Aniseed - Transcript Card

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S392.g08947.01.t

Possible name(s)

SDE2; SF3A3

Gene model

Boleac.CG.SB_v3.S392.g08947

Location

S392 [75,453 / 76,959]

Sequences

Amino acid sequence

Length: 501

>Boleac.CG.SB_v3.S392.g08947.01.p
METILEQQRRLHEEKDRLYEAMTXESGYKKSSTREQINSDHRMRYLLDRLMDNSLRLQNM
YEDKDGLRKREIQAIASPNEFGEFYKRLKEIKDFHKIHPNEIFVPMSMEFEEMNKARDAT
SDETTILAEFTDEESYGRFLDLHEPYMSYINLKGIEKMSYVRYLXSFDRMFEIPREHKNA
QYREYLDGLMQYLVSFIERIKPLSDLNSEYEEIMKKFEEQWEXSEFPGWGKEAGSAMAHS
GAHLDLXAFTSSEELSSLGLDRLKSALMALDLKCGGTLEQRAKRLFSTKGKSMEEIEAXL
XAKNKRNKMXNRDIERSKETAAVEAWIYYLVELLSEQRAATKDXVQRRQARTGNERDEDE
EDVASDSDSGDEEGEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNQIYRGPK
AFQRHXSEWRHAHGMRCLGIPNTAHFANVTKIEDAMALWSKIKEMKNAERWNPDHEEEYE
DTAGNVVSKKTYEDLKRQGLL

Nucleotide sequence

Length: 1,506

>Boleac.CG.SB_v3.S392.g08947.01.t
ATGGAGACAATATTAGAGCAACAGCGTCGTCTGCACGAAGAGAAAGACCGGCTGTATGAA
GCCATGACTAANGAAAGTGGTTACAAGAAGTCGTCAACTCGTGAGCAAATTAACTCAGAT
CACAGAATGAGATATTTACTCGATAGACTCATGGATAATTCCTTACGCCTGCAAAATATG
TACGAGGATAAAGACGGTTTGCGNAAGCGTGAGATTCAAGCAATTGCCAGCCCCAATGAG
TTTGGGGAATTCTACAAGCGACTGAAAGAAATAAAAGACTTTCACAAAATTCATCCAAAT
GAAATATTTGTGCCGATGTCAATGGAATTTGAAGAAATGAATAAGGCTCGTGATGCCACA
TCAGACGAAACTACAATACTGGCTGAATTCACCGATGAGGAATCTTATGGTAGGTTTCTG
GATCTTCACGAACCATACATGAGTTACATTAACCTGAAAGGTATTGAGAAAATGAGCTAT
GTCCGTTACTTGGANAGTTTCGACAGGATGTTTGAAATACCGAGGGAACACAAAAATGCC
CAATATCGAGAATATCTTGATGGTTTAATGCAGTACTTGGTCTCATTCATAGAGCGCATC
AAACCTTTATCTGATCTAAATTCGGAATATGAAGAAATAATGAAAAAATTTGAGGAACAG
TGGGAGGNGAGTGAATTCCCAGGTTGGGGAAAAGAAGCTGGCAGTGCAATGGCTCATTCT
GGAGCTCATCTTGACCTGAGNGCTTTTACATCATCGGAGGAACTATCATCACTTGGATTG
GATCGTTTGAAGTCTGCGTTGATGGCATTGGATTTGAAATGTGGAGGTACTCTTGAACAA
AGAGCTAAAAGACTATTCAGCACAAAAGGAAAATCAATGGAAGAGATTGAGGCTGNCTTA
TTNGCTAAAAATAAACGAAACAAAATGTNAAATCGAGATATTGAAAGATCGAAAGAAACC
GCTGCTGTNGAAGCTTGGATTTACTACCTAGTTGAACTCCTGAGTGAACAACGAGCTGCT
ACAAAAGATAANGTTCAGCGAAGACAAGCTCGAACTGGCAATGAACGAGATGAAGATGAA
GAAGATGTGGCGTCAGACAGTGATTCAGGAGATGAAGAAGGGGAAATCATATACAACCCT
AAAAATCTTCCTCTTGGTTGGGACGGAAAACCCATTCCATATTGGTTGTATAAACTTCAC
GGTTTGAATATCAATTACAATTGTGAAATATGTGGAAATCAAATTTACCGTGGTCCAAAG
GCATTCCAGCGTCATTTNTCAGAATGGCGTCATGCACACGGTATGAGATGTTTAGGGATA
CCGAACACTGCCCATTTTGCAAATGTCACCAAAATTGAAGACGCCATGGCATTGTGGTCA
AAAATCAAAGAAATGAAAAATGCCGAACGGTGGAATCCAGACCATGAAGAAGAATATGAA
GACACAGCAGGAAACGTTGTCTCAAAGAAAACATATGAGGATTTGAAGCGACAAGGACTA
CTGTAG

InterProScan

PANTHER	SF3A3 (IPR031776) - T[1-501] 1.5E-175
Pfam	SF3a60_bindingd (IPR021966) - T[74-100] 8.2E-12
Pfam	SF3A3_dom (IPR031774) - T[129-206] 6.3E-24
Pfam	DUF3449 (IPR024598) - T[324-500] 1.3E-73
ProSiteProfiles	Matrin/U1-C_Znf_C2H2 (IPR000690) - T[406-437] 9.036

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SF3A3_HUMAN	66.467 %	672	0