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  1. Transcript 'Cisavi.CG.ENS81.R132...'
  2. Transcript 'KH2012:KH.S1028.3.v1...'
  3. Transcript 'KH2012:KH.L152.2.v1....'
  4. Transcript 'Cisavi.CG.ENS81.R2.1...'
  5. Transcript 'Boleac.CG.SB_v3.S339...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S339.g07974.01.t

Possible name(s)

PABPC1; PABPC3; PABPC4

Location

S339 [12,231 / 14,217]

Sequences

Amino acid sequence

Length: 661

>Boleac.CG.SB_v3.S339.g07974.01.p
MNNNNAGPTYPMASLYVGDLHFDATEAMLYEKFSQAGPVLSIRVCRDMITRRSLGYAYVN
FQQPADAERALDTMNFDPIKGHPIRIMWSQRDPGLRKSGVGNIFIKNLDKSIDNKALYDT
FSAFGNILSCKVSCDLNGSKGYGFVHFETEDSAQRAIEKVDGMLLNDKKVFVGKFISRSE
RHKMIGERMKHYTNVYVKNFGESLDDEKLKEMFEAFGSLKSAVVMKDQEGKSRGFGFAAF
DNHEDAAKAVNELNGKDIGGHEIYVGRAQKKSERMAEIRQRYERQKQEQIQRYQGVNLYV
KNLDDTIRDDSLREAFAAYGTITSAKVMTDGERSKGFGFVCFSAPDEATKAVTEMNGRIV
GTKPLYVALAQRKEDRKAHLATQYMHRMSNVGVRVAHPNHQIMGQSFQSGAPYYMAPLAG
AQNRYVPGPIIRTASRWPAAAPAAFPVQNIRTPHAGGPIRPMSTSVSARNGMQQQPHRID
MMQGRQQVYMQTNRPQGFKYNQNVRNPASIASGVNQQPHVQQQVEAAQPAVHVQGQEPLT
PSALAAAPPHEQKQMLGERLYPIIEAEHAALASKITGMLLEIDNSELLHMLESRDSLKAK
MEEAVAVLQAHQAKVAAASRQQVAPTQPTAQAVQNPNMAGVQQMGXVNGGVASAVAVGGQ
E

