- Transcript 'KH2012:KH.C5.444.v2....' >
- Transcript 'KH2012:KH.L171.18.v1...' >
- Transcript 'KH2012:KH.C9.386.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S17...' >
- Transcript 'Boleac.CG.SB_v3.S457...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S457.g10082.01.t
Possible name(s)
COL21A1; ITGAL; MATN4
Gene model
Location
S457 [91,579 / 108,023]
Amino acid sequence
Length: 1,207
>Boleac.CG.SB_v3.S457.g10082.01.p
MNTCVWILLFITSFGIGYSDAFNIEIAPVARRSFKKGTVQNSDKSDNNGQTFFGQTFSGN
VIQLNREKYVTFMVSAPGELTEEDVKLTTGGRRVGNSVRSGAAGSTNTSGVLYMCDMPTQ
SFALNENSTNGLKFNCTEKNPFTREFLAQDYGRHDTLGISLTADPRANQSARVHLPSEVM
LACAHLRSYNCSNTLNAEGTCYLSKVGPGRGDAGHLEAQWRKKTPCVSECTKKMIDLIFL
IDGSQSITNISFELIKDWIINIASGFNISDDVHVGVVQFSHYYPKRRLSRQPYMKTEIEL
GEFKNIANFRKAVQQINYHGFTTYTAHAIEKVVRFDFGGSRSRYPTASRILILLTDGESS
DHDYLNEAVNIARSNRVVSFAVGVGQYDVDELKLIAGNDDRVITVTTFTELQQIVQQMQR
GIQSIEGSTASTANNGLNQCQAGISSCISKNTNGYAQLANNMTFFGYSLQGNVIEREGRK
IISVIVGAPLQIVDDYTSTAPPEEGGERVPTPLGLRSSSSSRSRALKATESSGVLYACDM
LVDGFTLEENATAGFFYNCTNKEKVDRNLEGPDISSHDTLGATLVSDKRPNSPITALLPK
DYMLTCAPLRAYNCSSNYKAEGTCYLSKVVPGRGDGRYSVSWSKRSPCREVQVGVVQYSH
WYQDEDQRHQPYLKTEIALGTHKNQRDFATAVKKIKFHGFTTYTAHAITKVVRDDFNGTN
SRYPLARRVMILLTDGNSTDRDDLDAAVAYSRDNDVTSFAVGVKGYQLEELLLIAGSKSR
VITVQNFNELQGIVEQIQFGIQLLEGSSNPNTTNGLMQCQAGISSDMSQAVHKDGRCVHR
TCEKRHPQKQRPEHKQYQSKKTPLVVKFMVNHVWDASSEIDFNIEVKYGCNISRTHPEVG
SSCAKAAQMNFPVSSRNLTSYGSTSVTIRDDANNGLILVCRPQSEQICDSQSFAPGACXL
TTVNTTLSPQNHRMTSTRKWTEMSPCLQRCIPTQVDLAFVVDGSSSVTKDNFERVLNWMQ
EISSNFDVSGQYKIAVVKYSRPMRTRVEIQLGQYTAQSTLSQAISNIKYAPGGSYASYAI
NMTVKNVFMSEQGRYPHARRVMIFLTDGKSTDSSSKLKVTTDYSRANDVEAFAVGIADYR
MNELLMVAGNSSRIFTEENYENLSXTISKIKTKIRQXEGGNTLSQSLQNPGLDHCGIGSS
VSLSGKE
Nucleotide sequence
Length: 3,621
>Boleac.CG.SB_v3.S457.g10082.01.t
ATGAATACGTGTGTTTGGATTCTATTGTTCATTACGTCTTTTGGAATTGGCTATTCGGAC
GCATTCAATATCGAAATTGCCCCAGTCGCACGACGAAGTTTCAAAAAAGGAACGGTGCAA
AATTCAGACAAGTCGGATAACAATGGTCAAACTTTTTTCGGACAAACGTTCAGTGGAAAC
GTGATTCAATTAAATCGAGAAAAATATGTGACATTTATGGTCAGTGCTCCGGGGGAACTA
ACAGAGGAAGATGTGAAATTGACGACAGGCGGACGAAGAGTCGGTAATTCTGTACGGTCT
GGTGCAGCAGGCTCCACTAATACCTCAGGAGTTCTTTACATGTGCGATATGCCAACACAA
