- Clone 'AHC0AAA178YP10' >
- Transcript 'Boleac.CG.SB_v3.S289...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S289.g06792.01.t
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
S289 [127,880 / 137,871]
Amino acid sequence
Length: 961
>Boleac.CG.SB_v3.S289.g06792.01.p
MTEESPVGGVVNEAQTKTDAMKRPLENADSNAVTAAKILKVASEGEVIIEMVNDGEMIDG
TEVLTKQEGGEAATEEVVIIQGDVAEEETVMTTDAQAEEFTLDMMTDKQAQVQVVVEQEV
SDEVAMIPEQTEPKAKKAKRSLSNTATVAAPQGVNPAMMSNLLHTAAAVAASQNAAAATV
QVVPGQATGTIQLVPASEVQNTQALMASGIAPQSLSPQTIGVGEDGKPQIIPQPTNQPVF
TYLVTSQGTLISAHSSDGTPLISPAEAEKTPKAKGEDTDGDAAGHGSGVNQLGGMYVNGR
PLPEPIRKRIVDLSHQGVRPCDISRQLRVSHGCVSKILARFYETGSIRPGVIGGSKPKVA
TPPVVTKITDYKRENPTMFAWEIRDRLLSEGICSSDTVPSVSSINRIVRSKTADFIKDNQ
HLTNQANMASPLLGLKEKTHLPTMVHGIQTTENQRESDSLQHYISIEMVPSSGFAQTAGN
LVQSPTSQSIASATQVVSAASLTLPPPPVVPTISASKTVQGLPQQIFANLSQQQQFDLLK
SVTISENIAIPQKDDSNVTEGNVAPEPALQEQTLSTLEIQEQEQSTSTQKSGELASQNVQ
LQITRADGQQSVITVTQQQLQQLAAQGIVLQRSSPEKSTQAAAHSQIVGSSVVSQNSPQE
QSILKTIQDTILVKPEPVETQEMPDGALSQSSSAVSQLLLAAQQQLQQQNKQNTTGTQED
AAQILTAVTIENAQNTSAGGLTSSIALTNSNNSNNTQQQQQILTASPSVLASLQQQLAGL
QQQQIIQPQQNVTSTQQDQAGIVHILSAAAQIQQQTGANTNSNNNNSLQQQLNVAQMLSA
AQQGAALKKATELQPVGTLLSQLRPVSIQNSSTISVVSADSTPSSVATALPPLALPSATT
AASQVSQIGASSTNASRPFNTIYNQAWKMATNGQRVAGEVTVVSESSAKTTSAIVEQDXM
E
Nucleotide sequence
Length: 4,485
>Boleac.CG.SB_v3.S289.g06792.01.t
GTAGGCTATTGTGAAAAATGTGCACTTCACTCGACCTCAGATTTCATGCCAAATTCTAAA
TACCAGTATATTACCATTCATAAAAGCAGAGATATATTTGTTACATGTTATGAAGCAAAT
GTNCTAGAATGACAGAAGAAAGTCCCGTGGGAGGTGTGGTAAATGAAGCGCAAACTAAAA
CAGACGCTATGAAAAGGCCATTGGAAAATGCTGACAGTAATGCAGTAACTGCAGCAAAAA
TATTGAAAGTCGCCAGTGAAGGAGAGGTTATCATTGAAATGGTAAATGACGGCGAAATGA
TCGATGGGACAGAGGTCCTTACAAAGCAAGAAGGTGGAGAAGCAGCTACTGAAGAAGTTG
TGATTATACAAGGAGATGTTGCTGAGGAAGAGACTGTCATGACCACTGATGCACAAGCAG
AAGAGTTTACATTAGACATGATGACCGATAAACAAGCTCAAGTGCAAGTTGTTGTGGAAC
AGGAAGTCTCTGATGAAGTTGCCATGATACCTGAACAGACTGAACCCAAAGCAAAGAAAG
CGAAACGTTCTCTTAGTAATACTGCCACTGTGGCAGCACCACAAGGGGTTAATCCAGCCA
TGATGAGCAACCTTCTTCACACTGCTGCTGCCGTTGCTGCATCTCAAAATGCTGCTGCTG
CAACTGTCCAGGTTGTACCGGGTCAAGCTACTGGAACTATTCAACTTGTACCAGCTTCCG
AGGTTCAAAATACACAAGCATTGATGGCGTCTGGTATTGCACCTCAGTCCCTTAGCCCAC
AGACTATCGGTGTAGGTGAAGATGGGAAACCGCAAATCATTCCTCAACCTACCAATCAAC
CAGTATTTACCTATCTTGTGACGAGTCAAGGAACTCTGATATCCGCACATTCCAGTGATG
