- Transcript 'Boleac.CG.SB_v3.S351...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S351.g08205.01.t
Possible name(s)
LGR4; LGR5; LGR6
Gene model
Location
S351 [4,368 / 15,710]
Amino acid sequence
Length: 1,143
>Boleac.CG.SB_v3.S351.g08205.01.p
MGMNKITSIRNGDLDDLPLLKVLLLKHNLLIRIENHAFERLESIQIIDLSYXRLSSLPSA
IKGALKLRTLALKGNPITHVERTAFTGLQSLKELSLENVEQLSEFPDLSGCSQLRSLVLS
GGKLRGIPQEFCGNVPNLQKINLRHNRLTTIAGLQDCSNLYELDVSENEITVVEANQTRN
LTNIRSLNFGDNKISRLDEDVFSNMKHIEKLNLARNTFTYLPMQGLDSLRELNISGVRTM
LYLPPVELFLNLRSLAAYYPYHCCQVEKIHSKPADSAFLRHSDDIMASIDVGDIPMTSPV
QCSPSVGPMTPCDSLLPSTPIRVFWWTAVVLSFLLNGIIILACAIRFCARRISRRPTAVP
SDEEMLRRIDSDSRYSSENRVAVLDTDVANSHYCLNIGRNGTITSDNESFHATLCHLTLA
DIFVTVYTAMVLSYDHSTRGEFAVHGAWWQQSPLCHSAGFFLTFGTQLAFGTICVMTVER
YLAIIHPLQTERHMRKNMLIIALASVWVISIATGIVTLFGGIEYKDDDTSLNTLPAKRGA
TCLPWTTEFIYVTIMVSVHVIICVITCVLCGLMFCGKSKQSWLITRRGSRTQVVLTMAVN
ILFILPLALLAVFISGYLTYSDSSSSSGDYASQGDGYVLFDMGSILSFAMFAIPFRPLLN
PILFLIFNKPLRKDIAYVVKXALTTNSSNRTFQQSHSSILEPMFDSDMNSVVQSGLTTNY
PIINRVYNNEEIMRPSLAYDNRGIVSSSSXSYHAPSLSLGNSSSNRPGGNKGSNSERKRR
KRYTRSQRSERIATDTDPTTESEVITFHKGGHAVYYNPDSRERWRKKLSVRYGGISARDE
FQSLVFPRHHQSSSEQETNSTIYPIMPSTISALTRSSCARHPSINESCKNLSCDADASDV
SSVDYSCARYQYHDHVDSTNIKAHYNTCEQSAMMVDPREEYTSDSDAYDADKEIALITSF
MMXDCKAQSPVVEDSNTVKRLHCDHSRNPNNCTRQCDNETDLIPPCSVDIRDHKRLVFQP
DAAFLRRTSHTSTNNVEAHLSKKFGNSCEYCDSSTSKDSGIHSEIDSTSGASYSDTSMSR
RLHYSTGNSAMKSLAENAVSRHYDISSHNICVISSMDNSGTITSSPSNNTETISRDASSN
TLT
Nucleotide sequence
Length: 4,241
>Boleac.CG.SB_v3.S351.g08205.01.t
CATTTCGTCCATATCCTCAAATGCATTTGCGAGACTTGAAAAATTGGAACACGTTTGGCT
TGATGACAACGAGTTGAGTGAAATACCAGCCCGAGCTTTCAAGAAAACACCCGCAATAAA
AGCTCTGAACATGGGAATGAATAAGATCACATCAATACGAAATGGTGACCTGGACGACCT
ACCTTTACTGAAAGTTCTATTGCTAAAGCACAACCTTCTGATAAGAATCGAAAACCACGC
ATTTGAACGACTGGAGAGCATTCAGATTATTGACTTGTCCTACAANCGATTGTCTTCGCT
TCCATCTGCGATTAAAGGNGCACTCAAACTTCGAACTTTGGCACTCAAAGGCAATCCAAT
TACGCATGTCGAAAGAACTGCCTTCACTGGGTTGCAGAGTCTTAAAGAATTATCGTTGGA
GAATGTGGAACAATTGTCAGAATTTCCTGATCTGTCTGGTTGCAGCCAACTTAGATCATT
AGTGTTGTCGGGAGGAAAGCTTCGTGGGATTCCACAAGAATTTTGTGGCAACGTTCCTAA
TCTACAGAAGATAAACTTGAGACATAACCGTCTGACAACAATCGCTGGATTGCAAGATTG
TTCAAACTTGTATGAACTCGATGTCTCGGAAAATGAAATAACAGTTGTTGAAGCAAACCA
AACAAGAAACCTGACCAACATTAGATCCTTAAATTTTGGTGACAATAAAATCAGCAGACT
GGATGAAGACGTCTTCTCAAATATGAAGCATATTGAAAAATTAAATTTGGCAAGAAACAC
