- Transcript 'Cisavi.CG.ENS81.R98....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R98.284679-309909.03589.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
R98 [292,884 / 309,864]
Amino acid sequence
Length: 977
>Cisavi.CG.ENS81.R98.284679-309909.03589.p
LPDRPPTITSPVLTTEPRIVLRDDTLRMKCIATGKPVPSVRWEKLNGNSVVSWPNGRFRT
EDFGRTAVISNASYGDSADYRCTATNALGEATRISKVLVHARPFFSVPENAPHDVIKTPG
SNVTIRCQAEGIPAPEVEWRVNGVPIAETSPMDNRVIHPTKIRISNLKVSDSAVYQCIAS
NMHNSIIKQAYVNVLISMPLPVSSEDVEYVQVLGKTVEMKCNVFGSPSPAISWQKDGNKI
TENESKYLRISEVTFDDAGAYTCVATNEYGNATLSTSLTVFRRTKIQPAAQYRYFVRRGE
SVTMSVKIDIDDGVVQGPVQWFKSDVLIGRGINYDVNNAAFTDSGSYKVMVNTSLDHAAV
HLTLVVQDIPLPPLDFYVSPKSGGSPLDVTFTWQPAEDNYSPIQEYKIEFEKDNYRPGKW
FPLVDSIPGDRTSFDVTLAAGLRYKFRLWALNGIGWSEAPSAETGSAPTANPSGVSGKGN
TPTNMIITWDPVSPVGRNGPEFGYQITYCTAPDCTDKEVLYVDGEVESYEVVNLPTYTQY
IINIMSYNNIGNASVPQDVLGYSGEDVPLSAPSDVTVETNEDDATVVIVRWQKVDPDSVR
GKVLGYIVSYETPSSNELKERSVGDTDMTGIAGLKPFTDYSFKVAVYNDYSSGPFSQSYV
ITTPESTPGPPSTMRLRTTTDTGAHIAWGRPQEENGDVIGYVIKFVCLNDSTEIGPISVE
GTSYVTSQLRPNHMYDVTVAAQTLKGVGETANIVMSTMAGEAPVAARFNVTAGMTTANVT
WYQVGGIPATKYFVEYKKSTEDEWKMSHGSYSTEKTGEGVPLAGLDPGTSYLVRIVSVNA
YDQTVSRAIMFKTAGAGELIAGVVGEVWFIVLMCIIVLLLIIIVIVCLLRRRKGGKYSGF
DETDDAKKPLKSPPPVNGKSTPPDISSAVPLRTRGDSVAGDSIDAFGDDDAREFNEDGSF
IGQYGAHESGESSAAAT
Nucleotide sequence
Length: 2,931
>Cisavi.CG.ENS81.R98.284679-309909.03589.t
CTGCCGGACCGCCCACCAACTATTACGTCACCCGTCCTTACTACGGAACCACGAATTGTG
CTCAGGGACGACACCTTACGGATGAAATGTATTGCTACGGGAAAACCGGTACCGAGTGTA
CGATGGGAGAAATTAAATGGAAATTCGGTCGTTTCGTGGCCGAACGGTCGATTTCGAACT
GAAGATTTCGGACGAACAGCTGTCATTAGCAACGCGAGTTATGGGGATAGCGCCGATTAC
AGGTGCACAGCTACGAATGCGTTGGGGGAGGCGACGCGGATATCGAAGGTTCTGGTGCAC
GCTCGACCATTCTTCTCTGTCCCCGAAAATGCGCCTCATGACGTCATAAAGACACCTGGT
AGTAACGTCACAATACGATGTCAAGCGGAGGGGATTCCCGCGCCGGAAGTCGAGTGGAGG
GTGAACGGGGTTCCGATCGCAGAAACTTCCCCGATGGATAACAGAGTGATCCATCCAACT
AAAATTCGAATCAGCAATCTGAAGGTGTCTGACTCGGCCGTGTACCAATGCATCGCTAGC
AACATGCATAACTCCATTATTAAACAAGCATATGTGAATGTGCTCATTTCTATGCCTTTG
CCTGTATCGTCGGAAGACGTGGAATACGTGCAAGTGTTGGGGAAAACTGTGGAGATGAAA
TGTAATGTGTTTGGGTCGCCCTCTCCCGCCATCTCGTGGCAGAAAGATGGAAACAAAATT
ACAGAAAACGAAAGTAAATATCTTCGCATCAGTGAAGTAACATTCGACGATGCTGGAGCC
TACACTTGCGTAGCGACAAATGAATACGGGAACGCAACACTCAGCACCTCACTTACAGTG
TTCCGTCGTACGAAGATACAACCAGCTGCCCAATACCGCTATTTCGTCAGGCGGGGAGAA
TCAGTCACTATGTCTGTTAAGATTGACATTGATGACGGTGTGGTACAAGGACCAGTTCAA
TGGTTCAAATCCGATGTTCTTATTGGACGAGGAATCAATTATGACGTCAACAATGCGGCA
TTCACGGATAGCGGAAGCTACAAGGTCATGGTTAACACCAGTCTTGACCACGCGGCTGTG
CACTTGACTCTGGTTGTTCAAGATATCCCATTACCTCCGCTGGATTTCTATGTTTCTCCC
AAATCGGGGGGATCCCCCCTGGATGTAACGTTCACATGGCAACCAGCTGAAGACAATTAC
TCCCCGATACAAGAATACAAGATAGAATTTGAGAAAGACAACTATCGACCGGGGAAGTGG
TTTCCATTGGTCGATTCGATACCTGGCGACCGAACCTCTTTCGATGTAACCTTGGCAGCT
GGGTTGCGATATAAATTCCGCTTGTGGGCGCTAAACGGCATTGGGTGGAGCGAGGCGCCC
AGTGCTGAGACAGGCTCCGCTCCAACAGCAAACCCAAGTGGGGTGTCGGGCAAGGGGAAT
ACCCCAACCAATATGATCATCACGTGGGACCCGGTGAGCCCAGTGGGGCGTAACGGACCG
GAATTCGGGTACCAGATTACATACTGCACCGCTCCCGACTGTACCGACAAAGAAGTTCTT
TATGTGGACGGGGAAGTCGAATCTTATGAAGTAGTCAACCTTCCAACATACACCCAATAC
