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- Transcript 'Cisavi.CG.ENS81.R98....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R98.284679-309909.03585.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
R98 [290,062 / 309,894]
Amino acid sequence
Length: 1,138
>Cisavi.CG.ENS81.R98.284679-309909.03585.p
LKQYEGRYQCFASNDLGTAMTSAITLKAAASPYQRPENKEINVRTGASITVPCNYSSSND
RVITWTFQPATVTYNERIAESADGSLVFANVLGSDNGLIFYCIVKDLATRKSTDGPHYTL
NVDNTVPLPDRPPTITSPVLTTEPRIVLRDDTLRMKCIATGKPVPSVRWEKLNGNSVVSW
PNGRFRTEDFGRTAVISNASYGDSADYRCTATNALGEATRISKVLVHARPFFSVPENAPH
DVIKTPGSNVTIRCQAEGIPAPEVEWRVNGVPIAETSPMDNRVIHPTKIRISNLKVSDSA
VYQCIASNMHNSIIKQAYVNVLISMPLPVSSEDVEYVQVLGKTVEMKCNVFGSPSPAISW
QKDGNKITENERFLIRKSKYLRISEVTFDDAGAYTCVATNEYGNATLSTSLTVFRRTKIQ
PAAQYRYFVRRGESVTMSVKIDIDDGVVQGPVQWFKSDVLIGRGINYDVNNAAFTDSGSY
KVMVNTSLDHAAVHLTLVVQDIPLPPLDFYVSPKSGGSPLDVTFTWQPAEDNYSPIQEYK
IEFEKDNYRPGKWFPLVDSIPGDRTSFDVTLAAGLRYKFRLWALNGIGWSEAPSAETGSA
PTANPSGVSGKGNTPTNMIITWDPVSPVGRNGPEFGYQITYCTAPDCTDKEVLYVDGEVE
SYEVVNLPTYTQYIINIMSYNNIGNASVPQDVLGYSGEDVPLSAPSDVTVETNEDDATVV
IVRWQKVDPDSVRGKVLGYIVSYETPSSNELKERSVGDTDMTGIAGLKPFTDYSFKVAVY
NDYSSGPFSQSYVITTPESTPGPPSTMRLRTTTDTGAHIAWGRPQEENGDVIGYVIKFVC
LNDSTEIGPISVEGTSYVTSQLRPNHMYDVTVAAQTLKGVGETANIVMSTMAGEAPVAAR
FNVTAGMTTANVTWYQVGGIPATKYFVEYKKSNEWKMSHGSYSTEKTGEGVPLAGLDPGT
SYLVRIVSVNAYDQTVSRAIMFKTAGAAAASAGVVGEVWFIVLMCIIVLLLIIIVIVCLL
RRRKGGKYSVAEKEGQLVDQESQQIKSDEYNDETDDAKKPLKSPPPVNGKSTPPDISSAV
PLRTRGDSVAGDSIDAFGDDDAREFNEDGSFIGQYGAHESGESSAAATPADDNPVINR
Nucleotide sequence
Length: 3,414
>Cisavi.CG.ENS81.R98.284679-309909.03585.t
CTGAAGCAATACGAAGGAAGATATCAGTGTTTTGCCTCCAATGATCTTGGAACCGCAATG
ACAAGCGCAATCACCTTGAAAGCGGCAGCATCGCCCTACCAGCGACCAGAAAACAAGGAA
ATCAATGTCCGTACCGGAGCTTCGATCACAGTACCCTGCAATTACAGCAGTTCGAATGAC
CGAGTGATCACGTGGACGTTCCAACCAGCCACTGTGACGTATAATGAAAGAATTGCAGAG
TCGGCGGACGGGAGTTTGGTATTCGCCAATGTATTGGGTTCGGACAACGGACTGATCTTC
TATTGTATCGTGAAAGACCTGGCGACCAGAAAATCTACAGATGGACCGCATTATACACTA
AATGTGGATAATACTGTTCCACTGCCGGACCGCCCACCAACTATTACGTCACCCGTCCTT
ACTACGGAACCACGAATTGTGCTCAGGGACGACACCTTACGGATGAAATGTATTGCTACG
GGAAAACCGGTACCGAGTGTACGATGGGAGAAATTAAATGGAAATTCGGTCGTTTCGTGG
CCGAACGGTCGATTTCGAACTGAAGATTTCGGACGAACAGCTGTCATTAGCAACGCGAGT
TATGGGGATAGCGCCGATTACAGGTGCACAGCTACGAATGCGTTGGGGGAGGCGACGCGG