AGCTTTGCTCTCAACGAGAACAGCACCAATGGCTTAAAGTTCAACTGTACAGAAAAGAAT
CCTTTCACGAGAGAATTCTTGGCACAAGATTATGGTCGACATGACACTCTTGGGATCTCA
TTAACGGCAGATCCCCGAGCTAATCAGTCTGCCAGAGTACATTTGCCATCAGAAGTGATG
CTGGCTTGTGCGCATCTTCGATCTTATAATTGCTCCAACACTTTGAATGCTGAAGGGACA
TGCTACTTGTCGAAGGTAGGCCCAGGACGAGGAGATGCCGGACATCTAGAGGCACAATGG
AGAAAGAAAACTCCATGTGTATCCGAGTGCACGAAGAAGATGATTGACCTGATATTTCTC
ATCGACGGTTCTCAGTCAATCACAAATATCTCCTTCGAACTTATTAAGGATTGGATCATT
AATATCGCTTCCGGGTTTAATATTTCAGACGATGTACATGTGGGAGTGGTGCAGTTTTCT
CACTATTACCCGAAAAGGCGTCTGTCAAGGCAACCATACATGAAGACGGAAATTGAATTG
GGAGAGTTCAAGAATATCGCAAATTTTAGGAAAGCAGTACAGCAAATTAATTATCATGGA
TTCACGACTTATACCGCCCATGCTATCGAGAAAGTTGTCAGATTTGATTTTGGTGGTTCT
CGTTCTCGTTACCCAACTGCTAGTAGAATTTTGATCCTGCTGACTGACGGAGAATCATCG
GATCATGATTATTTGAACGAAGCAGTGAACATAGCGCGGAGTAACCGAGTTGTATCGTTT
GCTGTTGGCGTTGGACAATACGATGTCGATGAGTTGAAACTCATAGCAGGAAATGATGAT
CGAGTCATTACAGTTACTACCTTCACTGAATTGCAACAAATCGTTCAACAAATGCAACGT
GGAATTCAATCAATTGAGGGTAGTACAGCGTCGACTGCTAACAATGGACTGAATCAGTGT
CAAGCTGGGATTTCTTCTTGTATATCCAAGAATACGAACGGATATGCCCAACTTGCAAAT
AATATGACGTTTTTTGGATATTCCTTACAAGGAAATGTCATTGAACGGGAAGGAAGAAAG
ATAATATCGGTTATCGTTGGAGCTCCATTACAAATAGTTGATGATTACACGAGTACAGCT
CCGCCGGAAGAAGGTGGAGAAAGAGTGCCAACACCGTTGGGCCTGCGATCATCATCATCA
TCACGATCTCGCGCATTGAAGGCCACCGAATCTTCTGGAGTATTGTACGCCTGCGATATG
CTTGTTGATGGCTTTACACTTGAAGAAAACGCAACTGCAGGGTTCTTCTATAACTGCACA
AACAAGGAGAAAGTTGATAGAAATTTGGAAGGACCAGATATTAGCAGTCACGACACCCTT
GGTGCTACACTTGTGTCAGACAAAAGACCGAATTCGCCCATAACCGCTCTTCTACCAAAG
GACTACATGCTGACGTGTGCTCCTCTCCGTGCATACAATTGCTCCTCAAATTATAAAGCT
GAAGGGACATGCTATTTGTCGAAAGTCGTTCCTGGACGTGGAGACGGACGTTACTCAGTT
TCATGGAGCAAGAGATCGCCGTGCCGAGAAGTTCAAGTCGGCGTGGTACAATATTCCCAT
TGGTACCAAGACGAGGACCAACGCCACCAACCCTATCTTAAGACAGAAATAGCATTAGGA
ACACATAAAAATCAACGAGATTTCGCAACTGCGGTGAAGAAAATAAAATTTCATGGCTTC
ACCACTTACACTGCTCATGCAATCACGAAAGTCGTCAGGGATGATTTCAACGGCACTAAT
TCACGTTATCCCCTTGCTAGAAGAGTGATGATCCTTCTTACAGATGGAAATTCTACTGAC
AGAGACGATCTGGATGCTGCAGTGGCTTATTCACGAGACAATGATGTGACGTCATTTGCA
GTTGGGGTTAAAGGTTATCAATTGGAGGAGCTACTCCTCATTGCTGGATCTAAGAGCAGA
GTGATCACGGTGCAGAATTTTAATGAATTACAAGGAATCGTCGAGCAAATTCAATTCGGT
