- Transcript 'Cisavi.CG.ENS81.R132...' >
- Transcript 'KH2012:KH.S1028.3.v1...' >
- Transcript 'KH2012:KH.L152.2.v1....' >
- Transcript 'Cisavi.CG.ENS81.R2.1...' >
- Transcript 'Boleac.CG.SB_v3.S339...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S339.g07974.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S339 [12,231 / 14,217]
>Boleac.CG.SB_v3.S339.g07974.01.p
MNNNNAGPTYPMASLYVGDLHFDATEAMLYEKFSQAGPVLSIRVCRDMITRRSLGYAYVN
FQQPADAERALDTMNFDPIKGHPIRIMWSQRDPGLRKSGVGNIFIKNLDKSIDNKALYDT
FSAFGNILSCKVSCDLNGSKGYGFVHFETEDSAQRAIEKVDGMLLNDKKVFVGKFISRSE
RHKMIGERMKHYTNVYVKNFGESLDDEKLKEMFEAFGSLKSAVVMKDQEGKSRGFGFAAF
DNHEDAAKAVNELNGKDIGGHEIYVGRAQKKSERMAEIRQRYERQKQEQIQRYQGVNLYV
KNLDDTIRDDSLREAFAAYGTITSAKVMTDGERSKGFGFVCFSAPDEATKAVTEMNGRIV
GTKPLYVALAQRKEDRKAHLATQYMHRMSNVGVRVAHPNHQIMGQSFQSGAPYYMAPLAG
AQNRYVPGPIIRTASRWPAAAPAAFPVQNIRTPHAGGPIRPMSTSVSARNGMQQQPHRID
MMQGRQQVYMQTNRPQGFKYNQNVRNPASIASGVNQQPHVQQQVEAAQPAVHVQGQEPLT
PSALAAAPPHEQKQMLGERLYPIIEAEHAALASKITGMLLEIDNSELLHMLESRDSLKAK
MEEAVAVLQAHQAKVAAASRQQVAPTQPTAQAVQNPNMAGVQQMGXVNGGVASAVAVGGQ
E
>Boleac.CG.SB_v3.S339.g07974.01.t
ATGAATAATAACAACGCTGGACCTACATACCCGATGGCTTCCCTCTATGTTGGAGATCTG
CATTTTGATGCGACTGAAGCAATGCTGTACGAAAAGTTTTCTCAAGCTGGACCCGTCTTG
TCGATCAGAGTCTGTCGTGACATGATTACCAGACGCTCACTTGGCTATGCTTATGTTAAC
TTCCAACAGCCTGCTGATGCCGAACGTGCTTTGGATACGATGAATTTCGATCCCATCAAG
GGACATCCTATCAGAATCATGTGGAGTCAACGTGATCCCGGTCTCAGAAAGTCTGGAGTT
GGCAACATCTTCATCAAGAACTTGGACAAGTCGATCGATAACAAGGCTCTCTATGATACC
TTTTCTGCTTTTGGTAACATCTTGTCCTGCAAGGTGTCCTGTGATTTGAATGGCTCGAAA
GGCTACGGCTTCGTGCATTTTGAGACTGAAGATTCTGCCCAACGTGCTATTGAAAAGGTC
GACGGCATGTTGCTCAATGACAAGAAGGTGTTTGTTGGTAAATTCATTTCACGATCTGAG
CGTCATAAGATGATTGGAGAACGCATGAAGCACTATACTAATGTGTACGTGAAGAATTTT
GGGGAAAGTCTTGACGATGAGAAATTGAAGGAGATGTTTGAAGCTTTTGGTTCGTTGAAA
AGTGCGGTAGTGATGAAAGATCAAGAGGGTAAATCTCGTGGGTTTGGCTTTGCCGCTTTC
GATAACCACGAAGATGCTGCTAAAGCTGTGAATGAGCTCAATGGGAAAGATATCGGTGGC
CATGAGATATATGTCGGACGTGCTCAAAAGAAATCTGAGAGAATGGCGGAGATTCGTCAG
CGTTACGAAAGGCAGAAGCAAGAGCAAATCCAGAGGTATCAAGGCGTTAACTTGTATGTC
AAAAATTTGGATGATACAATCCGCGATGATAGTTTGCGTGAAGCTTTTGCAGCTTACGGT
ACGATTACAAGTGCCAAAGTAATGACTGATGGTGAAAGATCCAAAGGATTTGGTTTTGTT
