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  1. Transcript 'Boleac.CG.SB_v3.S34....'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S34.g07990.01.t

Possible name(s)

MACF1; SYNE1; SYNE3

Gene model

Boleac.CG.SB_v3.S34.g07990

Location

S34 [39,068 / 43,776]

Sequences

Amino acid sequence

Length: 572

>Boleac.CG.SB_v3.S34.g07990.01.p
SLIQELEELQDSVDSLKARLNNLCRSYQSPEIDQLSKQVTASLQRYDNMKMKLAKLRTKC
EKNLLEAFHTSARDFDQWLKGKKELVQRYGDVSGNKKAAQQKXEQIQVLLRSVDEGKTKL
NILIGLGEELPNILRPESSENVRLQTKQCKEAWRNFLAMLQEKEQSLQSYVEQLTDFATS
VTELTKWLRDVEGRFQAETGLRATIGLKKSQFNSLQAIAEDVTDPNYKFERLKRKAHKLG
SSPELTQLNQLTAQYHTISKQVQDALKHSEQNLVDHQSYQTAFTEAQEWNHDFSHRLETY
SNLTGGKEMLEQRLHKLDTLLGGKQEGEVKTNIARGHSDKILPTTAAKGQPTIRTQVMEL
SQSWQENVSKAEAIRDQLRKCISAWEKYEEAVKSAQNWLQNTDVTVKAEKIVHEGQTLSP
EALCSDLDKCRSLYREIKNKGSMVENVQQCASNIATLTGDVSGTRVDLAEIREHYQELMN
AVQALLNEAEILAESAKTYHQALHVFTDWFSGKPVELFRLSDTSCNKEMLMENIKALEAL
QEETPEGDDKLKQAVSTGKRSSPDKSINLQLQ

Nucleotide sequence

Length: 1,716

>Boleac.CG.SB_v3.S34.g07990.01.t
AGTTTAATCCAAGAGCTCGAAGAACTGCAGGACTCTGTCGACTCTCTTAAAGCAAGATTG
AACAACTTGTGTCGATCGTACCAAAGTCCCGAGATTGATCAATTGTCCAAACAAGTAACT
GCTTCATTGCAGAGATATGACAATATGAAGATGAAACTTGCCAAACTTCGTACGAAATGC
GAAAAGAATCTTCTGGAAGCGTTCCACACATCTGCCAGGGATTTCGATCAATGGCTGAAA
GGGAAAAAGGAACTTGTGCAAAGATATGGTGATGTCTCTGGAAATAAGAAGGCAGCTCAG
CAGAAGTTNGAACAAATTCAGGTTCTCCTGCGAAGCGTTGATGAAGGAAAAACAAAGTTA
AACATCCTAATCGGTCTNGGAGAAGAACTTCCGAACATCCTGCGACCAGAAAGCAGTGAA
AATGTCCGCCTACAGACAAAGCAATGCAAGGAAGCTTGGAGAAATTTCCTGGCTATGCTC
CAGGAGAAGGAACAAAGTCTGCAAAGCTATGTGGAGCAACTCACAGATTTTGCTACCAGT
GTTACTGAACTCACAAAATGGTTGAGAGATGTTGAAGGCAGGTTCCAGGCGGAGACTGGG
CTTCGAGCCACCATAGGATTGAAGAAATCTCAATTCAACTCTTTACAAGCAATTGCAGAA
GACGTGACGGATCCAAACTACAAATTTGAGAGATTGAAAAGAAAAGCACACAAACTTGGA
AGTTCACCAGAATTGACTCAATTGAATCAACTCACCGCTCAGTATCACACAATATCCAAG
CAAGTACAGGATGCGTTGAAGCATAGCGAGCAGAATCTTGTTGATCATCAGTCGTATCAG
ACCGCGTTCACCGAAGCTCAAGAATGGAATCATGATTTCAGCCACAGACTCGAAACTTAT
TCAAACCTAACTGGAGGGAAAGAAATGCTGGAGCAGCGCCTTCATAAACTTGACACTCTT
CTCGGAGGCAAACAAGAAGGCGAAGTGAAGACTAATATTGCAAGAGGTCACTCTGACAAG
ATCCTTCCAACGACTGCTGCTAAAGGGCAGCCAACAATTCGGACTCAGGTCATGGAATTG
TCTCAGTCGTGGCAGGAGAATGTGTCAAAAGCAGAAGCAATCAGGGATCAACTGCGTAAA
TGCATCAGTGCTTGGGAGAAATACGAAGAAGCTGTCAAATCCGCTCAGAATTGGCTGCAG
AACACTGATGTCACTGTGAAAGCAGAGAAGATTGTCCATGAAGGACAGACGCTGAGCCCT
GAAGCTTTGTGTTCTGATTTGGACAAATGCCGTTCCTTGTACCGGGAGATCAAGAACAAA
GGCAGCATGGTCGAAAATGTGCAACAATGTGCCTCCAACATCGCTACTTTAACTGGTGAT
GTGTCTGGAACTCGGGTCGACTTGGCTGAAATTCGAGAACACTACCAAGAACTCATGAAT
GCTGTTCAAGCTCTTTTGAACGAGGCAGAGATCCTGGCCGAAAGTGCAAAGACATATCAC
CAAGCTCTACATGTCTTCACCGATTGGTTCTCGGGAAAACCTGTCGAATTGTTTCGACTT
TCCGATACTTCCTGCAATAAAGAAATGCTCATGGAGAACATTAAAGCACTTGAAGCTCTT
CAAGAGGAAACTCCAGAAGGAGATGACAAACTAAAGCAGGCTGTCTCTACAGGAAAACGA
AGCAGCCCTGACAAGAGCATCAATCTACAACTACAG

InterProScan

PANTHER
SYNE1 (IPR030265) - T[4-559] 5.4E-87
Pfam
Spectrin_repeat (IPR002017) - T[64-168] 7.3E-8
SMART
Spectrin/alpha-actinin (IPR018159) - T[66-168] 1.6E-6 - T[175-379] 8.3 - T[386-490] 1.3

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SYNE1_HUMAN 23.457 % 174 9.06E-46