ATTCAGTTGTTGGAAGGCAGCAGCAATCCTAACACCACCAATGGACTGATGCAATGTCAA
GCAGGCATATCGAGCGACATGTCACAAGCTGTTCACAAAGACGGGAGATGCGTACATCGT
ACATGCGAAAAGCGACATCCGCAAAAGCAACGGCCTGAGCACAAGCAATATCAATCGAAG
AAGACGCCACTAGTGGTGAAATTTATGGTAAATCACGTATGGGATGCCTCGTCGGAAATC
GATTTCAACATTGAAGTTAAATATGGATGCAATATATCTCGAACTCATCCAGAAGTGGGA
TCATCATGTGCTAAGGCTGCACAAATGAACTTCCCGGTATCATCTAGGAATCTGACGTCT
TATGGTTCAACGTCTGTTACAATCAGAGACGATGCAAATAATGGCTTGATACTGGTTTGT
CGACCTCAGTCGGAGCAAATCTGTGATTCTCAATCCTTTGCTCCTGGTGCTTGCTTNTTG
ACCACTGTGAACACGACATTATCTCCTCAAAATCACAGAATGACCTCGACGCGCAAATGG
ACAGAAATGTCACCTTGTCTTCAAAGGTGTATACCAACTCAAGTAGATTTGGCGTTCGTG
GTCGATGGCTCATCTTCGGTGACGAAGGATAATTTTGAACGTGTTCTTAATTGGATGCAA
GAGATCTCCAGCAACTTTGACGTATCTGGTCAATACAAAATAGCTGTTGTTAAATATTCC
AGACCGATGCGAACACGCGTGGAGATACAACTCGGACAATATACGGCGCAGTCAACTCTT
TCCCAAGCTATTTCGAATATTAAATACGCTCCTGGTGGATCGTATGCGAGTTATGCAATT
AACATGACTGTCAAGAACGTCTTCATGAGCGAACAAGGGAGATATCCCCACGCACGAAGA
GTGATGATATTTTTAACAGATGGAAAGTCTACTGATTCATCAAGCAAGCTGAAAGTCACC
ACAGACTATTCTCGTGCAAACGATGTCGAAGCCTTTGCCGTTGGCATCGCAGACTATCGA
ATGAACGAATTATTGATGGTGGCCGGAAATTCTTCCCGAATCTTCACAGAGGAAAACTAT
GAAAATTTATCAAANACGATATCAAAAATAAAAACAAAAATACGGCAATTNGAAGGTGGA
AATACACTCAGTCAAAGTCTCCAGAACCCGGGACTCGACCATTGTGGGATCGGAAGCTCT
GTTTCATTAAGTGGTAAAGAG
| Gene3D |
Integrin_alpha_N (IPR028994) - T[106-230] 9.4E-47 - T[437-451] 9.4E-47 - T[920-991] 1.1E-41 - T[1180-1188] 1.1E-41 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[222-424] 1.51E-42 - T[649-798] 1.34E-25 - T[979-1175] 7.15E-38 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[231-420] 9.4E-47 - T[640-816] 4.2E-27 - T[992-1179] 1.1E-41 |
| SMART |
VWF_A (IPR002035) - T[234-419] 2.7E-32 - T[608-795] 2.0E-8 - T[994-1168] 5.0E-24 |
| Pfam |
VWF_A (IPR002035) - T[236-417] 4.3E-33 - T[649-796] 1.5E-20 - T[996-1165] 6.4E-29 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[236-418] 26.507 - T[649-797] 16.24 - T[996-1170] 25.187 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MATN1_HUMAN | 32.632 % | 91.3 | 6.71E-19 |
| ITAX_HUMAN | 27.419 % | 89.4 | 7.38E-18 |
| ITAL_HUMAN | 25.89 % | 97.4 | 2.79E-20 |