- Transcript 'Harore.CG.MTP2014.S2...' >
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- Transcript 'Boleac.CG.SB_v3.S332...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S332.g07903.01.t
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
S332 [89,813 / 112,472]
Amino acid sequence
Length: 1,421
>Boleac.CG.SB_v3.S332.g07903.01.p
MQTLPTYHHSKSSTPLFLFRLLSHNEITCIHDSSLRSVRRLEYFTLDNNKITTLAPESFS
SLDRLRTFRFHNNPLNCNCHLSWIAEWLRDRPXAGLFTQCAEPIHLRGTEIKHIQASEFV
CTGKPLITLSSMLIDSRLEHNQIKVIPPRAFARYKKLRRIDLSNNAITEISENAFQGVKH
LVSLILYENKITSLPRNVFSGLSNLEXLLLNANKISCXRXDAFDGLTSLKLLSLYDNKLQ
TIAKGTFRNLRSIQNLHLAQNPYICDCNMRWLADYLQASPVETSGAKCAAPRKLTNKKIG
HIKARRFKCDDGNNFPSPYAGQCSPEAECPPKCSCTGTVVDCSNQQLTDIPDNIPXYTTE
LNLAFNDIETLASLDIFKKLVNLKKIDLSNNKLSIIEEGAFNGANSVLEIWMNDNELENL
KGSMFSGLSNLRTLNIRNNLLRCINNETFAGXTTVTHLSLYGNRITRIAEGAFDGXSSMI
LLNLLSNPLICDCHLLWLSVWLRLGTFNSANPRCQEPATLRGFPVSDIYSRDFRCTAXVA
AQPPTCEPEVMCPERCTCEGXRTVVRCISLGLTSIPVDDIPPTVTELYLNLNKIKLIPAT
IKRFTKLEILDLSNNMIATLQDHLFSNSTRLAKLLLPYNHLRCLPRHGFTGLRSLRILSL
HGNEISTVQHGTFDDLTSLTHIALGANPWYCDCNLAWFRDWINTDYKEPGTAQCSGPTPV
AGMVLLTTPASHFTCNGPLSIPIASKCDPCLSGPCLHNGTCRLHPEEYYQCICPTGFKGK
HCEMPVNACNLHPCRNGATCHGRNEISYKCTCPPGFTGFDCEINIDECALNQCRPHNATC
IDGINSFTCRCPAGWSGEYCQIEIEDPCETNPCLNNGRCFPHLXDNSDISFTCDCEFGFR
GENCSERWDPCENHKCVNEGTCVHDSSGSAGYRCDCPPGYQGLYCDFIVGNSALTLQDDP
CSQHDCQNDAQCRVQPGSSDVVCQCLHGFSGDKCELLSGITFLHNGSYAQIDEAYEGMDE
LRISLEISTHQPNGVIFYAGELGSEGSRHVVIELFSGHVRFNYDGINRAMYSEDIINDEE
FHTIEIMMGVNGVTMQVDDSRHYQTPSSKPVNMVSPMFVGGIPGNMWAGARRAWQIRNST
SFIGCIRNLLFDGQMVDFSTASQGSYSDLFQEETGVKKGCQRVSEPWICNDATCKFGDCI
TNDTQGTFCKCHEGYDGRHCDIEDSEPTACSGHLCEHGMCVVTGADASTYVCECDAGYSG
RYCDVRDYCARVSCGQHGVCVATSNGYTCKCKQGYQGRRCEKRVRRCSGTRLRQYVQITV
PRPTPSSPGASETMLCKSSKRVSNLVCDGSSCTRSRRNSRRRRNRESDQTAIIHSLSQSS
SRTCCAPLRQRKKNITLQCEDGSTITQQVTKVQSCGCQACS
Nucleotide sequence
Length: 5,288
>Boleac.CG.SB_v3.S332.g07903.01.t
ATGCAGACGCTGCCAACTTACCATCATAGCAAATCTTCAACACCACTATTTCTGTTCAGG
TTGCTTAGTCACAACGAAATCACCTGCATTCACGATAGTAGCCTACGATCAGTCAGACGG
CTCGAGTATTTCACCCTCGACAACAACAAAATCACCACTTTGGCGCCAGAGAGTTTTTCC