ATATCGAAGGTTCTGGTGCACGCTCGACCATTCTTCTCTGTCCCCGAAAATGCGCCTCAT
GACGTCATAAAGACACCTGGTAGTAACGTCACAATACGATGTCAAGCGGAGGGGATTCCC
GCGCCGGAAGTCGAGTGGAGGGTGAACGGGGTTCCGATCGCAGAAACTTCCCCGATGGAT
AACAGAGTGATCCATCCAACTAAAATTCGAATCAGCAATCTGAAGGTGTCTGACTCGGCC
GTGTACCAATGCATCGCTAGCAACATGCATAACTCCATTATTAAACAAGCATATGTGAAT
GTGCTCATTTCTATGCCTTTGCCTGTATCGTCGGAAGACGTGGAATACGTGCAAGTGTTG
GGGAAAACTGTGGAGATGAAATGTAATGTGTTTGGGTCGCCCTCTCCCGCCATCTCGTGG
CAGAAAGATGGAAACAAAATTACAGAAAACGAAAGGTTTCTTATACGGAAAAGTAAATAT
CTTCGCATCAGTGAAGTAACATTCGACGATGCTGGAGCCTACACTTGCGTAGCGACAAAT
GAATACGGGAACGCAACACTCAGCACCTCACTTACAGTGTTCCGTCGTACGAAGATACAA
CCAGCTGCCCAATACCGCTATTTCGTCAGGCGGGGAGAATCAGTCACTATGTCTGTTAAG
ATTGACATTGATGACGGTGTGGTACAAGGACCAGTTCAATGGTTCAAATCCGATGTTCTT
ATTGGACGAGGAATCAATTATGACGTCAACAATGCGGCATTCACGGATAGCGGAAGCTAC
AAGGTCATGGTTAACACCAGTCTTGACCACGCGGCTGTGCACTTGACTCTGGTTGTTCAA
GATATCCCATTACCTCCGCTGGATTTCTATGTTTCTCCCAAATCGGGGGGATCCCCCCTG
GATGTAACGTTCACATGGCAACCAGCTGAAGACAATTACTCCCCGATACAAGAATACAAG
ATAGAATTTGAGAAAGACAACTATCGACCGGGGAAGTGGTTTCCATTGGTCGATTCGATA
CCTGGCGACCGAACCTCTTTCGATGTAACCTTGGCAGCTGGGTTGCGATATAAATTCCGC
TTGTGGGCGCTAAACGGCATTGGGTGGAGCGAGGCGCCCAGTGCTGAGACAGGCTCCGCT
CCAACAGCAAACCCAAGTGGGGTGTCGGGCAAGGGGAATACCCCAACCAATATGATCATC
ACGTGGGACCCGGTGAGCCCAGTGGGGCGTAACGGACCGGAATTCGGGTACCAGATTACA
TACTGCACCGCTCCCGACTGTACCGACAAAGAAGTTCTTTATGTGGACGGGGAAGTCGAA
TCTTATGAAGTAGTCAACCTTCCAACATACACCCAATACATCATTAACATTATGAGCTAC
AATAATATCGGTAACGCTTCCGTACCGCAAGACGTACTGGGATACTCTGGCGAAGACGTT
CCATTGTCTGCTCCAAGTGATGTCACAGTTGAAACAAACGAAGATGACGCAACAGTGGTG
ATTGTGAGGTGGCAAAAAGTTGACCCAGATTCAGTAAGAGGAAAAGTGCTGGGTTACATC
GTGTCCTACGAGACACCTTCAAGCAATGAACTGAAAGAAAGAAGTGTGGGCGACACCGAT
ATGACAGGAATCGCTGGACTCAAACCTTTCACCGATTACTCGTTTAAAGTGGCCGTGTAC
AACGACTATTCCAGCGGACCATTCTCCCAATCCTACGTCATAACCACCCCTGAAAGCACC
CCCGGCCCCCCATCTACTATGAGACTCCGTACAACAACCGATACTGGGGCACACATTGCA
TGGGGACGCCCCCAAGAAGAGAATGGTGATGTCATCGGCTATGTGATCAAATTCGTATGC
TTGAACGATTCAACTGAAATTGGACCAATCAGCGTCGAAGGTACATCTTACGTCACCTCT
CAGTTGCGTCCGAATCATATGTATGACGTCACAGTGGCCGCGCAAACTTTAAAGGGGGTC
GGTGAAACAGCAAACATTGTGATGTCAACAATGGCGGGAGAAGCCCCGGTTGCCGCAAGA
TTCAATGTAACTGCTGGTATGACAACTGCAAACGTCACGTGGTATCAGGTGGGGGGAATT
CCCGCAACCAAGTATTTCGTCGAATACAAGAAATCAAACGAGTGGAAAATGAGCCATGGT
TCTTATTCTACTGAGAAAACCGGCGAGGGCGTGCCGCTGGCTGGTCTCGATCCCGGTACC
