length: 1,057
>Cisavi.CG.ENS81.R98.284679-309909.03584.p
LSERELKQYEGRYQCFASNDLGTAMTSAITLKAAASPYQRPENKEINVRTGASITVPCNY
SSSNDRVITWTFQPATVTYNERIAESADGSLVFANVLGSDNGLIFYCIVKDLATRKSTDG
PHYTLNVDNTVPLPDRPPTITSPVLTTEPRIVLRDDTLRMKCIATGKPVPSVRWEKLNGN
SVVSWPNGRFRTEDFGRTAVISNASYGDSADYRCTATNALGEATRISKVLVHARPFFSVP
ENAPHDVIKTPGSNVTIRCQAEGIPAPEVEWRVNGVPIAETSPMDNRVIHPTKIRISNLK
VSDSAVYQCIASNMHNSIIKQAYVNVLISMPLPVSSEDVEYVQVLGKTVEMKCNVFGSPS
PAISWQKDGNKITENERFLIRKSKYLRISEVTFDDAGAYTCVATNEYGNATLSTSLTVFR
RTKIQPAAQYRYFVRRGESVTMSVKIDIDDGVVQGPVQWFKSDVLIGRGINYDVNNAAFT
DSGSYKVMVNTSLDHAAVHLTLVVQVSRNAPLSIDIPLPPLDFYVSPKSGGSPLDVTFTW
QPAEDNYSPIQEYKIEFEKDNYRPGKWFPLVDSIPGDRTSFDVTLAAGLRYKFRLWALNG
IGWSEAPSAETGSAPTANPSGVSGKGNTPTNMIITWDPVSPVGRNGPEFGYQITYCTAPD
CTDKEVLYVDGEVESYEVVNLPTYTQYIINIMSYNNIGNASVPQDVLGYSGEDVPLSAPS
DVTVETNEDDATVVIVRWQKVDPDSVRGKVLGYIVSYETPSSNELKERSVGDTDMTGIAG
LKPFTDYSFKVAVYNDYSSGPFSQSYVITTPESTPGPPSTMRLRTTTDTGAHIAWGRPQE
ENGDVIGYVIKFVCLNDSTEIGPISVEGTSYVTSQLRPNHMYDVTVAAQTLKGVGETANI
VMSTMAGEAAASAGVVGEVWFIVLMCIIVLLLIIIVIVCLLRRRKGGKYSVAEKEGQLVD
QESQQIKSDEYNDETDDAKKPLKSPPPVNGKSTPPDISSAVPLRTRGDSVAGDSIDAFGD
DDAREFNEDGSFIGQYGAHESGESSAAATPADDNPVI
Nucleotide sequence
Length: 3,171
>Cisavi.CG.ENS81.R98.284679-309909.03584.t
CTGAGCGAACGGGAGCTGAAGCAATACGAAGGAAGATATCAGTGTTTTGCCTCCAATGAT
CTTGGAACCGCAATGACAAGCGCAATCACCTTGAAAGCGGCAGCATCGCCCTACCAGCGA
CCAGAAAACAAGGAAATCAATGTCCGTACCGGAGCTTCGATCACAGTACCCTGCAATTAC
AGCAGTTCGAATGACCGAGTGATCACGTGGACGTTCCAACCAGCCACTGTGACGTATAAT
GAAAGAATTGCAGAGTCGGCGGACGGGAGTTTGGTATTCGCCAATGTATTGGGTTCGGAC
AACGGACTGATCTTCTATTGTATCGTGAAAGACCTGGCGACCAGAAAATCTACAGATGGA
CCGCATTATACACTAAATGTGGATAATACTGTTCCACTGCCGGACCGCCCACCAACTATT
ACGTCACCCGTCCTTACTACGGAACCACGAATTGTGCTCAGGGACGACACCTTACGGATG
AAATGTATTGCTACGGGAAAACCGGTACCGAGTGTACGATGGGAGAAATTAAATGGAAAT
TCGGTCGTTTCGTGGCCGAACGGTCGATTTCGAACTGAAGATTTCGGACGAACAGCTGTC
ATTAGCAACGCGAGTTATGGGGATAGCGCCGATTACAGGTGCACAGCTACGAATGCGTTG
GGGGAGGCGACGCGGATATCGAAGGTTCTGGTGCACGCTCGACCATTCTTCTCTGTCCCC
GAAAATGCGCCTCATGACGTCATAAAGACACCTGGTAGTAACGTCACAATACGATGTCAA
