- Transcript 'Cisavi.CG.ENS81.R17....' >
- Transcript 'Boleac.CG.SB_v3.S28....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S28.g06604.01.t
Possible name(s)
BRIP1; RTEL1; RTEL1-TNFRSF6B
Gene model
Location
S28 [344,529 / 349,922]
Amino acid sequence
Length: 916
>Boleac.CG.SB_v3.S28.g06604.01.p
MSSTTSSSHTLLLHGIEVEFPFKPYNEQLDYMKCVIESLQTGKNAILESPTGTGKTLCLL
CATLAWRRAELKKRAEKIMDAVGKEPEYPLGWGNSDEVPGQESKEVPTAPRIVYASRTHS
QLAQVVKELKRTSYAKDCKISIIGSRNQMCIHPEVSKQTNHVAMIHSCRNKVNKRLCHFY
NNVEIVRKSGSFTNEVLDIEELVELGKKRNACPYYAAREQSKEADCGMIFTPYNYLLDRK
SRKSNNLEVSGNIIIFDEAHNLEQICEESASFDLTSMDIGKCITETGDLLKAAIKLSETG
VLPEGYEAGESSXLGEFSLQELATLKAXFVQLEKNLNEVPLNNVKKRLSKPGRYMFQFLA
PLNINFATHEAVXDLVDKVVSYLSTLSNSFQTRGTALQKFSEVIKVIFXAAVGENPTXPS
TLINSRPATDMMMDELSKFYRVNIREEEKKPVKSSWSSTTPATTSSTSTQRVLSYWCFSP
GYAMRDLLACGVKSLILTSGTLSPIQSFTCELQVDFPISLQNTHVIDKHQVFVAALKKTL
TRRRLETTYKTRNDYNIAEDIGNLLVRIAEICPGGLLVFFPSYVAMEGYMKRWEEMGHNF
MKKIDLRKPCTVESRIKNSLKDSMDKYYLDVSKPQGASFFAICRGKVSEGLDFANDNGRA
VVIIGLPYPPAKDPXVNEKMDFLQTLRAAGGEKVMDGQKWYRLQAIRAVNQAIGRIIRHR
YDYGAIMLLDYRYADHDNFSELPKWIRPRMVEFDDAEKALRRLKSFFCSIREKEKVRLRS
IKSVEKENVSAVSTEKSDQSASHPKSGNMFFGVSRKKSDVKSQYFSQSTNPAMKTNKTFL
SIPKANDLSNHIPPSVVANLASRPQAAPGGSCSGCPESTKKRQVDDDSDTNLVPIKNARK
KSKSISLFDALSNTKN
Nucleotide sequence
Length: 2,748
>Boleac.CG.SB_v3.S28.g06604.01.t
ATGTCATCAACAACAAGTAGCTCACATACACTTCTCTTACATGGGATTGAGGTTGAGTTT
CCATTCAAACCTTACAACGAACAACTGGACTACATGAAATGCGTAATAGAATCATTGCAA
ACTGGAAAAAATGCTATTCTCGAATCACCCACAGGAACAGGAAAGACTTTATGTTTGCTT
TGTGCAACATTAGCTTGGCGAAGAGCTGAGTTGAAAAAAAGAGCTGAAAAGATCATGGAT
GCGGTGGGTAAGGAACCTGAATATCCTCTGGGATGGGGCAATAGTGATGAAGTCCCTGGG
CAAGAAAGCAAAGAAGTCCCTACTGCTCCCAGGATTGTGTACGCCTCACGTACACACTCT
CAGCTTGCTCAAGTTGTCAAAGAATTGAAACGGACTTCGTACGCCAAAGATTGTAAAATC
AGTATAATAGGATCTCGTAATCAGATGTGTATCCATCCGGAAGTTTCGAAGCAAACTAAC
CATGTTGCTATGATTCACTCATGTAGGAACAAAGTGAACAAGCGTCTTTGTCATTTTTAT
AATAATGTCGAAATTGTCAGGAAGTCTGGTTCATTCACTAATGAGGTGCTTGATATTGAA
GAACTGGTCGAACTTGGGAAAAAGAGAAATGCTTGTCCCTATTATGCTGCAAGGGAACAG
TCCAAAGAAGCCGATTGTGGAATGATATTTACGCCATACAACTACCTTCTTGACAGAAAA
TCTCGAAAATCCAATAATCTGGAAGTGTCTGGAAATATCATCATTTTTGACGAGGCTCAC
AATTTGGAACAAATATGCGAAGAATCAGCTTCCTTCGATCTCACCTCAATGGATATTGGA
AAATGTATCACTGAAACAGGGGATCTACTCAAAGCAGCAATAAAGTTGAGCGAAACTGGA
GTTCTTCCTGAAGGATATGAAGCAGGGGAATCAAGTNCTCTCGGTGAGTTTAGCCTTCAA
GAATTGGCGACTTTGAAAGCATTNTTTGTCCAGCTTGAAAAAAATCTNAACGAAGTGCCT
TTAAATAATGTGAAGAAGCGTCTGTCTAAGCCTGGAAGGTACATGTTCCAGTTCCTTGCC
CCATTGAATATAAACTTCGCAACTCATGAAGCAGTGATNGACTTGGTCGATAAAGTAGTA