TCCTACTTAGTGAGAATAGTGTCGGTGAACGCGTATGACCAGACGGTGTCACGAGCTATC
ATGTTCAAAACGGCCGGCGCAGCGGCTGCGAGCGCTGGGGTTGTCGGCGAAGTTTGGTTC
ATCGTGCTAATGTGCATCATTGTCCTGCTGCTGATTATCATCGTCATAGTGTGCCTTCTT
CGTCGACGGAAAGGCGGAAAGTATTCAGTTGCAGAGAAAGAAGGACAGCTCGTGGATCAG
GAATCCCAGCAGATTAAATCCGACGAATACAACGACGAAACAGACGACGCGAAGAAGCCA
TTGAAGAGTCCGCCGCCGGTGAACGGAAAATCCACTCCTCCCGACATATCTTCCGCCGTT
CCGCTGCGCACGCGTGGGGACAGTGTAGCCGGCGATTCCATCGACGCGTTCGGTGACGAC
GACGCGCGAGAATTCAACGAGGATGGTTCGTTCATCGGCCAGTACGGGGCGCACGAGAGC
GGGGAAAGCAGCGCCGCAGCGACACCTGCCGACGACAATCCGGTGATAAACCGA
| Gene3D |
Ig-like_fold (IPR013783) - T[30-127] 1.2E-9 - T[128-235] 3.7E-15 - T[236-322] 9.1E-19 - T[329-414] 6.8E-21 - T[490-603] 4.0E-17 - T[604-692] 1.2E-11 - T[693-800] 6.9E-21 - T[801-898] 3.9E-15 - T[899-994] 9.4E-8 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[36-123] 7.722 - T[133-222] 10.499 - T[230-320] 12.423 - T[326-412] 13.639 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[38-108] 2.41E-8 - T[142-232] 3.53E-16 - T[228-321] 2.23E-17 - T[337-415] 9.06E-22 - T[427-528] 3.91E-6 |
| SMART |
Ig_sub (IPR003599) - T[38-123] 0.012 - T[142-227] 7.2E-6 - T[239-322] 3.6E-11 - T[333-414] 3.7E-11 - T[424-500] 2.4 |
| SMART |
Ig_sub2 (IPR003598) - T[44-109] 2.0 - T[148-216] 3.3E-11 - T[245-311] 4.7E-11 - T[339-403] 4.9E-18 |
| Pfam |
Ig_I-set (IPR013098) - T[340-413] 3.2E-20 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[501-692] 2.75E-20 - T[703-896] 4.68E-34 - T[906-987] 4.17E-9 |
| SMART |
FN3_dom (IPR003961) - T[503-590] 2.8E-4 - T[602-687] 7.1E-5 - T[702-786] 1.9E-7 - T[801-881] 3.2E-9 - T[896-977] 0.012 |
| CDD |
FN3_dom (IPR003961) - T[503-597] 2.23398E-11 - T[604-684] 9.35275E-10 - T[703-796] 7.4978E-12 - T[801-887] 7.57124E-12 - T[908-972] 2.79783E-4 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[505-603] 15.053 - T[604-703] 16.197 - T[704-799] 18.643 - T[803-895] 15.645 - T[896-987] 10.241 |
| Pfam |
FN3_dom (IPR003961) - T[604-684] 1.0E-7 - T[703-789] 6.3E-11 - T[803-882] 6.2E-8 - T[906-971] 9.5E-7 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[1021-1118] 1.6E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 31.506 % | 496 | 4.95E-155 |
| NCHL1_HUMAN | 29.582 % | 471 | 2.1E-146 |
| L1CAM_HUMAN | 29.589 % | 458 | 2.49E-141 |