GCACTCCTTTGATATCTCCGGCGGAGGCAGAAAAAACACCCAAAGCGAAAGGAGAGGATA
CTGATGGAGATGCTGCTGGACATGGCAGTGGAGTTAATCAGCTGGGCGGAATGTATGTGA
ATGGTAGACCGCTTCCAGAACCAATTCGAAAACGCATCGTTGATCTTTCACATCAAGGTG
TTCGACCATGTGACATCTCACGACAATTACGAGTCTCACATGGATGCGTGAGCAAAATCC
TTGCAAGATTCTATGAGACCGGAAGCATTCGTCCAGGAGTAATAGGTGGCAGTAAACCTA
AAGTGGCCACACCACCAGTGGTGACAAAGATAACTGATTACAAACGAGAAAATCCTACCA
TGTTTGCATGGGAAATAAGGGATCGACTCTTATCAGAAGGTATCTGCTCATCAGACACTG
TTCCAAGTGTATCATCCATCAATAGAATTGTACGGAGCAAGACTGCCGACTTTATCAAAG
ACAATCAACATCTGACTAATCAAGCCAACATGGCTTCACCTCTCTTAGGATTAAAAGAAA
AAACTCATCTACCTACGATGGTGCATGGAATTCAGACTACTGAAAATCAGAGAGAGTCTG
ATTCACTTCAACATTATATTTCCATTGAAATGGTGCCATCATCAGGTTTTGCTCAAACTG
CTGGCAATCTAGTTCAATCTCCTACNTCACAGTCCATTGCTTCTGCAACCCAAGTAGTAT
CTGCTGCCAGTTTGACGTTGCCTCCACCTCCAGTAGTTCCGACTATTTCGGCATCAAAGA
CGGTGCAAGGACTTCCTCAGCAAATCTTTGCAAATTTGTCACAGCAACAGCAGTTTGACT
TGCTAAAAAGCGTTACAATCAGTGAAAACATTGCGATTCCTCAAAAAGACGATTCAAATG
TAACTGAAGGCAATGTCGCACCTGAACCAGCATTGCAGGAACAAACTCTATCTACGTTGG
AGATTCAAGAACAGGAACAGTCAACATCTACACAGAAGAGTGGTGAATTAGCATCGCAGA
ACGTCCAACTGCAAATTACAAGAGCTGATGGGCAACAGAGTGTCATTACGGTGACACAGC
AGCAACTTCAACAACTTGCCGCCCAAGGTATTGTCCTTCAGAGGAGTTCTCCAGAGAAAT
CCACACAAGCTGCCGCCCATTCTCAGATTGTTGGGTCTTCTGTTGTCTCACAAAATTCTC
CCCAAGAGCAGAGTATTTTGAAGACGATTCAAGATACCATCCTGGTAAAGCCTGAGCCTG
TGGAGACGCAGGAAATGCCGGATGGAGCTCTATCCCAGTCATCCTCCGCAGTAAGTCAAC
TGCTGCTTGCTGCACAGCAACAACTTCAACAACAAAACAAACAGAACACTACCGGCACCC
AAGAGGATGCTGCTCAAATTTTGACCGCTGTAACGATAGAAAATGCACAAAATACCTCTG
CTGGGGGATTAACGTCATCTATTGCTTTGACAAACTCCAACAACAGTAACAACACACAGC
AGCAGCAACAGATCTTAACAGCTAGTCCAAGTGTTCTGGCTTCTCTACAGCAACAACTTG
CTGGACTACAGCAACAACAGATCATCCAACCACAACAGAATGTGACTAGTACCCAGCAAG
ATCAAGCTGGTATCGTCCACATCTTGTCAGCTGCTGCACAAATACAACAACAAACTGGAG
CCAACACCAATTCGAACAATAACAATTCACTTCAGCAACAGTTGAATGTGGCACAAATGC
TGTCTGCTGCTCAACAAGGGGCAGCTCTCAAGAAAGCAACGGAACTGCAACCAGTCGGCA
CACTTCTAAGTCAGTTGCGACCGGTATCTATTCAGAACTCGTCCACAATCAGTGTGGTGT
CTGCAGATTCAACACCATCATCAGTAGCAACTGCATTACCACCTCTTGCTTTACCTTCTG
CCACCACTGCAGCATCGCAAGTTTCACAGATAGGCGCTTCTTCAACGAATGCATCCCGAC
CCTTCAACACAATATACAATCAAGCATGGAAAATGGCAACTAATGGTCAAAGAGTTGCTG
GAGAGGTGACTGTTGTTAGTGAGAGCTCAGCAAAGACAACCAGTGCCATTGTGGAGCAGG
ACTGNATGGAATGAAGAGAAATTTCTGATACATAATGCAGTGACATATCGCCCAGTAATA
