- Transcript 'KH2012:KH.L4.23.v1.R...' >
- Clone 'cima860864' >
- Transcript 'KH2012:KH.L41.47.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'Boleac.CG.SB_v3.S352...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S352.g08222.01.t
Possible name(s)
NR1H2; NR1H4; NR1I3
Gene model
Location
S352 [106,945 / 121,600]
Amino acid sequence
Length: 679
>Boleac.CG.SB_v3.S352.g08222.01.p
MTNAPKTYLSSLLQIYDGMTSQFIPSPVAACSHYDRPGIIVSTSPTNEFPAINPMPAPSS
SPCQECAIHNTIIQSMAFNMHSIDYGNGHHLRANSPCSSCALKTNFQQSQQHPALWDRHF
YSQPIYQTHCGHNLAENYVQYSSPTQQNTQLMSPNENSMSSLPQVWPSSSVVHDQKFLSV
PGVLPTAETPNTNSIPFSNHPPMEQQCHGNEIEGLSHSYKSLQSDYSKNSVVERNDFQRN
VPSQKSGSITESQSHSSAVDQLNNLSSMKIYELDIKPDCIVEEPISTQKPTPKSSPKGKK
RSATDKRISETRKRQPEDLCAVCGDRASGYHYNALTCEGCKGFFRRSITNKSSYKQGCKH
GGNCEMDTYTRRKCPHCRFKKCKEVGMLEECLLTEIQCRSKRIRRQQKKLQQTEEDSSKS
EETSANVTSPEHSSVASSPSGSDGSQNGDSSSSLAFSEEEVKLIDAVNEAFKKYKINPEI
VRRWEEYINKESKTTCRLSDITTVHVQVLVEYAKNIPGFLSLEYADQIALLKGSIFEAML
IRNSCGYHHLRRDINKSAILEEIGIEEKRLEALLDFFKSIGKLGMDEIEYGLLIAIVIFN
SDYDFVKSKDIVDEYQDLYLSALAKYSITRMPVRTAIFARILAMLTEIRSLSYNNAEIVA
SWKKRGALTPLLCEIWDLE
Nucleotide sequence
Length: 2,040
>Boleac.CG.SB_v3.S352.g08222.01.t
ATGACAAACGCGCCGAAGACATATCTGAGTTCTTTATTGCAAATATATGACGGAATGACA
AGTCAGTTTATTCCATCACCTGTCGCAGCATGCTCCCATTATGATCGACCAGGCATAATC
GTTTCAACGTCCCCAACGAATGAGTTTCCAGCAATCAACCCGATGCCTGCTCCTTCAAGC
TCTCCTTGTCAGGAATGTGCTATACACAACACAATCATTCAATCAATGGCATTTAATATG
CATAGCATTGACTATGGAAATGGACATCATCTTCGAGCTAACTCGCCGTGTTCGTCATGC
GCTTTGAAGACAAATTTTCAACAATCGCAACAGCATCCTGCTTTATGGGACAGACATTTT
TATTCCCAACCTATTTATCAGACACACTGCGGCCACAATTTGGCTGAGAATTACGTTCAA
TATTCTTCTCCCACACAGCAAAATACACAATTAATGTCGCCTAATGAGAACAGCATGAGC
AGTCTTCCCCAAGTTTGGCCTAGTAGTAGTGTTGTTCACGATCAAAAGTTTTTATCTGTC
CCGGGTGTCCTTCCAACGGCTGAAACACCAAACACGAATTCTATACCGTTTTCAAACCAC
CCGCCAATGGAGCAACAATGTCACGGAAACGAAATAGAAGGACTTTCTCACTCGTACAAA
TCATTACAGTCGGACTACAGCAAAAATTCCGTGGTCGAACGGAACGATTTTCAGCGAAAT
GTCCCATCTCAGAAGAGTGGCTCAATAACTGAGTCCCAATCGCACAGTTCTGCTGTCGAT
CAACTAAATAATTTATCAAGTATGAAGATTTACGAACTGGATATTAAGCCGGATTGTATT
GTTGAAGAACCAATATCGACCCAGAAACCAACTCCTAAATCATCTCCTAAAGGAAAAAAG
AGATCCGCAACGGATAAACGAATATCTGAGACACGAAAAAGACAACCAGAAGATTTATGT
GCAGTGTGCGGCGACAGAGCATCAGGATATCACTACAACGCGTTGACATGTGAAGGTTGC
AAAGGTTTCTTCAGAAGGTCCATCACAAACAAATCGTCATACAAACAAGGGTGCAAGCAT
GGCGGAAATTGTGAAATGGATACGTACACGAGAAGAAAATGCCCGCATTGCAGGTTCAAA
AAGTGTAAAGAGGTCGGAATGCTTGAAGAATGTCTTCTCACGGAAATCCAATGTCGTTCG
AAACGCATTAGAAGGCAGCAAAAGAAATTGCAACAAACGGAAGAAGACAGTTCCAAGTCT
GAAGAAACCTCAGCGAATGTGACGTCGCCGGAACATTCTTCCGTTGCTTCATCCCCAAGC
GGATCCGATGGCTCGCAGAACGGCGATAGTTCGAGCTCCCTTGCATTTTCTGAAGAAGAG
GTCAAGTTGATCGACGCCGTAAATGAAGCTTTTAAAAAGTACAAGATTAACCCGGAGATT
GTAAGGAGATGGGAGGAATACATCAACAAAGAATCCAAAACCACATGTCGATTGTCAGAC
ATAACAACAGTTCATGTTCAAGTGCTGGTCGAGTACGCAAAGAACATACCAGGTTTCTTA
TCGCTTGAATACGCGGATCAAATTGCACTTTTGAAAGGAAGCATTTTTGAAGCGATGCTC
ATCCGAAACTCATGTGGCTATCACCATCTCAGACGGGATATTAACAAATCTGCGATCCTT
GAAGAAATAGGTATAGAAGAAAAACGACTCGAAGCATTACTCGATTTCTTCAAATCGATA
GGTAAACTTGGTATGGATGAAATCGAGTACGGTCTGCTGATAGCAATAGTCATCTTCAAT
TCAGATTACGATTTTGTGAAGAGCAAAGACATTGTTGATGAATACCAAGACCTGTATCTG
AGTGCCTTAGCGAAATACAGCATAACACGGATGCCAGTGAGGACCGCTATATTTGCACGA
ATTTTGGCAATGCTGACGGAAATCCGGTCTCTTAGTTATAATAATGCTGAAATCGTGGCT
TCTTGGAAAAAGAGAGGCGCTCTCACCCCACTGCTTTGCGAAATATGGGATTTGGAATGA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[304-396] 1.2E-28 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[317-390] 2.0E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[317-394] 18.665 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[319-387] 1.6E-26 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[320-346] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[320-336] 4.2E-17 - T[336-351] 4.2E-17 - T[371-379] 4.2E-17 - T[379-387] 4.2E-17 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[383-393] 2.1E-20 - T[501-522] 2.1E-20 - T[522-538] 2.1E-20 - T[583-598] 2.1E-20 - T[640-657] 2.1E-20 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[457-677] 1.21E-45 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[498-657] 1.3E-17 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[500-652] 7.3E-25 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 34.474 % | 214 | 1.29E-62 |
| NR1H2_HUMAN | 33.333 % | 219 | 2.77E-64 |
| NR1H4_HUMAN | 38.182 % | 279 | 1.65E-86 |