AGCCTCGACAGACTAAGGACATTCCGTTTCCACAACAATCCGTTGAATTGCAATTGCCAT
CTCAGTTGGATAGCTGAGTGGTTGCGTGATCGACCAAGNGCAGGACTTTTCACACAATGC
GCNGAGCCTATTCATCTACGAGGAACGGAAATTAAACACATACAAGCCAGCGAATTTGTT
TGCACTGGTAAGCCTCTCATTACGTTATCCTCNATGTTGATAGATAGTCGTTTGGAACAC
AACCAAATCAAAGTTATTCCACCAAGAGCTTTCGCTAGGTACAAGAAATTGAGGAGAATA
GACTTGAGCAATAACGCGATTACGGAGATTTCAGAAAACGCATTCCAAGGAGTCAAGCAT
TTGGTTTCACTAATTCTGTACGAAAACAAAATCACGAGTTTGCCAAGAAATGTGTTTTCT
GGGTTATCAAATCTTGAANTGCTCCTTTTGAATGCCAACAAAATCTCTTGTTTNCGTCAN
GATGCNTTCGATGGACTCACTTCGCTCAAACTATTGTCTTTGTATGATAACAAACTGCAG
ACGATCGCNAAAGGAACTTTCCGAAACTTGAGATCTATTCAAAATCTGCACTTGGCGCAA
AATCCTTACATATGTGACTGTAACATGCGTTGGTTGGCCGATTACTTGCAAGCTAGTCCA
GTTGAAACCAGTGGGGCAAAATGCGCCGCTCCCAGGAAACTCACAAACAAAAAAATCGGA
CACATCAAAGCAAGACGATTCAAATGCGACGATGGAAATAATTTCCCGTCACCATACGCT
GGACAATGCAGCCCTGAAGCCGAATGTCCTCCTAAATGTAGTTGCACAGGAACTGTAGTC
GATTGCTCCAACCAACAACTTACCGATATACCAGACAATATCCCGNCTTACACGACCGAA
TTAAACTTGGCGTTCAACGACATTGAAACATTGGCGAGTCTGGACATTTTCAAGAAACTT
GTCAATTTGAAGAAAATCGATCTATCTAACAATAAATTGTCGATTATTGAGGAAGGTGCC
TTCAATGGAGCAAATAGTGTGTTGGAAATATGGATGAACGACAATGAACTTGAAAATTTG
AAAGGATCCATGTTTTCTGGTCTTTCCAATCTTAGGACTTTGAATATCCGGAATAACTTG
TTACGTTGTATTAATAATGAGACTTTTGCTGGTNTAACAACGGTCACTCATCTGTCGCTG
TATGGAAACAGAATTACGCGCATTGCAGAAGGAGCTTTTGATGGTNTATCGTCTATGATT
TTATTAAATCTTCTTTCAAACCCATTGATTTGCGACTGTCATCTCTTGTGGTTGTCTGTT
TGGCTACGTTTGGGAACTTTCAACTCGGCGAATCCAAGATGTCAGGAACCTGCTACGTTA
CGCGGATTTCCAGTTTCTGATATTTATTCACGAGATTTTCGATGCACAGCGAANGTTGCT
GCTCAGCCACCGACTTGTGAACCAGAAGTGATGTGTCCTGAAAGATGTACTTGTGAAGGT
ANGCGGACTGTGGTACGTTGTATAAGTTTGGGCCTCACTTCTATTCCTGTCGATGATATC
CCACCAACTGTTACCGAGCTCTATTTGAACCTCAACAAGATCAAACTCATTCCGGCGACA
ATTAAAAGATTTACTAAATTAGAAATTTTGGATCTCAGTAATAATATGATAGCGACATTG
CAAGATCATCTCTTCAGCAATTCTACTCGATTAGCAAAACTTTTACTGCCATACAACCAT
CTGAGATGTTTACCTCGTCATGGATTCACTGGATTGCGAAGCTTGAGAATTTTGAGTTTA
CATGGTAACGAGATATCTACTGTGCAGCATGGAACATTTGACGATCTAACGTCATTAACN
CATATCGCTCTAGGAGCCAACCCTTGGTACTGTGACTGCAATTTGGCATGGTTTCGGGAT
TGGATTAACACNGACTATAAAGAACCAGGAACCGCTCAGTGTTCAGGACCTACTCCTGTA
GCGGGTATGGTTTTGCTAACGACACCAGCCTCTCATTTCACCTGCAATGGTCCTCTCAGT
