- Transcript 'Boleac.CG.SB_v3.S210...' >
- Transcript 'Phfumi.CG.MTP2014.S8...' >
- EST 'AHC0AAA232YK07_RM1' >
- Transcript 'Harore.CG.MTP2014.S7...' >
- Transcript 'Boleac.CG.SB_v3.S326...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S326.g07750.01.t
Possible name(s)
LRP1; LRP1B; SSPO
Gene model
Location
S326 [118,081 / 120,973]
Amino acid sequence
Length: 450
>Boleac.CG.SB_v3.S326.g07750.01.p
MDVASGQFTNNTTSPTNNTTCQIDQFTCSNGNCVDQSLVCNGVDNCGDGTDERTFMCKRV
LSTCWRWQKDCHRNKCRRGTFQCDNGKCINVTDVCDRVDHCGDGTDELRYAVGFKCPIGR
KGDTCVLPRRHVNDRYPHCINEEDESVTEDKVRRLFVCFDKSHKISQFQMCDGVIDCPDL
SDECACENRTNLICDNFCKKVSSMENCTFRMITCGDGVQIFPNQVCDGKVDCPRGLDERH
CSKHSKRKVISCPGNVHNTSRKLARLCDGRPECYDLSDECNPQCGRKQPAFCNLKFANVP
FQRECKTDTGTLNFTVEHICDGEFSPCNLTYEESGCYARHYCTSDNLISIDNTLKCNGYT
ECDEGSDEDECSGSRFSCRVKRTRGGQESVPVNFVVDGVADCANAKDECPTDLDDFTRPI
GSQTDLLGINFFQTWIFWIFYGVERVFVKE
Nucleotide sequence
Length: 1,353
>Boleac.CG.SB_v3.S326.g07750.01.t
ATGGACGTGGCAAGCGGTCAATTCACCAACAATACAACATCGCCAACAAATAACACAACG
TGTCAGATAGATCAGTTTACATGTTCCAACGGAAACTGCGTCGACCAGTCTCTAGTATGT
AACGGAGTTGACAACTGCGGCGATGGTACAGACGAACGAACGTTCATGTGTAAGAGAGTA
CTATCGACATGTTGGCGATGGCAAAAAGATTGTCATCGTAATAAATGCAGGCGTGGAACA
TTTCAATGTGACAATGGAAAATGCATTAATGTCACAGATGTTTGTGATAGAGTGGATCAT
TGCGGTGATGGAACAGATGAGTTGAGATACGCTGTTGGTTTCAAATGTCCAATAGGACGC
AAAGGAGATACGTGTGTGTTACCACGACGGCATGTAAATGACAGATACCCTCATTGCATA
AACGAAGAAGATGAGTCTGTGACGGAAGATAAAGTTCGTCGATTATTTGTATGCTTTGAC
AAGTCGCATAAGATTTCCCAATTTCAAATGTGCGATGGTGTAATTGACTGTCCTGATTTG
TCAGATGAGTGTGCATGCGAAAATCGCACCAATTTAATATGTGATAACTTCTGCAAAAAA
GTCTCAAGTATGGAAAATTGCACTTTTCGGATGATAACATGTGGGGATGGGGTTCAAATA
TTCCCTAACCAAGTGTGTGATGGTAAAGTTGATTGTCCACGGGGACTTGATGAAAGACAC
TGTAGTAAGCATTCAAAACGAAAAGTAATTTCATGCCCGGGGAATGTACACAACACATCA
CGGAAACTGGCTCGGTTATGTGATGGACGACCTGAATGTTATGATTTATCTGATGAATGT
AATCCGCAATGTGGTAGAAAGCAACCGGCATTTTGCAACTTGAAATTTGCCAATGTCCCT
TTTCAACGCGAATGCAAAACTGACACAGGAACATTGAATTTTACTGTGGAGCATATTTGT
GATGGTGAATTTTCTCCATGTAATTTGACATATGAAGAAAGTGGCTGTTATGCAAGACAT
TACTGTACAAGTGACAACCTTATCAGTATTGACAACACATTGAAATGCAATGGCTATACA
GAATGTGATGAAGGCAGCGATGAGGATGAATGTAGCGGAAGCAGATTTTCCTGCCGCGTT
AAAAGAACAAGAGGCGGTCAAGAATCTGTTCCAGTGAATTTTGTAGTTGATGGAGTAGCA
GACTGTGCTAATGCTAAAGACGAATGTCCAACTGATTTAGACGACTTCACTCGGCCTATT
GGATCACAAACTGATTTATTAGGGATAAATTTTTTCCAAACATGGATATTTTGGATATTT
TATGGAGTAGAACGTGTGTTTGTAAAAGAATGA
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[18-58] 1.35E-10 - T[71-110] 1.5E-9 - T[155-186] 5.24E-6 - T[204-241] 7.2E-8 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[19-53] 5.7E-9 - T[75-108] 1.5E-7 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[20-59] 1.2E-10 - T[75-112] 1.2E-9 - T[151-188] 0.0059 - T[206-243] 3.6E-6 - T[251-282] 1.2 - T[335-373] 0.13 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[20-58] 12.55 - T[75-117] 11.425 - T[206-242] 9.05 - T[326-372] 8.512 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[21-53] 3.14635E-7 - T[76-108] 2.13015E-6 - T[207-241] 0.0010949 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[31-52] 9.3E-25 - T[86-107] 9.3E-25 - T[162-183] 9.3E-25 - T[217-238] 9.3E-25 - T[258-279] 9.3E-25 - T[347-368] 9.3E-25 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[33-57] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1_HUMAN | 28.095 % | 83.2 | 9.8E-17 |
| LRP1B_HUMAN | 29.31 % | 97.1 | 3.05E-21 |
| SSPO_HUMAN | 28.707 % | 94 | 2.83E-20 |