TCNTACTTGTCGACGTTGAGTAATTCATTTCAAACTCGTGGAACNGCTTTACAAAAATTT
TCAGAAGTGATCAAGGTGATATTCAGNGCTGCCGTTGGTGAAAATCCNACTNTACCATCA
ACCCTCATCAATTCACGTCCCGCAACAGACATGATGATGGATGAACTTTCCAAATTTTAT
CGTGTGAATATTCGTGAGGAAGAAAAAAAGCCTGTGAAAAGCTCGTGGAGCTCAACAACT
CCTGCAACGACAAGTTCTACTTCGACTCAACGTGTTTTGAGTTATTGGTGCTTCAGCCCG
GGTTATGCAATGCGAGACCTTCTCGCTTGTGGTGTTAAGAGTCTAATTTTAACGAGTGGA
ACATTATCACCAATTCAGTCATTCACTTGTGAATTGCAAGTTGACTTTCCAATCAGCTTA
CAAAACACTCATGTTATTGATAAACATCAAGTTTTTGTTGCCGCGCTGAAGAAAACATTG
ACTCGAAGAAGGCTAGAGACAACGTATAAGACAAGAAATGATTACAACATAGCTGAAGAC
ATTGGCAATTTGCTTGTGCGTATTGCTGAAATTTGTCCTGGAGGATTACTGGTCTTTTTT
CCATCTTATGTAGCCATGGAAGGTTATATGAAGAGGTGGGAGGAAATGGGCCATAATTTT
ATGAAAAAGATTGATCTGCGAAAGCCATGTACTGTCGAGTCAAGAATTAAAAACAGCTTG
AAAGACTCCATGGATAAATATTATTTAGATGTGTCAAAACCTCAAGGGGCTTCATTCTTT
GCGATATGCAGGGGAAAGGTATCAGAAGGACTCGACTTTGCAAATGATAATGGACGAGCT
GTTGTAATAATCGGCTTGCCATACCCTCCTGCAAAAGATCCCAGNGTGAATGAGAAGATG
GACTTCCTCCAAACACTTCGTGCCGCTGGTGGGGAAAAGGTCATGGATGGTCAAAAGTGG
TACAGATTACAAGCTATTAGAGCAGTGAATCAGGCAATTGGTCGTATCATCCGACACCGT
TACGATTATGGAGCGATTATGTTGTTGGATTATCGTTATGCTGATCATGACAATTTCAGT
GAATTACCCAAGTGGATTCGACCACGGATGGTTGAATTTGATGATGCAGAAAAGGCTTTA
AGAAGGCTAAAATCATTCTTTTGCTCAATCCGTGAGAAGGAGAAGGTGAGACTTCGTTCC
ATAAAAAGTGTGGAGAAGGAAAACGTGAGTGCTGTGTCTACTGAAAAAAGTGACCAGAGC
GCAAGCCATCCGAAAAGTGGAAACATGTTCTTTGGAGTTTCCCGTAAAAAGTCAGACGTC
AAAAGTCAATACTTTTCTCAATCAACCAACCCAGCAATGAAAACGAACAAAACGTTTCTC
AGCATTCCAAAAGCTAACGATTTATCGAATCATATTCCTCCATCGGTGGTTGCAAACTTA
GCAAGCCGTCCTCAAGCTGCCCCTGGTGGATCATGTTCAGGATGCCCGGAGTCTACCAAA
AAAAGACAAGTAGACGATGACAGTGATACAAATCTTGTACCGATTAAAAATGCCAGAAAG
AAATCNAAATCAATATCACTCTTTGATGCATTAAGTAACACTAAAAAC
| ProSiteProfiles |
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[14-306] 28.994 |
| SMART |
Helicase-like_DEXD_c2 (IPR006554) - T[16-299] 6.6E-58 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[17-73] 4.49E-12 - T[35-69] 7.77E-11 - T[108-130] 7.77E-11 - T[111-149] 4.49E-12 - T[209-285] 7.77E-11 - T[221-263] 4.49E-12 - T[491-505] 7.77E-11 - T[539-729] 7.77E-11 |
| TIGRFAM |
Rad3/Chl1-like (IPR013020) - T[18-758] 4.5E-139 |
| Pfam |
DEAD_2 (IPR010614) - T[114-278] 5.2E-51 |
| Pfam |
ATP-dep_Helicase_C (IPR006555) - T[565-748] 4.0E-50 |
| SMART |
ATP-dep_Helicase_C (IPR006555) - T[583-735] 4.2E-47 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX12_HUMAN | 24.23 % | 208 | 1.09E-55 |
| FANCJ_HUMAN | 36.964 % | 211 | 2.5E-56 |
| RTEL1_HUMAN | 40.759 % | 629 | 0 |