ATTCCNATTGCTTCAAAATGTGACCCGTGTCTCTCAGGCCCTTGTCTTCATAATGGAACT
TGCCGGCTTCATCCTGAAGAGTACTACCAATGCATATGTCCTACAGGTTTCAAAGGGAAG
CATTGTGAAATGCCAGTGAACGCTTGTAACTTACATCCTTGTAGAAATGGTGCAACGTGT
CATGGCCGTAACGAAATCTCCTACAAGTGTACTTGCCCACCTGGTTTTACTGGCTTTGAT
TGTGAGATAAATATTGATGAATGTGCATTAAATCAATGCAGACCGCATAATGCTACATGC
ATTGATGGTATCAACAGCTTTACATGTCGCTGCCCAGCTGGATGGTCTGGAGAATATTGT
CAGATTGAGATCGAAGATCCGTGCGAAACAAATCCTTGCCTAAATAATGGAAGATGTTTT
CCTCATTTGNATGATAACAGTGATATAAGCTTCACATGTGATTGTGAATTTGGATTTCGT
GGNGAAAATTGTTCTGAGAGATGGGATCCGTGCGAGAATCACAAATGCGTGAACGAAGGC
ACTTGTGTTCATGATAGTTCGGGCAGTGCTGGATACAGATGCGATTGTCCACCGGGTTAC
CAAGGATTGTATTGTGACTTTATCGTCGGCAACTCTGCCCTCACTCTGCAGGACGATCCT
TGCTCCCAGCACGATTGCCAAAACGATGCTCAATGTCGTGTACAACCTGGATCATCAGAC
GTTGTCTGCCAATGTTTGCATGGATTCAGTGGCGATAAGTGTGAATTGTTATCTGGAATC
ACTTTTCTTCACAATGGTAGTTATGCTCAAATCGATGAAGCTTATGAAGGAATGGATGAA
TTAAGAATTAGTTTGGAGATCTCAACACACCAGCCGAATGGAGTGATATTTTACGCCGGA
GAGTTGGGTTCTGAAGGTAGCAGACATGTTGTGATCGAGTTGTTCTCAGGNCACGTTCGT
TTCAACTATGATGGTATCAATCGGGCAATGTATTCTGAAGATATTATCAATGATGAAGAG
TTTCACACAATTGAAATTATGATGGGCGTCAACGGTGTCACCATGCAGGTTGACGATTCA
AGACATTATCAAACTCCAAGCAGTAAACCGGTCAACATGGTTTCACCTATGTTTGTGGGT
GGAATTCCTGGTAATATGTGGGCTGGAGCAAGAAGAGCNTGGCAAATTCGAAATTCTACC
AGCTTCATCGGTTGTATACGGAATTTATTATTCGATGGTCAAATGGTTGACTTTTCTACT
GCAAGTCAAGGTTCCTACTCTGACCTTTTCCAAGAAGAAACGGGGGTGAAGAAAGGATGC
CAGCGAGTATCAGAACCATGGATATGTAATGACGCTACATGCAAGTTTGGCGATTGCATC
ACAAATGATACTCAAGGAACATTCTGCAAATGTCATGAAGGATATGATGGACGCCATTGT
GATATAGAAGATTCAGAACCTACGGCTTGTTCTGGTCATTTGTGTGAACATGGGATGTGT
GTTGTAACAGGAGCGGACGCGAGTACATATGTATGTGAATGTGACGCAGGGTACAGTGGA
AGGTACTGTGACGTTCGTGATTACTGTGCAAGAGTAAGTTGTGGACAGCACGGTGTTTGT
GTAGCAACTTCGAACGGTTATACTTGCAAATGCAAACAAGGATATCAAGGACGACGCTGT
GAAAAACGTGTCAGAAGATGCAGTGGCACACGGTTACGACAATACGTGCAGATTACTGTT
CCTAGACCAACTCCATCAAGCCCCGGAGCCTCAGAAACAATGCTATGCAAGAGCAGCAAG
CGAGTTTCTAATCTTGTTTGCGATGGATCTTCATGCACACGATCACGTAGAAATTCTCGG
CGGCGTCGAAACAGAGAATCTGACCAGACTGCGATTATTCATTCTTTAAGCCAATCATCT
TCAAGGACGTGCTGCGCTCCGTTGAGACAGAGAAAGAAAAATATCACGCTACAATGTGAA
GACGGATCTACAATTACACAGCAAGTGACAAAGGTTCAAAGCTGTGGTTGTCAAGCTTGC