TTTTACCTACCTTCCAATGCAAGGACTTGACAGCCTTCGTGAACTCAATATTAGCGGCGT
ACGAACCATGTTGTATCTACCTCCGGTTGAATTGTTCCTCAATTTGCGAAGTTTGGCTGC
CTACTACCCCTACCACTGTTGTCAAGTTGAAAAAATTCATAGCAAGCCTGCTGATTCTGC
ATTCCTTCGACACTCCGACGATATCATGGCATCAATTGACGTGGGAGATATCCCGATGAC
GTCACCGGTTCAATGTTCTCCAAGTGTAGGTCCGATGACACCGTGTGATAGTTTACTCCC
TTCAACACCGATCAGGGTGTTTTGGTGGACGGCGGTGGTACTATCGTTTCTGCTCAATGG
AATTATCATTCTGGCTTGCGCAATCAGATTTTGTGCTCGGAGAATATCACGAAGACCTAC
AGCTGTGCCTTCCGATGAAGAAATGTTACGAAGAATAGATTCGGACTCACGTTATTCATC
AGAAAATAGAGTCGCTGTGCTAGATACAGACGTGGCAAACTCTCATTATTGTCTCAATAT
TGGCAGAAATGGAACAATAACTTCAGATAATGAATCATTCCATGCGACACTCTGTCATCT
TACATTGGCGGATATCTTTGTAACTGTTTATACTGCGATGGTGTTATCTTACGATCATTC
TACAAGAGGAGAGTTTGCTGTGCATGGAGCATGGTGGCAACAATCACCTTTGTGTCATTC
AGCTGGATTTTTCTTAACGTTCGGCACCCAATTGGCATTCGGCACTATCTGCGTGATGAC
TGTTGAGAGATATTTGGCGATCATACACCCTTTACAAACGGAAAGACACATGCGGAAAAA
TATGCTGATCATAGCTTTGGCTTCGGTGTGGGTGATTTCAATAGCAACAGGCATTGTTAC
TCTATTTGGTGGGATTGAATATAAAGACGATGACACATCGTTGAATACGCTGCCAGCCAA
ACGAGGAGCAACATGTCTTCCTTGGACAACAGAATTCATCTACGTTACTATCATGGTGTC
GGTGCATGTCATAATATGTGTGATCACTTGCGTGCTATGCGGTCTCATGTTCTGCGGGAA
GAGTAAACAATCATGGTTAATTACGAGGCGTGGTTCAAGAACGCAGGTTGTATTGACTAT
GGCTGTTAACATTTTATTTATTCTTCCCTTAGCCTTGTTGGCAGTGTTCATATCTGGATA
CTTGACATATTCTGACTCGAGTTCAAGTTCAGGAGACTATGCGAGTCAGGGTGACGGATA
CGTGTTGTTCGATATGGGAAGCATTTTATCATTTGCAATGTTTGCCATCCCTTTCCGTCC
GTTACTAAATCCGATCCTGTTTCTGATTTTCAACAAGCCATTGCGAAAGGATATTGCTTA
CGTTGTGAAAAANGCNTTAACCACAAATTCCAGCAATCGGACATTTCAGCAAAGTCATAG
TAGCATTCTTGAACCCATGTTTGACTCTGACATGAATAGTGTCGTGCAATCTGGATTAAC
AACCAATTATCCAATAATCAATCGTGTTTACAACAACGAAGAAATCATGAGACCATCTCT
TGCCTATGATAACAGAGGTATTGTATCATCGAGTTCANTGAGCTACCATGCTCCCAGTCT
ATCCTTAGGCAACTCCAGTAGTAATCGACCTGGCGGAAATAAAGGTTCAAATTCTGAACG
CAAGCGGCGTAAAAGATACACAAGATCGCAACGGAGTGAAAGAATCGCAACTGATACAGA
TCCTACCACTGAAAGCGAAGTCATTACTTTCCACAAAGGCGGCCATGCTGTGTATTACAA
TCCAGACAGTAGAGAACGTTGGAGAAAGAAATTAAGCGTTCGATACGGTGGGATAAGTGC
AAGGGATGAATTTCAGAGTCTTGTTTTTCCCCGTCATCATCAATCTTCATCAGAACAAGA
AACTAATTCGACAATATATCCAATAATGCCATCGACTATCAGTGCGTTGACAAGGTCATC
ATGTGCGAGACATCCAAGCATCAACGAATCGTGTAAAAATTTATCATGCGATGCAGACGC
TTCCGATGTATCATCTGTTGATTATTCATGTGCAAGATATCAATATCACGATCACGTCGA
CTCTACAAACATAAAAGCGCACTATAACACCTGCGAACAGTCGGCTATGATGGTAGATCC
ACGAGAAGAGTACACAAGTGATTCAGATGCATATGATGCTGATAAAGAAATCGCTCTTAT
TACATCTTTTATGATGNCCGATTGCAAGGCTCAAAGCCCCGTTGTCGAGGATAGTAACAC