ATCATTAACATTATGAGCTACAATAATATCGGTAACGCTTCCGTACCGCAAGACGTACTG
GGATACTCTGGCGAAGACGTTCCATTGTCTGCTCCAAGTGATGTCACAGTTGAAACAAAC
GAAGATGACGCAACAGTGGTGATTGTGAGGTGGCAAAAAGTTGACCCAGATTCAGTAAGA
GGAAAAGTGCTGGGTTACATCGTGTCCTACGAGACACCTTCAAGCAATGAACTGAAAGAA
AGAAGTGTGGGCGACACCGATATGACAGGAATCGCTGGACTCAAACCTTTCACCGATTAC
TCGTTTAAAGTGGCCGTGTACAACGACTATTCCAGCGGACCATTCTCCCAATCCTACGTC
ATAACCACCCCTGAAAGCACCCCCGGCCCCCCATCTACTATGAGACTCCGTACAACAACC
GATACTGGGGCACACATTGCATGGGGACGCCCCCAAGAAGAGAATGGTGATGTCATCGGC
TATGTGATCAAATTCGTATGCTTGAACGATTCAACTGAAATTGGACCAATCAGCGTCGAA
GGTACATCTTACGTCACCTCTCAGTTGCGTCCGAATCATATGTATGACGTCACAGTGGCC
GCGCAAACTTTAAAGGGGGTCGGTGAAACAGCAAACATTGTGATGTCAACAATGGCGGGA
GAAGCCCCGGTTGCCGCAAGATTCAATGTAACTGCTGGTATGACAACTGCAAACGTCACG
TGGTATCAGGTGGGGGGAATTCCCGCAACCAAGTATTTCGTCGAATACAAGAAATCAACT
GAAGACGAGTGGAAAATGAGCCATGGTTCTTATTCTACTGAGAAAACCGGCGAGGGCGTG
CCGCTGGCTGGTCTCGATCCCGGTACCTCCTACTTAGTGAGAATAGTGTCGGTGAACGCG
TATGACCAGACGGTGTCACGAGCTATCATGTTCAAAACGGCCGGCGCAGGTGAATTGATC
GCTGGGGTTGTCGGCGAAGTTTGGTTCATCGTGCTAATGTGCATCATTGTCCTGCTGCTG
ATTATCATCGTCATAGTGTGCCTTCTTCGTCGACGGAAAGGCGGAAAGTATTCAGGTTTC
GACGAAACAGACGACGCGAAGAAGCCATTGAAGAGTCCGCCGCCGGTGAACGGAAAATCC
ACTCCTCCCGACATATCTTCCGCCGTTCCGCTGCGCACGCGTGGGGACAGTGTAGCCGGC
GATTCCATCGACGCGTTCGGTGACGACGACGCGCGAGAATTCAACGAGGATGGTTCGTTC
ATCGGCCAGTACGGGGCGCACGAGAGCGGGGAAAGCAGCGCCGCAGCGACA
| Gene3D |
Ig-like_fold (IPR013783) - T[3-106] 3.6E-15 - T[108-195] 7.5E-19 - T[203-280] 3.3E-19 - T[357-469] 3.2E-17 - T[470-566] 1.4E-17 - T[567-669] 3.3E-19 - T[670-765] 3.1E-15 - T[766-859] 6.5E-9 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[6-95] 10.499 - T[103-193] 12.423 - T[199-279] 13.257 |
| SMART |
Ig_sub (IPR003599) - T[15-100] 7.2E-6 - T[112-195] 3.6E-11 - T[206-281] 2.2E-11 - T[291-367] 2.4 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[15-105] 3.1E-16 - T[101-194] 1.83E-17 - T[208-274] 1.16E-18 - T[294-395] 3.27E-6 |
| SMART |
Ig_sub2 (IPR003598) - T[21-89] 3.3E-11 - T[118-184] 4.7E-11 - T[212-270] 2.8E-18 |
| Pfam |
Ig_I-set (IPR013098) - T[213-280] 2.0E-16 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[368-559] 1.72E-20 - T[570-763] 3.71E-34 - T[773-855] 9.95E-10 |
| SMART |
FN3_dom (IPR003961) - T[370-457] 2.8E-4 - T[469-554] 7.1E-5 - T[569-653] 1.9E-7 - T[668-748] 3.2E-9 - T[763-846] 0.0081 |
| CDD |
FN3_dom (IPR003961) - T[370-464] 2.36215E-11 - T[471-551] 9.79394E-10 - T[570-663] 8.00552E-12 - T[668-754] 7.85097E-12 - T[775-841] 4.0329E-6 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[372-470] 15.053 - T[471-570] 16.197 - T[571-666] 18.643 - T[670-762] 15.645 - T[763-856] 10.462 |
| Pfam |
FN3_dom (IPR003961) - T[471-551] 8.3E-8 - T[570-656] 5.2E-11 - T[670-749] 5.1E-8 - T[773-840] 4.6E-7 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[890-967] 1.9E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 31.339 % | 434 | 1.61E-133 |
| NCHL1_HUMAN | 29.505 % | 397 | 1.02E-120 |
| L1CAM_HUMAN | 28.641 % | 386 | 2.87E-116 |