TCGTGAACAAAGCCTGCTGAGTCTTCATCAAAGGCTACGGGTCTGATCCAGAGTCGGAAA
GGACAATCGTACGAGTGGTAAAGATAGCGGGACCATCTTTCCCATTTGAAGCCATGTAGA
TCTGAGAACATCACAACGAGTTGTGTACTTTTGTACATGAATTTAGGCATTCATTCATCC
AGAAGACATGTGAATTTCATTTAACAACGTATGGTAGTACACCAATCTATGTCAATATGA
AAGAACTTTGTCAGTGTGCTGTTCCTGTGATCGCGTATTCATGTATGAGGTGCAGGGTAT
TATGTATAAGTCCTCCGCATCAATGGACGCATTGTCACGATGCCTGAAAAGTTCATTGCA
AAACAGCTACACTACTGTAATTAATTCCAGTTTCATTAACACATGACTCTTAGTGTTAGA
GAATGAATGTGTACTACTAGCTACACAGTACAAGTTTCCATATAGTTTGATGGGCGATGT
TTGGTAGCAGATAAAATTCATTGTTGTTTTTTATCCAAAGAATCTTGGGCCTGGCCTATT
GATTATCATATTTTGAAATTAGAAAAAGCGATGCCATCCAAGTCGAGTCATTATATAGCA
TCTGCTGAGAAATATACTCAGCGGCAAAGCACAGTAGCAGATATGTATCGATGAACTGTC
TTTCTGTCATCTATAGTCGTAGTCGCCAAACCCCGTCTAGAATATATCTCATGTGAGACA
AGGCTTTTATCCCAGCCAAAGTCCTTTAATACTCGAGTTGTGGAGTCTGTATATATATAC
TGTAATGAGAGAACAATGCTATCTCTGCTATTTATGTTTTGCATATATATTTTTTAAGAC
TAAGAATGTCAACTATTCTATTCTTAATTCTATGTAAGTGTAAAAGGTCTTCTTGACAGT
ACATTTTTCAAGTGTTTACTATTCTTTTTACAAACCTTTTCGTTTCAGCAAATTTGTTTT
ATAAAAAACTCACTTTGGAATATTCTCGGTGACTTTGTAGAATTTTTATCCCCCAAAGTA
TGATAAAA
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[17-37] 5.101 - T[40-61] 6.873 - T[132-153] 4.585 - T[156-177] 7.951 - T[180-201] 6.434 - T[204-227] 5.325 - T[228-249] 6.187 - T[357-378] 5.725 - T[382-403] 7.365 - T[430-451] 7.15 - T[454-475] 5.671 - T[583-604] 4.732 - T[606-627] 7.735 - T[630-651] 4.971 - T[654-675] 6.164 |
| Gene3D |
LRR_dom_sf (IPR032675) - T[21-123] 4.3E-25 - T[125-315] 1.2E-55 - T[326-540] 1.1E-56 - T[550-738] 3.9E-52 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[22-75] 1.4E-8 - T[156-215] 6.5E-14 - T[630-687] 5.7E-11 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[38-61] 0.97 - T[129-153] 150.0 - T[154-177] 0.21 - T[178-201] 0.02 - T[202-225] 2.6 - T[226-249] 0.0031 - T[380-403] 3.1E-4 - T[428-451] 0.078 - T[452-475] 17.0 - T[604-627] 0.013 - T[629-651] 190.0 - T[652-675] 0.0023 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[73-122] 4.9E-10 - T[261-310] 4.4E-5 - T[487-536] 5.5E-8 - T[687-736] 7.5E-12 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[97-121] 0.0079 - T[511-535] 0.088 - T[712-735] 1.6 |