TGCTTCAGTGCTCCTGATGAAGCCACGAAAGCTGTAACAGAAATGAACGGCCGTATCGTG
GGTACCAAACCGTTGTATGTTGCCCTTGCACAAAGAAAGGAAGATCGTAAAGCGCATTTG
GCCACTCAGTATATGCATAGAATGTCTAACGTGGGTGTCCGTGTGGCTCATCCTAACCAC
CAAATAATGGGGCAGTCCTTCCAATCGGGCGCTCCATACTACATGGCTCCATTGGCTGGC
GCTCAAAATAGGTATGTTCCAGGTCCAATCATTCGCACTGCATCTAGATGGCCGGCTGCG
GCGCCAGCTGCTTTCCCTGTTCAAAACATCAGAACTCCTCATGCTGGAGGGCCAATCCGA
CCTATGAGCACATCTGTGTCTGCTAGGAATGGAATGCAACAACAGCCCCACCGTATTGAC
ATGATGCAAGGGCGTCAACAGGTCTACATGCAGACTAACCGACCACAAGGCTTCAAGTAC
AATCAAAATGTTCGCAATCCCGCCTCAATTGCATCTGGTGTCAACCAACAACCTCACGTA
CAGCAACAAGTTGAAGCGGCGCAGCCTGCTGTGCATGTCCAAGGTCAAGAACCACTCACA
CCGAGTGCGTTGGCTGCAGCGCCACCTCATGAGCAGAAACAGATGTTGGGTGAACGTCTT
TATCCTATCATCGAAGCTGAACATGCTGCTCTGGCATCTAAGATCACCGGAATGCTGCTT
GAAATCGACAACTCTGAATTGCTGCACATGTTGGAATCTCGCGACTCACTCAAGGCTAAG
ATGGAAGAAGCTGTTGCAGTACTTCAAGCTCATCAAGCTAAAGTTGCTGCTGCAAGCCGT
CAACAAGTTGCTCCAACACAGCCTACNGCTCAGGCTGTCCAAAATCCTAATATGGCTGGT
GTGCAACAAATGGGTCNGGTCAATGGAGGTGTAGCAAGCGCTGTAGCGGTAGGTGGTCAA
GAGTAA
Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-94] 4.9E-25 - T[95-181] 4.6E-23 - T[182-279] 1.3E-25 - T[280-384] 1.4E-26 |
SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[12-180] 2.38E-48 - T[193-376] 6.83E-48 |
ProSiteProfiles |
RRM_dom (IPR000504) - T[13-91] 17.046 - T[101-177] 16.551 - T[193-270] 19.655 - T[296-372] 18.223 |
TIGRFAM |
PABP_1234 (IPR006515) - T[13-609] 7.6E-229 |
SMART |
RRM_dom (IPR000504) - T[14-87] 9.1E-22 - T[102-173] 2.3E-22 - T[194-266] 9.1E-26 - T[297-368] 2.6E-23 |
Pfam |
RRM_dom (IPR000504) - T[15-85] 1.7E-19 - T[103-169] 4.3E-19 - T[195-263] 5.4E-22 - T[298-365] 1.7E-17 |
SMART |
RRM_dom_euk (IPR003954) - T[102-173] 2.2 - T[194-266] 1.3 - T[297-368] 3.9 |
SUPERFAMILY |
PABP-dom (IPR036053) - T[481-619] 1.83E-42 |
ProSiteProfiles |
PABP_HYD (IPR002004) - T[536-613] 21.092 |
Pfam |
PABP_HYD (IPR002004) - T[542-608] 2.7E-27 |
SMART |
PABP_HYD (IPR002004) - T[548-611] 2.6E-33 |
Protein Name | Identity | Bit Score | e-value |
---|---|---|---|
PABP1_HUMAN | 64.207 % | 798 | 0 |
PABP4_HUMAN | 61.111 % | 761 | 0 |
PABP3_HUMAN | 59.293 % | 729 | 0 |