- Transcript 'Boleac.CG.SB_v3.S278...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S278.g06545.01.t
Possible name(s)
SOX13; SOX5; SOX6
Gene model
Location
S278 [8,719 / 14,035]
Amino acid sequence
Length: 328
>Boleac.CG.SB_v3.S278.g06545.01.p
MLVHYGFGVLLRRERPLNLSQRLEEEKDSSPVLLSRSNRSPDRHFDGMTAQDLLRAHGFK
SMESQNKVHPLLPGASSKAVSLLHNMFPGAANPTDIHNYLKSESCKRENDSYSSQGLRSS
PGRQSPGKQYGMGDFSSTETRAYREKRDGQHIKRPMNAFMVWAKDERRKILQAFPDMHNS
NISKILGAKWKEMSNVEKQPYYEEQARLSKLHLEKYPDYKYKPRPKRTCIVDGKKLRISE
YKALMRMRRADMRTGVFPASNQSPPSNSYPSPPTMVSSVYTYPTPNPKALGSMSMSSLNH
LASTVGSYARANSDDEGRIDRDHSSPPS
Nucleotide sequence
Length: 3,517
>Boleac.CG.SB_v3.S278.g06545.01.t
ATGCTAGTCCATTACGGGTTTGGAGTACTACTGCGTAGGGAGAGGCCACTGAATCTTTCT
CAAAGACTGGAAGAGGAAAAAGACTCATCGCCGGTACTGCTATCGCGAAGCAACCGATCT
CCCGATCGTCATTTCGATGGCATGACAGCACAAGACCTTCTCAGAGCTCATGGATTTAAA
AGTATGGAATCTCAAAACAAAGTACACCCACTGTTGCCAGGAGCGTCTAGCAAGGCGGTC
AGCTTGCTTCATAACATGTTTCCAGGAGCCGCGAATCCAACAGACATTCACAACTACCTC
AAATCCGAATCATGTAAACGGGAGAACGATTCATATTCGTCTCAAGGACTGAGATCGTCA
CCAGGAAGGCAGAGTCCCGGAAAGCAGTATGGTATGGGAGATTTCTCTTCAACAGAAACC
CGGGCGTATCGTGAAAAGCGAGACGGACAACACATCAAAAGGCCAATGAACGCCTTCATG
GTTTGGGCAAAAGATGAAAGGAGAAAAATATTGCAAGCATTCCCTGATATGCACAACTCA
AACATCAGTAAAATATTAGGAGCGAAGTGGAAGGAGATGTCGAATGTTGAGAAGCAGCCT
TACTACGAAGAGCAAGCCCGACTCAGTAAATTGCATTTGGAGAAATACCCCGATTACAAA
TACAAGCCGCGACCGAAGAGAACGTGCATTGTGGACGGCAAGAAATTGAGAATTTCCGAG
TACAAGGCTTTGATGAGGATGAGGCGTGCTGACATGAGAACTGGTGTGTTCCCAGCAAGC
AACCAATCGCCACCTTCCAATTCCTATCCGTCGCCACCTACTATGGTGTCATCCGTATAC
ACTTACCCAACGCCTAACCCAAAGGCGTTGGGGTCAATGTCAATGAGCAGTTTGAATCAT
CTCGCGTCTACGGTCGGATCTTACGCTCGTGCCAACTCTGATGACGAAGGACGAATCGAC
CGGGATCACTCCAGCCCGCCGTCATGAAAATCCTAATTTCATCGCGCACATAAGTTCCAC
GGTGCAAAATTACTCTCAGTGACGTAACAAGAAGAGATACAACGGCGACGACGAAGTCTC
ATGCATCACTGCCTTACAAATTTGCTGCGGATCCCGGAAAGCGTCACATTCGGAAAACGG
AGATTAATTTCACTATTTGGAAAGTCGCTTCTAGATGATGACACGTCACAANCAAAACTT
TGTAACGTCACAAACCGAACTTATTTCTCAAATCAGACTCAGAAAATATTGGAGCGCGAA
GCCTTTTAGACTGAGCAAAATGTGTATTACGTAGGTGCTTTCATGAAATTTCTAGTTGCA
TTTTTTCTTGCGTTTCTATCGTCCACGTCAATCGTACTATACTATAGGATATTTTTTTGA
ATAATGCTGCAAGTAGTATATTTTAGAATGCGTTCGCTGCTGTCTTGCGTCACACCACCA
AGCTTCATACAACAACATCCATTATCTACAAAGTAATAGACTGTTCATAACGCAGCCATT
TTTATTNTTNCCATCCTTCACACAACTTTCGAGTATAAGTCGAGTTCATAAAGAAGGATT
AAAGTAAATCGTCGCTTATCGCTGGTTGCTCAAATGCTCAACCGGCGTTTTATTCAGTGA
TTACCTGCATTTGCATATACGATCTGACTCAACTTACAAATTTTACTTTGCCATTATTTG
CATACATTTCACCACAAAAAATTATCTCATAGGCTGGGCCTCAAAATTGATTTTGCTGAG