GCGGAGGGGATTCCCGCGCCGGAAGTCGAGTGGAGGGTGAACGGGGTTCCGATCGCAGAA
ACTTCCCCGATGGATAACAGAGTGATCCATCCAACTAAAATTCGAATCAGCAATCTGAAG
GTGTCTGACTCGGCCGTGTACCAATGCATCGCTAGCAACATGCATAACTCCATTATTAAA
CAAGCATATGTGAATGTGCTCATTTCTATGCCTTTGCCTGTATCGTCGGAAGACGTGGAA
TACGTGCAAGTGTTGGGGAAAACTGTGGAGATGAAATGTAATGTGTTTGGGTCGCCCTCT
CCCGCCATCTCGTGGCAGAAAGATGGAAACAAAATTACAGAAAACGAAAGGTTTCTTATA
CGGAAAAGTAAATATCTTCGCATCAGTGAAGTAACATTCGACGATGCTGGAGCCTACACT
TGCGTAGCGACAAATGAATACGGGAACGCAACACTCAGCACCTCACTTACAGTGTTCCGT
CGTACGAAGATACAACCAGCTGCCCAATACCGCTATTTCGTCAGGCGGGGAGAATCAGTC
ACTATGTCTGTTAAGATTGACATTGATGACGGTGTGGTACAAGGACCAGTTCAATGGTTC
AAATCCGATGTTCTTATTGGACGAGGAATCAATTATGACGTCAACAATGCGGCATTCACG
GATAGCGGAAGCTACAAGGTCATGGTTAACACCAGTCTTGACCACGCGGCTGTGCACTTG
ACTCTGGTTGTTCAAGTATCACGAAATGCACCACTTTCCATAGATATCCCATTACCTCCG
CTGGATTTCTATGTTTCTCCCAAATCGGGGGGATCCCCCCTGGATGTAACGTTCACATGG
CAACCAGCTGAAGACAATTACTCCCCGATACAAGAATACAAGATAGAATTTGAGAAAGAC
AACTATCGACCGGGGAAGTGGTTTCCATTGGTCGATTCGATACCTGGCGACCGAACCTCT
TTCGATGTAACCTTGGCAGCTGGGTTGCGATATAAATTCCGCTTGTGGGCGCTAAACGGC
ATTGGGTGGAGCGAGGCGCCCAGTGCTGAGACAGGCTCCGCTCCAACAGCAAACCCAAGT
GGGGTGTCGGGCAAGGGGAATACCCCAACCAATATGATCATCACGTGGGACCCGGTGAGC
CCAGTGGGGCGTAACGGACCGGAATTCGGGTACCAGATTACATACTGCACCGCTCCCGAC
TGTACCGACAAAGAAGTTCTTTATGTGGACGGGGAAGTCGAATCTTATGAAGTAGTCAAC
CTTCCAACATACACCCAATACATCATTAACATTATGAGCTACAATAATATCGGTAACGCT
TCCGTACCGCAAGACGTACTGGGATACTCTGGCGAAGACGTTCCATTGTCTGCTCCAAGT
GATGTCACAGTTGAAACAAACGAAGATGACGCAACAGTGGTGATTGTGAGGTGGCAAAAA
GTTGACCCAGATTCAGTAAGAGGAAAAGTGCTGGGTTACATCGTGTCCTACGAGACACCT
TCAAGCAATGAACTGAAAGAAAGAAGTGTGGGCGACACCGATATGACAGGAATCGCTGGA
CTCAAACCTTTCACCGATTACTCGTTTAAAGTGGCCGTGTACAACGACTATTCCAGCGGA
CCATTCTCCCAATCCTACGTCATAACCACCCCTGAAAGCACCCCCGGCCCCCCATCTACT
ATGAGACTCCGTACAACAACCGATACTGGGGCACACATTGCATGGGGACGCCCCCAAGAA
GAGAATGGTGATGTCATCGGCTATGTGATCAAATTCGTATGCTTGAACGATTCAACTGAA
ATTGGACCAATCAGCGTCGAAGGTACATCTTACGTCACCTCTCAGTTGCGTCCGAATCAT
ATGTATGACGTCACAGTGGCCGCGCAAACTTTAAAGGGGGTCGGTGAAACAGCAAACATT
GTGATGTCAACAATGGCGGGAGAAGCGGCTGCGAGCGCTGGGGTTGTCGGCGAAGTTTGG