| SMART |
LRRNT (IPR000372) - T[328-360] 4.3E-8 - T[551-586] 0.0068 |
| Pfam |
LRRNT (IPR000372) - T[329-355] 1.8E-6 |
| Pfam |
LRR_5 (IPR026906) - T[376-478] 8.7E-11 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[746-783] 0.046 - T[785-822] 5.6E-4 - T[824-861] 2.4E-11 - T[865-905] 0.71 - T[907-946] 0.28 - T[1221-1264] 0.92 - T[1267-1301] 0.0017 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[748-783] 18.164 - T[785-822] 21.461 - T[824-861] 21.807 - T[864-905] 18.822 - T[907-946] 20.019 - T[957-995] 18.805 - T[1185-1221] 8.603 - T[1226-1264] 13.353 - T[1265-1301] 17.486 |
| SMART |
EGF-like_dom (IPR000742) - T[749-783] 1.5E-4 - T[788-822] 1.4E-7 - T[827-861] 2.3E-7 - T[867-905] 2.2E-5 - T[910-946] 1.1E-5 - T[960-995] 6.2E-4 - T[1188-1221] 0.33 - T[1229-1264] 6.1E-4 - T[1268-1301] 3.7E-5 |
| Pfam |
EGF-like_dom (IPR000742) - T[750-781] 3.0E-7 - T[789-818] 6.8E-5 - T[961-992] 1.4E-4 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[771-782] . - T[771-782] . - T[810-821] . - T[810-821] . - T[849-860] . - T[849-860] . - T[893-904] . - T[893-904] . - T[934-945] . - T[934-945] . - T[983-994] . - T[983-994] . - T[1209-1220] . - T[1209-1220] . - T[1252-1263] . - T[1252-1263] . - T[1289-1300] . - T[1289-1300] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[824-849] . |
| Pfam |
EGF-like_CS (IPR013032) - T[836-855] 6.7E-6 - T[916-940] 8.4E-5 - T[1274-1295] 0.0028 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[840-851] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[982-1162] 1.72E-30 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[998-1180] 35.998 |
| SMART |
Laminin_G (IPR001791) - T[1019-1154] 1.6E-30 |
| Pfam |
Laminin_G (IPR001791) - T[1027-1154] 3.1E-19 |
| ProSiteProfiles |
Cys_knot_C (IPR006207) - T[1307-1421] 10.799 |
| SMART |
Cys_knot_C (IPR006207) - T[1324-1421] 0.0042 |
| ProSitePatterns |
Cys_knot_C (IPR006207) - T[1384-1420] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 41.627 % | 1087 | 0 |
| SLIT3_HUMAN | 40.674 % | 1081 | 0 |
| SLIT2_HUMAN | 42.268 % | 1131 | 0 |