CAATATCCCGACATGAGTCGTACAGACTTTCAAATTTCTCTCCCCGCTNTCGTGACGTTC
ATTATCAAAGCAGATTGCTGATCATTCCATTACTTTTGAAACGCCTAATCCTGATGTTAC
GGTCGAATTTGTTCACGGCGAGCGTAGCGAACTTACAATTTTGTCCGCTTCCCGTTGAAT
CGCTTNGCATTTTGACTGCCTGAAATACGCATCCTATCCTTTCGCCATAGCCTACTCATG
AGTCATGTCATTCCGCAGGGAAGGTGGCGGCTTAGCATCAATATTAACAACTTGCGGTTT
GCTGAGTTCGCTATCAATGTATATGGGTTGAAATGTAAAGAACGGCGAGACCTTTTATGT
TCTGTTTCGTCACTATAGTTTCGTTGTTGCGACTATTTAGCAATCAAAATTCTTTCGTCA
ATCGTAAAACCCAGGACTGTATACAGTAAGCCATTATCGTAGTTCCAAAGCTGCTCTTTT
ATCTTGCCTCTAGTGGAAGTATAGCGGTGGTGATTTTCATTGTCTTATTTCCATGTTCTT
CAATCTGCCTGTATTCATTACAAGCCACGTACCGAGCCATATACCCTGATTTAGCGTTGT
TGCGTAGGAGATGGTTTCTCCCAACTCCGCAATCTTTTTAAAATTGTGTTCGTAAATTCA
GCGCTGTGGTGGATCAATTTGTTGTAGGGTTTTGTTTTGAAGTCCCTAGCTTGGAAATGG
CCGGGGGTCGGATTGTGAGGCGTGATTTATAACGCATAACGTCGCCGTCAATGCCGCAGT
ATAGCCCCAGATACGAAAACGGCCTTGGAAACCGCACACCCAGCGTTGACATTGAACACA
GATCGTCTTCATCTATTACAATATTCGTTATACGGCTGGTAACCTGGCAAGGCTTGGTTA
CTCACAAAATTATCCAATGAAGGCCCTGTATTGGGTTAACATCATAGGCCTATTGACCTG
AGTGGCTACATACATTAGTTTAATGTTATTAGAAAGATTTTACCACGTTTCTTCATCGGT
GTAATACTAATACACAAAGACACGCGTCTGTCGCGCTATTCCGCCTTTTTACTAACAGAT
GCATGTAACGACTAGCCGCTAAAGGCGCAAATTAGCTACTTTGTGTTTCCATTATTATTT
TCAAACCCAGACAGAAAAATAGTCTACACAAACACTGTTTTGACAGATATTGTATCTCAT
TAACAACGTTTCTGGCTGCCTACCCTTTTATGAATCATAGTTCACTTCATGCATGAGTGC
TTCTGTAGAAATTTATGTCACGTGATCAAACTATCCATTCGCAAGATATTTCAATCGTTT
CCTTGTTCTTTTTACCGGCTACAATAACAAGCAATTTTTCATGAACCTGTATCGTCACAC
TTGTCCACTTCCGCCTACTTGTCCACTTCCGCCTAGTTGAGAGACCCATTACAAGCCCAA
TTTATGACGTCATCATCAATCCATTTGCCCTCAACGTCGATCTCTCCCGATCCAGTGTCG
CAATTTAAATTGAAAGCTACTACAGTACATCCTCAATAGTGCCATTGGCATGTTCACTCG
ACTACTTCACAACCGGATTTCACACGTCAAGATATCTATGCTTAGATGTGTAGGTAGCCT
CCGTTCTACTTAGTTATTTACTTATTTCGTGTGTTGTTGTCTTCCACGGTTTATCAATTT
TCACACAATTCTTGTACCTTTTTGTCGCCAACCTTTGAGGTTGGGTTTTCAGAGCAACAA
GCAAATAAATCTGAGGGACGTTTTCAACTTCAAAAAA
| PANTHER |
SOX-6 (IPR027153) - T[111-254] 1.4E-78 |
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[140-221] 1.11E-26 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[149-230] 7.0E-29 |
| SMART |
HMG_box_dom (IPR009071) - T[151-221] 9.1E-26 |
| Pfam |
HMG_box_dom (IPR009071) - T[152-220] 5.6E-23 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[152-220] 20.742 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SOX5_HUMAN | 78.4 % | 212 | 7.68E-63 |
| SOX6_HUMAN | 55.665 % | 211 | 2.44E-62 |
| SOX13_HUMAN | 79.825 % | 202 | 4.23E-60 |