TTCATCGTGCTAATGTGCATCATTGTCCTGCTGCTGATTATCATCGTCATAGTGTGCCTT
CTTCGTCGACGGAAAGGCGGAAAGTATTCAGTTGCAGAGAAAGAAGGACAGCTCGTGGAT
CAGGAATCCCAGCAGATTAAATCCGACGAATACAACGACGAAACAGACGACGCGAAGAAG
CCATTGAAGAGTCCGCCGCCGGTGAACGGAAAATCCACTCCTCCCGACATATCTTCCGCC
GTTCCGCTGCGCACGCGTGGGGACAGTGTAGCCGGCGATTCCATCGACGCGTTCGGTGAC
GACGACGCGCGAGAATTCAACGAGGATGGTTCGTTCATCGGCCAGTACGGGGCGCACGAG
AGCGGGGAAAGCAGCGCCGCAGCGACACCTGCCGACGACAATCCGGTGATA
| Gene3D |
Ig-like_fold (IPR013783) - T[36-132] 1.1E-9 - T[134-240] 3.5E-15 - T[241-327] 8.3E-19 - T[334-419] 6.2E-21 - T[514-616] 3.7E-13 - T[617-713] 1.6E-17 - T[714-816] 3.3E-19 - T[817-916] 5.6E-15 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[41-128] 7.722 - T[138-227] 10.499 - T[235-325] 12.423 - T[331-417] 13.639 |
| SMART |
Ig_sub (IPR003599) - T[43-128] 0.012 - T[147-232] 7.2E-6 - T[244-327] 3.6E-11 - T[338-419] 3.7E-11 - T[429-505] 2.4 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[43-113] 2.12E-8 - T[147-237] 3.1E-16 - T[233-326] 2.09E-17 - T[342-420] 8.22E-22 - T[432-511] 4.96E-5 |
| SMART |
Ig_sub2 (IPR003598) - T[49-114] 2.0 - T[153-221] 3.3E-11 - T[250-316] 4.7E-11 - T[344-408] 4.9E-18 |
| Pfam |
Ig_I-set (IPR013098) - T[345-418] 2.9E-20 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[515-706] 6.87E-21 - T[717-906] 1.2E-33 |
| SMART |
FN3_dom (IPR003961) - T[517-604] 2.8E-4 - T[616-701] 7.1E-5 - T[716-800] 1.9E-7 - T[815-895] 3.2E-9 |
| CDD |
FN3_dom (IPR003961) - T[517-611] 1.60583E-11 - T[618-698] 7.33879E-10 - T[717-810] 5.77035E-12 - T[815-901] 5.88394E-12 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[519-617] 15.053 - T[618-717] 16.197 - T[718-813] 18.643 - T[817-909] 15.645 |
| Pfam |
FN3_dom (IPR003961) - T[618-698] 9.1E-8 - T[717-803] 5.7E-11 - T[817-896] 5.6E-8 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[942-1039] 1.5E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 30.664 % | 407 | 4.31E-123 |
| NFASC_HUMAN | 30.753 % | 400 | 2.35E-120 |
| NCHL1_HUMAN | 28.883 % | 451 | 6.1E-140 |