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  1. Transcript 'Moocci.CG.ELv1_2.S40...'
  2. Transcript 'KH2012:KH.C5.42.v1.A...'
  3. Transcript 'KH2012:KH.C8.291.v3....'
  4. Transcript 'Phmamm.CG.MTP2014.S1...'
  5. Transcript 'Boleac.CG.SB_v3.S326...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S326.g07750.01.t

Possible name(s)

LRP1; LRP1B; SSPO

Location

S326 [118,081 / 120,973]

Sequences

Amino acid sequence

Length: 450

>Boleac.CG.SB_v3.S326.g07750.01.p
MDVASGQFTNNTTSPTNNTTCQIDQFTCSNGNCVDQSLVCNGVDNCGDGTDERTFMCKRV
LSTCWRWQKDCHRNKCRRGTFQCDNGKCINVTDVCDRVDHCGDGTDELRYAVGFKCPIGR
KGDTCVLPRRHVNDRYPHCINEEDESVTEDKVRRLFVCFDKSHKISQFQMCDGVIDCPDL
SDECACENRTNLICDNFCKKVSSMENCTFRMITCGDGVQIFPNQVCDGKVDCPRGLDERH
CSKHSKRKVISCPGNVHNTSRKLARLCDGRPECYDLSDECNPQCGRKQPAFCNLKFANVP
FQRECKTDTGTLNFTVEHICDGEFSPCNLTYEESGCYARHYCTSDNLISIDNTLKCNGYT
ECDEGSDEDECSGSRFSCRVKRTRGGQESVPVNFVVDGVADCANAKDECPTDLDDFTRPI
GSQTDLLGINFFQTWIFWIFYGVERVFVKE

Nucleotide sequence

Length: 1,353

>Boleac.CG.SB_v3.S326.g07750.01.t
ATGGACGTGGCAAGCGGTCAATTCACCAACAATACAACATCGCCAACAAATAACACAACG
TGTCAGATAGATCAGTTTACATGTTCCAACGGAAACTGCGTCGACCAGTCTCTAGTATGT
AACGGAGTTGACAACTGCGGCGATGGTACAGACGAACGAACGTTCATGTGTAAGAGAGTA
CTATCGACATGTTGGCGATGGCAAAAAGATTGTCATCGTAATAAATGCAGGCGTGGAACA
TTTCAATGTGACAATGGAAAATGCATTAATGTCACAGATGTTTGTGATAGAGTGGATCAT
TGCGGTGATGGAACAGATGAGTTGAGATACGCTGTTGGTTTCAAATGTCCAATAGGACGC
AAAGGAGATACGTGTGTGTTACCACGACGGCATGTAAATGACAGATACCCTCATTGCATA
AACGAAGAAGATGAGTCTGTGACGGAAGATAAAGTTCGTCGATTATTTGTATGCTTTGAC
AAGTCGCATAAGATTTCCCAATTTCAAATGTGCGATGGTGTAATTGACTGTCCTGATTTG
TCAGATGAGTGTGCATGCGAAAATCGCACCAATTTAATATGTGATAACTTCTGCAAAAAA
GTCTCAAGTATGGAAAATTGCACTTTTCGGATGATAACATGTGGGGATGGGGTTCAAATA
TTCCCTAACCAAGTGTGTGATGGTAAAGTTGATTGTCCACGGGGACTTGATGAAAGACAC
TGTAGTAAGCATTCAAAACGAAAAGTAATTTCATGCCCGGGGAATGTACACAACACATCA
CGGAAACTGGCTCGGTTATGTGATGGACGACCTGAATGTTATGATTTATCTGATGAATGT
AATCCGCAATGTGGTAGAAAGCAACCGGCATTTTGCAACTTGAAATTTGCCAATGTCCCT
TTTCAACGCGAATGCAAAACTGACACAGGAACATTGAATTTTACTGTGGAGCATATTTGT
GATGGTGAATTTTCTCCATGTAATTTGACATATGAAGAAAGTGGCTGTTATGCAAGACAT
TACTGTACAAGTGACAACCTTATCAGTATTGACAACACATTGAAATGCAATGGCTATACA
GAATGTGATGAAGGCAGCGATGAGGATGAATGTAGCGGAAGCAGATTTTCCTGCCGCGTT
AAAAGAACAAGAGGCGGTCAAGAATCTGTTCCAGTGAATTTTGTAGTTGATGGAGTAGCA
GACTGTGCTAATGCTAAAGACGAATGTCCAACTGATTTAGACGACTTCACTCGGCCTATT
GGATCACAAACTGATTTATTAGGGATAAATTTTTTCCAAACATGGATATTTTGGATATTT
TATGGAGTAGAACGTGTGTTTGTAAAAGAATGA

InterProScan

SUPERFAMILY
LDL_receptor-like_sf (IPR036055) - T[18-58] 1.35E-10 - T[71-110] 1.5E-9 - T[155-186] 5.24E-6 - T[204-241] 7.2E-8
Pfam
LDrepeatLR_classA_rpt (IPR002172) - T[19-53] 5.7E-9 - T[75-108] 1.5E-7
SMART
LDrepeatLR_classA_rpt (IPR002172) - T[20-59] 1.2E-10 - T[75-112] 1.2E-9 - T[151-188] 0.0059 - T[206-243] 3.6E-6 - T[251-282] 1.2 - T[335-373] 0.13
ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[20-58] 12.55 - T[75-117] 11.425 - T[206-242] 9.05 - T[326-372] 8.512
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[21-53] 3.14635E-7 - T[76-108] 2.13015E-6 - T[207-241] 0.0010949
PRINTS
LDrepeatLR_classA_rpt (IPR002172) - T[31-52] 9.3E-25 - T[86-107] 9.3E-25 - T[162-183] 9.3E-25 - T[217-238] 9.3E-25 - T[258-279] 9.3E-25 - T[347-368] 9.3E-25
ProSitePatterns
LDLR_class-A_CS (IPR023415) - T[33-57] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LRP1_HUMAN 28.095 % 83.2 9.8E-17
LRP1B_HUMAN 29.31 % 97.1 3.05E-21
SSPO_HUMAN 28.707 % 94 2.83E-20





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