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TRANSCRIPT CARD

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  1. Molecular Tool 'Harore-Otx-MO | HrothMO1 (Wada 2002)' > 
  2. Transcript 'Moocci.CG.ELv1_2.S54...' > 
  3. Transcript 'Boleac.CG.SB_v3.S454...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S454.g10042.01.t

Possible name(s)

CDH23; PCDH11Y; PCDHB1

Gene model

Boleac.CG.SB_v3.S454.g10042

Location

S454 [24,062 / 43,841]

Sequences

Amino acid sequence

Length: 200

>Boleac.CG.SB_v3.S454.g10042.01.p
MEFIALIRQLCFIFCLTQWKECTADSADEACFVDPSAIITSDDMFEVYNFAAEEGILLEP
RKLLGTSIPILVVINVTDINDNTPIFDQXSLTTTIRNNTATGLIVGHIKAEDADIGQNAD
LRYDIQFPTERRGDANASSFLPSVLVQRTTGIVVLVRSVEDLKPPSKLTFSVVVKDNGDK
HRRSCRPEDALTRILINLYK

Nucleotide sequence

Length: 2,164

>Boleac.CG.SB_v3.S454.g10042.01.t
AGCACGATTGCCTGCGTCTAAATCCATCATAGTCGAGGTTGTGCGTGAGGCCATGGAAGG
NNTATGTTATCTCTGCTTCCTTGTAGTAAGTTCAAGGCTATGTAACTAGATGTAGGTAGT
ACTGTTGGGATAGAACGAAGAAAACGAACGTTTGGATGGAATTTATTGCCCTGATACGTC
AACTGTGCTTCATATTTTGCTTGACGCAATGGAAAGAATGTACAGCTGACTCTGCAGACG
AAGCATGTTTCGTTGATCCGTCCGCAATAATCACCTCAGATGACATGTTTGAGGTTTATA
ATTTTGCAGCTGAAGAAGGCATTTTGTTAGAACCAAGAAAGTTGCTGGGCACTAGCATTC
CCATTTTGGTTGTCATAAACGTGACAGATATCAACGACAATACTCCTATATTTGACCAAN
GCAGCCTTACAACGACTATACGAAACAACACAGCGACAGGTTTGATTGTCGGTCATATCA
AGGCTGAAGACGCTGATATTGGACAGAACGCTGATCTGCGATATGACATTCAGTTCCCTA
CTGAAAGGAGGGGAGATGCTAACGCGAGCTCCTTCCTGCCATCTGTTCTGGTTCAACGGA
CCACTGGAATTGTGGTACTTGTCAGATCCGTCGAAGATCTCAAGCCACCGTCGAAACTGA
CATTCTCTGTTGTGGTGAAAGACAACGGGGATAAGCACAGACGCTCGTGTCGGCCTGAGG
ACGCATTGACAAGAATTCTCATCAATCTCTACAAATAGTTCTATTTGAATTATGTGGCAT
CATGCAAAGCGGATGCAAGATGTAGTCCCAAGCACTTCTATTCTTCATCTTGTATAATGA
TATTCACGTAATCCAGCTTACAATACTTGATGTCATCAATATGTATTCGTAGATTCGCAC
AGACCTTGAGTTTATCGAAGCGCTAAACATGAATGGCAATGTTGACTTCACGTCCCTTGC
CTGAACCACAATACCGCAATCAGGAATCGTAGATCATGAGACTTCAATGAGTAGAATGTA
GCCTATACTTACTGAGCATTGCCTCCATGTTTTATGCGTCTAATGTGATCTAATGAGTCT
TCCTCGTTGTTTTTTCAAAGACGAAAACGTCCAACTATTTTATGACGAGCATCTCAGGAT
ATAATCGACCTAAGCGTCGCATGCGCCACGATTTCTCCACGTATTTGGAAGAAATTAAAC
ATCTTTTAGTAATAAACATCGCCATCATTTGGGAAAGAAAATATTGATATCTTTCCTTCA
AAATGCAATTTTAAAGCTCGAATTCAGTATCACCATGCGCTCCGAATTGCCGGTGACCTC
CCGGAGAACCCCTCCGTTTACCCTCAGTTTTCGGTTTTTATCACATCTTATACTGTATGC
CTCATTTATTGACTTCATATTTACCTTTACTCGGATCGCCCCTTTTTTCGTGATAAGACC
TATGTCGGCCACAGTCGTGTTGGCAAATGTGTCATGCATGCAGTGTGAAACCCATCTCTT
TATTTTTCAATATCATTAGCCTCTGCAGTATTCGTATGGTTGTAGGAGAAAATTTCGTCC
CCCACATTTGAAAACATGAATTTCATAATGTAGCCTACTGCACCACGTAAGAACGATATC
AAGATTTACACTGCACCCAGATTCCTATCTCAACCATTAAGTGGTAGAAGGAAAATGGAG
ATTATTTTTCGCCAACACTTACACAAATGAAATGCAAAGGAAACCACGGGTAATTCAGAC
CGAGTCGCGTTTGAGCTGAACAAAATTTGAAACTCGGTGAAAGCAAGACAAGGTCCGAAG
ACCTCATGTCGGAATAAACGGACCTCGGTGAAACCATCGATGCACGCCGACCACTTTCGG
CTCAAATTTGAACTCAATCCGGGTATAGCGTCTTGGAATACGGCGGTATTCATATTTTCG
TCTGTTCTAGATTGCAATTTTTCGCCATATATGTGTATATGCGATCGCACTTCGTCCGGG
TTTTTCTTGTATATTGTATTACGGATGATTTCGTGTATGTTACTGACGATAGCCGACTCG
GCGAGTCATCGTGTCACCTCACAGGAAAGCGAATTTAAGTCGCTGTTATTATAATCTGTT
TAGTGTTGTAATAATTTGTCGTTTTTTTCGATTAAAAAAACATCCCTGTTTTAAACATTA
AAAT

InterProScan

PRINTS
Cadherin (IPR002126) - T[65-84] 5.0E-5 - T[84-97] 5.0E-5 - T[166-183] 5.0E-5
SUPERFAMILY
Cadherin-like (IPR015919) - T[74-184] 8.86E-16
ProSitePatterns
Cadherin_CS (IPR020894) - T[74-84] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value