- Clone 'cima8107482' >
- Transcript 'Harore.CG.MTP2014.S7...' >
- Clone 'cieg046n15' >
- Transcript 'KH2012:KH.C3.74.v8.C...' >
- Transcript 'Boleac.CG.SB_v3.S463...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S463.g10182.01.t
Possible name(s)
HNRNPA1; HNRNPA1L2; HNRNPA3
Gene model
Location
S463 [38,108 / 54,032]
Amino acid sequence
Length: 485
>Boleac.CG.SB_v3.S463.g10182.01.p
MAPDELAVINKLQFDEKQKRLGLPQSHELKVHEMLKKGWNAEGSPFKGQEFDPKMFNISP
SSYCVVMKDSQTKRSRGFGFVTFKKVCNVDKAMAKRPHKLDGRTVTPKRAVSREDSEKPG
AHATVKKIFVGGIKDDTTEDGLRRYFEKFGPVEIVEVMMDRDSGKSRGFAFVTFQDHDSV
DKIVSQKYHTINGHNCEVRKALPKSELDKAKAKQDSRRDDRDRGRYPPPPDHYRDRYDDR
YGPPREPSRYSPPPPRYYDRYESEYDRYRSGYDRYPPDRYAPPREYDRYAPPPERYAPPP
AEYDRYRDYGRDYPPREYASRSSSDYYRRESYGSERPPASYESYPRESERDRYAAAPPPA
TAERSTSSSAYPERSSSASYTAQPTSYERDPRTESRERDPYARSASSSYSSSTVPYSQYE
TSRPKEAPTASSSAYDYAAYSQSSSSYGPVKSSSSYSSRSAGPYGSRWSASEKDQSKRSL
QDIPR
Nucleotide sequence
Length: 1,455
>Boleac.CG.SB_v3.S463.g10182.01.t
ATGGCTCCTGACGAACTTGCTGTAATCAATAAGCTGCAATTTGATGAGAAGCAAAAACGT
TTGGGACTTCCGCAAAGCCACGAGTTGAAAGTACATGAGATGTTGAAAAAAGGCTGGAAT
GCAGAAGGATCTCCTTTCAAAGGCCAAGAATTTGATCCGAAAATGTTCAACATTTCACCG
AGTTCATACTGCGTCGTTATGAAAGACTCACAAACGAAACGGTCAAGAGGGTTTGGCTTC
GTCACATTCAAAAAAGTGTGCAATGTTGACAAAGCAATGGCAAAAAGACCACACAAGCTT
GATGGAAGGACAGTTACCCCGAAGAGAGCNGTCTCGAGAGAGGATTCCGAAAAACCCGGT
GCTCACGCAACAGTGAAGAAAATCTTTGTAGGCGGAATCAAAGACGACACGACAGAAGAT
GGTTTGAGAAGATATTTTGAAAAATTCGGTCCAGTCGAAATTGTTGAGGTGATGATGGAC
AGAGACAGCGGAAAAAGCAGAGGGTTTGCATTTGTCACTTTCCAAGACCACGATTCCGTC
GACAAGATCGTCAGTCAAAAATATCACACAATCAACGGCCACAACTGTGAAGTTCGAAAA
GCTCTACCAAAAAGTGAATTGGACAAAGCCAAAGCTAAGCAAGACTCGCGAAGAGATGAT
CGCGACAGAGGTCGGTATCCCCCACCTCCAGATCATTACCGAGATCGTTACGATGATAGA
TATGGACCTCCACGTGAGCCAAGCCGTTACTCACCACCGCCACCAAGATACTATGACAGA
TACGAGTCCGAGTATGACCGATACCGCTCGGGATACGATCGCTACCCTCCTGACAGATAT
GCTCCACCTAGAGAATATGATCGGTACGCCCCGCCGCCCGAAAGATATGCTCCACCACCG
GCCGAGTATGATCGTTACCGAGACTACGGAAGAGATTACCCTCCCAGAGAATATGCCTCC
AGAAGCAGCTCTGACTACTACAGAAGGGAAAGTTATGGCTCTGAGCGACCGCCAGCTTCT
TATGAATCCTACCCACGTGAAAGTGAGCGGGATCGATATGCTGCCGCTCCTCCGCCGGCC
ACAGCCGAACGATCTACTTCATCTTCTGCATACCCTGAGAGAAGCAGCAGCGCTTCTTAC
ACTGCTCAGCCTACTAGCTATGAAAGGGATCCTCGCACTGAATCAAGAGAACGAGATCCA
TACGCCAGATCTGCGTCGTCCAGCTACTCATCGAGCACAGTTCCATATTCACAATATGAA
ACATCGAGACCAAAAGAGGCTCCAACAGCCTCTAGCAGTGCGTATGACTACGCCGCCTAC
TCGCAAAGCAGCAGCAGTTATGGACCGGTGAAATCCAGCAGCTCCTACAGCAGCCGATCA
GCTGGACCTTATGGAAGTCGTTGGTCAGCCAGTGAGAAAGATCAGTCCAAGAGAAGTTTG
CAAGACATTCCAAGG
| SMART |
RRM_dom (IPR000504) - T[28-108] 0.094 - T[127-199] 1.1E-25 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[47-116] 1.6E-12 - T[120-201] 3.0E-26 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[54-118] 8.655 - T[126-203] 17.609 |
| Pfam |
RRM_dom (IPR000504) - T[61-105] 2.5E-6 - T[128-192] 2.6E-17 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[62-133] 3.53E-14 - T[122-226] 8.6E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ROA1_HUMAN | 72.789 % | 233 | 2.62E-72 |
| RA1L2_HUMAN | 70.861 % | 233 | 6.98E-73 |
| ROA3_HUMAN | 74.83 % | 231 | 1.92E-71 |