Nucleotide sequence

Length: 1,986

>Boleac.CG.SB_v3.S339.g07974.01.t
ATGAATAATAACAACGCTGGACCTACATACCCGATGGCTTCCCTCTATGTTGGAGATCTG
CATTTTGATGCGACTGAAGCAATGCTGTACGAAAAGTTTTCTCAAGCTGGACCCGTCTTG
TCGATCAGAGTCTGTCGTGACATGATTACCAGACGCTCACTTGGCTATGCTTATGTTAAC
TTCCAACAGCCTGCTGATGCCGAACGTGCTTTGGATACGATGAATTTCGATCCCATCAAG
GGACATCCTATCAGAATCATGTGGAGTCAACGTGATCCCGGTCTCAGAAAGTCTGGAGTT
GGCAACATCTTCATCAAGAACTTGGACAAGTCGATCGATAACAAGGCTCTCTATGATACC
TTTTCTGCTTTTGGTAACATCTTGTCCTGCAAGGTGTCCTGTGATTTGAATGGCTCGAAA
GGCTACGGCTTCGTGCATTTTGAGACTGAAGATTCTGCCCAACGTGCTATTGAAAAGGTC
GACGGCATGTTGCTCAATGACAAGAAGGTGTTTGTTGGTAAATTCATTTCACGATCTGAG
CGTCATAAGATGATTGGAGAACGCATGAAGCACTATACTAATGTGTACGTGAAGAATTTT
GGGGAAAGTCTTGACGATGAGAAATTGAAGGAGATGTTTGAAGCTTTTGGTTCGTTGAAA
AGTGCGGTAGTGATGAAAGATCAAGAGGGTAAATCTCGTGGGTTTGGCTTTGCCGCTTTC
GATAACCACGAAGATGCTGCTAAAGCTGTGAATGAGCTCAATGGGAAAGATATCGGTGGC
CATGAGATATATGTCGGACGTGCTCAAAAGAAATCTGAGAGAATGGCGGAGATTCGTCAG
CGTTACGAAAGGCAGAAGCAAGAGCAAATCCAGAGGTATCAAGGCGTTAACTTGTATGTC
AAAAATTTGGATGATACAATCCGCGATGATAGTTTGCGTGAAGCTTTTGCAGCTTACGGT
ACGATTACAAGTGCCAAAGTAATGACTGATGGTGAAAGATCCAAAGGATTTGGTTTTGTT
TGCTTCAGTGCTCCTGATGAAGCCACGAAAGCTGTAACAGAAATGAACGGCCGTATCGTG
GGTACCAAACCGTTGTATGTTGCCCTTGCACAAAGAAAGGAAGATCGTAAAGCGCATTTG
GCCACTCAGTATATGCATAGAATGTCTAACGTGGGTGTCCGTGTGGCTCATCCTAACCAC
CAAATAATGGGGCAGTCCTTCCAATCGGGCGCTCCATACTACATGGCTCCATTGGCTGGC
GCTCAAAATAGGTATGTTCCAGGTCCAATCATTCGCACTGCATCTAGATGGCCGGCTGCG
GCGCCAGCTGCTTTCCCTGTTCAAAACATCAGAACTCCTCATGCTGGAGGGCCAATCCGA
CCTATGAGCACATCTGTGTCTGCTAGGAATGGAATGCAACAACAGCCCCACCGTATTGAC
ATGATGCAAGGGCGTCAACAGGTCTACATGCAGACTAACCGACCACAAGGCTTCAAGTAC
AATCAAAATGTTCGCAATCCCGCCTCAATTGCATCTGGTGTCAACCAACAACCTCACGTA
CAGCAACAAGTTGAAGCGGCGCAGCCTGCTGTGCATGTCCAAGGTCAAGAACCACTCACA
CCGAGTGCGTTGGCTGCAGCGCCACCTCATGAGCAGAAACAGATGTTGGGTGAACGTCTT
TATCCTATCATCGAAGCTGAACATGCTGCTCTGGCATCTAAGATCACCGGAATGCTGCTT
GAAATCGACAACTCTGAATTGCTGCACATGTTGGAATCTCGCGACTCACTCAAGGCTAAG
ATGGAAGAAGCTGTTGCAGTACTTCAAGCTCATCAAGCTAAAGTTGCTGCTGCAAGCCGT
CAACAAGTTGCTCCAACACAGCCTACNGCTCAGGCTGTCCAAAATCCTAATATGGCTGGT
GTGCAACAAATGGGTCNGGTCAATGGAGGTGTAGCAAGCGCTGTAGCGGTAGGTGGTCAA
GAGTAA

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-94] 4.9E-25 - T[95-181] 4.6E-23 - T[182-279] 1.3E-25 - T[280-384] 1.4E-26
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[12-180] 2.38E-48 - T[193-376] 6.83E-48
ProSiteProfiles
RRM_dom (IPR000504) - T[13-91] 17.046 - T[101-177] 16.551 - T[193-270] 19.655 - T[296-372] 18.223
TIGRFAM
PABP_1234 (IPR006515) - T[13-609] 7.6E-229
SMART
RRM_dom (IPR000504) - T[14-87] 9.1E-22 - T[102-173] 2.3E-22 - T[194-266] 9.1E-26 - T[297-368] 2.6E-23
Pfam
RRM_dom (IPR000504) - T[15-85] 1.7E-19 - T[103-169] 4.3E-19 - T[195-263] 5.4E-22 - T[298-365] 1.7E-17
SMART
RRM_dom_euk (IPR003954) - T[102-173] 2.2 - T[194-266] 1.3 - T[297-368] 3.9
SUPERFAMILY
PABP-dom (IPR036053) - T[481-619] 1.83E-42
ProSiteProfiles
PABP_HYD (IPR002004) - T[536-613] 21.092
Pfam
PABP_HYD (IPR002004) - T[542-608] 2.7E-27
SMART
PABP_HYD (IPR002004) - T[548-611] 2.6E-33

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PABP1_HUMAN 64.207 % 798 0
PABP4_HUMAN 61.111 % 761 0
PABP3_HUMAN 59.293 % 729 0





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