CGTAAAAAGACTTCATTGTGATCATTCACGAAACCCGAATAATTGTACTCGACAGTGCGA
CAACGAGACAGACTTGATACCGCCATGTAGCGTGGACATTCGAGATCATAAGCGTCTGGT
ATTTCAGCCAGACGCGGCGTTTTTGCGACGAACGTCTCACACGTCAACAAATAATGTTGA
AGCGCATTTAAGTAAAAAGTTTGGGAATTCATGCGAATATTGTGATTCGTCCACTTCAAA
AGACTCTGGTATTCATTCCGAAATAGACTCAACGAGCGGGGCGTCCTATTCTGACACGAG
TATGAGCCGTCGATTACATTATTCGACCGGTAATTCTGCTATGAAATCATTAGCAGAAAA
CGCCGTTTCCAGACATTACGATATTTCCTCTCATAATATATGTGTTATTTCTAGTATGGA
TAATTCTGGTACGATAACGTCAAGTCCATCAAATAACACAGAGACAATATCGAGGGATGC
TAGTTCAAACACGTTGACATAATACAGTAATGGGGCCTAGGTGTTAACATAAATTTATAT
AATCTTCATTACATCAGCATCAATGGGCCTGTCCAGACATCGCACATTTTCTTTTGCGCA
ATTTCGTAAGTGAAATGCATTTCCTAGTTCCAATGTTATGGCGGGGGATATAGCCAGGTT
GAGGTCAGTGAAGTTGAGATGTGGTGAAAGTTTTACACGCCCGAAAAACACACGCTCACG
CCTACTCATAAGAGTGTCCCAATTTAAAGTAACCATTTGCAATTTAGCAATTTCGATGCA
ATCTTCAATTTGCTATTTCAAGTTGTGGGATTAAAGTAGAGTAAAACTAAGCAATCGGGC
AAACTCCTTTTGCATTGCTTGCGAAAAATTGACTCATTTTTCTGCAAAATTACGACTTGC
GTTTTTATATGTTCAAGTTACCTTTTACCATTGTCTTGTATCGTCAACTCTTGTTCAAAC
CATTATATATTTTGTATGTTATATATCGTACCATTTCACTGCCCATAATGCATTTTTTGA
TTCTCTGCTCGGATTAAGTCCAATATTTTAAACATGACCGTGATTGTAGTCATTTCAATA
TGATAAATGAATTGAAGGAATATGGCAGTCTGAGCAGAGCCTTTTTGAACACACGGACTT
ACGCTACCCTGTTACGTTACATAGTTACATCCAGATATAGG
| Gene3D |
LRR_dom_sf (IPR032675) - T[1-65] 3.8E-9 - T[66-322] 8.1E-50 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[4-53] 2.9E-7 - T[66-121] 3.0E-8 - T[158-216] 2.1E-11 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[17-40] 14.0 - T[41-63] 160.0 - T[66-87] 48.0 - T[111-134] 380.0 - T[135-157] 33.0 - T[181-204] 0.15 - T[205-228] 130.0 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[19-40] 6.018 - T[43-64] 4.87 - T[66-87] 6.226 - T[90-112] 5.617 - T[113-134] 4.755 - T[137-158] 8.521 - T[159-180] 6.087 - T[183-204] 6.495 - T[207-230] 4.901 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[389-664] 18.065 |
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[410-431] 2.8E-7 - T[462-484] 2.8E-7 - T[498-519] 2.8E-7 - T[595-618] 2.8E-7 - T[646-672] 2.8E-7 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[410-791] 1.6E-15 |
| ProSitePatterns |
GPCR_Rhodpsn (IPR000276) - T[468-484] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LGR6_HUMAN | 28.426 % | 163 | 6.17E-41 |
| LGR5_HUMAN | 23.634 % | 190 | 1.45E-49 |
| LGR4_HUMAN | 27.513 % | 153 | 7.86E-38 |