AGCGGAATTATGGACAGAGTGAACTAGATCTTTTGAGTCGGTCAAATGTAGCTCTGTAAC
AAGGATTGAAGTTAAAAACTACTGCCATGGTTGCCTGCCGGTACATGATTTCAGCGTGTG
GAACGTTCTATTTTTGCTATCATCATTATGGAAATATTTTTTCTCTTAACCATCCTACCC
TTTCTAACCGGTTATCAAAAGATTTTTTTTTAATGAATTAAGTCCACACAGTAGTGAAAT
GTGTAGGTCAAAGAAAGCCTTGTATCGTTAGCATTTGGCCGTCTTATCCAAAAGAGTTGG
TAGTCAATTGCACCTTATTACAGACTCTGTCTGACGGGTGGTTTTCACCTATAGTGGTTT
GGCAATTTTTATGTCTGCGCCACTCAAAGCAAAATGTTTTTGAAAAAATTACTTGCACCA
CCATGAAACCATGAAACTAGCAATTCCTATGTGGAAAGCTGGCAAGTGCGGACTCGCGAC
ATGGTGGTTGAGACATCTGTCCCACTTTTGGNTCATATTTGCGCCACACAAGTGATACTC
AGTTGTCTCTCAGATATATTTGGGTGCTCTACTCCATGGATCCTAGTGATCCATGGGAAA
AGATTAAAATGCATGAGATGACTCACCCAGGATCGTTCTCTTACTGACTTGTGTACATCT
CTGTTGTCAGCACAGTAATTCTGTACTGCAGTTCTGCTTGATTTTTAACTTTATTGCACG
AGATAGATGTCTAGATCGAGAACAACTTCATGGTAATGGCTTGGAATATTTCCCAATGAA
CGAGTTTGAATGAGAGCACTCACGGCATTATTTGTTATCAATGAAAGCAACAACGAAGTA
CCGAATTCTGGAGATTGGGATCTAGATCTTGTACCCCCGATGAGCTAACTAAAACGTATG
ACGTGCAGTATGCTGCTGCTGTCTCGGTAACGAGTATTTGCCAATGCTTAGTTGTGTGGA
GTACGTTGTTGTATTAGCTTTATTCTTCTTCTATTATTGATGACATGCTAGTTTGAAGAT
AGCAGATGCTACATCTGTGATCTGTCGCTACTACCCGTACATAGTTTGATAACTTTGCAT
AGCGAGTTTGCCGTGGTCAGATACCTATCGAATAAGATGAAAAGTTGAATGTGAAGTGGT
TGGTGCTGCCACTCGCGTTACGCCGGGATATACTTGTTTGTCTCTGTAATTAACAGAATT
CGTGCTGGTGCATGTGAATTAACCCCCTTTCATACACTTTTGTGTCGGGGTGTGCTTGTT
ATTTCTGGTCTCGGAGTGGGTGCTGTTGATCTTCGACCGGTTAGCTCCCTCTTGCGTGTA
CATAGGAATTTATATTTTATTGCCGATAAGGAGCTTGGCGCGGTCATGTGTATAAGTCTT
CTCATTTTGTAATAAACATCTGCCACGTTGCACTCGGTTTTTTCC
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[279-353] 1.1E-37 - T[354-431] 2.9E-33 |
| CDD |
Paired_dom (IPR001523) - T[284-411] 9.32786E-76 |
| SMART |
Paired_dom (IPR001523) - T[285-409] 2.3E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[285-411] 61.231 |
| Pfam |
Paired_dom (IPR001523) - T[287-409] 6.8E-68 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[288-409] 4.18E-37 |
| PRINTS |
Paired_dom (IPR001523) - T[289-304] 5.0E-40 - T[307-325] 5.0E-40 - T[327-344] 5.0E-40 - T[345-362] 5.0E-40 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[319-335] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 81.25 % | 238 | 4.68E-70 |
| PAX2_HUMAN | 82.812 % | 242 | 2.93E-71 |
| PAX8_HUMAN | 83.721 % | 246 | 1.42E-72 |