- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C12.191.v2...' >
- Transcript 'KH2012:KH.C7.199.v2....' >
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- Transcript 'Boleac.CG.SB_v3.S4.g...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S4.g09053.01.t
Possible name(s)
SGSM1; SGSM2; TBC1D25
Gene model
Location
S4 [248,630 / 260,987]
Amino acid sequence
Length: 949
>Boleac.CG.SB_v3.S4.g09053.01.p
MLCVIWSLFGPCALEYTKMKTSDHYWSDPPADELLQRHKLHCRHEEQLHGRPKLPLSRYS
SMEPTEKSSGVGEAGKNFREYVESLHQNSKSTLLYGKNNVIVQPRDEMKPIHGYLSLHQV
LDSLFIKWTPNQLMNVNEQEKSVNCNHDSERLNEDGQNEESRHPLTQKDDMNNVIHKRPD
TFLRRDQPNDNHANVLSYWEYAISVNVKDIVYLHCHQKSDAKGTLVLVGQDGVQRPPICF
PPGGHLLAFLTCLETGLLPLGHLDPPLWLQRGKGKVFPRLRNRSSQSSTSTSSGSFDAVE
TTDFVFRVTSGRPKTINSATSVLAAETSFVQPILSNAAIPDTITPTFSSLYRDCASTEKS
EDTTISHQRIARIQPPAEIIPIQENFDAYDIGPGYTCYDSTEQSYSSRSSLKVLCDTMRR
QIVSRAFYGWLAHCRHLSTVRTHLSALVLPDRNPLPLEQASPINSETWNSFLLNGRLSDT
DTFMKRVYFGGIEHEMRNVLWPFLLNHYPMDSNWEEREKIDAEALDDYRSVVSEWKVAEK
IVIEQRQRXSLAAKLSCESCASSMSSLDCPPKQVMQAMRQQSTMSDVFTSLEKDTSEMSH
QSWDSSHDKGSGSIHNQLIRKQYAMNDKLNQNKLAGEHTPYSSVSTETSNVARQQSSTTV
SSSVMDAEDSINEETKLGDIIETHLETEQNGIETNAKGSESESSHHKAPLTKQDGIDMGN
GIHKTEELVENFGLNLHRIEKDVHRCDRNHEYFSTAENLEKLQNIMCSYVWRNLKSGYMQ
GMCDLAAPLLLLMDDESKVFSCFTQLMKRMEGNFPTGNAMDAHFANMRSLLQVLDSELFE
RMNENGEYTHFYFCYRWFLLDFKRELSYDNDVFAVWETIWAARHVCSEQFVLFFALALLH
NYRDIILDNEMDFVDMIKFFNEMAERHKAGHILKLAQSFVYEVQSLISK
Nucleotide sequence
Length: 4,078
>Boleac.CG.SB_v3.S4.g09053.01.t
ATGCTATGTGTTATTTGGTCTTTATTTGGTCCTTGCGCTCTTGAATACACGAAAATGAAA
ACATCTGATCACTATTGGTCNGATCCACCTGCAGATGAACTCTTGCAAAGACACAAACTT
CATTGCAGGCACGAAGAACAATTACATGGACGTCCGAAATTACCATTGTCAAGGTATTCT
TCTATGGAACCAACAGAAAAATCTTCTGGTGTTGGAGAAGCNGGGAAGAATTTTCGAGAG
TATGTTGAATCATTGCACCAAAACTCAAAGTCAACTCTATTGTATGGGAAGAACAATGTA
ATTGTGCAGCCGAGAGATGAAATGAAACCCATCCATGGGTACCTATCACTTCATCAAGTG
TTAGACTCGTTGTTCATCAAATGGACTCCTAATCAACTGATGAATGTAAACGAGCAAGAA
AAAAGTGTAAATTGCAACCACGACAGTGAACGTTTAAACGAAGATGGACAAAATGAGGAA
TCCAGACATCCGTTGACACAAAAAGATGATATGAACAACGTAATTCACAAACGACCCGAC
ACGTTTTTGAGACGTGATCAACCAAATGACAACCATGCAAATGTTTTATCTTATTGGGAG
TATGCGATCAGTGTAAATGTGAAAGATATTGTCTATCTACATTGCCATCAGAAAAGTGAT
GCTAAAGGGACTCTTGTTCTTGTCGGTCAAGATGGAGTTCAACGACCACCGATTTGTTTT
CCACCTGGTGGACATCTCTTGGCGTTTTTAACATGCTTAGAAACTGGACTTCTTCCTCTT
GGACATCTTGATCCTCCTTTGTGGTTGCAACGGGGAAAGGGCAAAGTATTTCCAAGATTA
CGGAACCGATCGTCGCAATCCAGTACCAGCACCAGCAGTGGATCCTTTGATGCTGTGGAG
ACTACTGATTTTGTATTCCGGGTCACGTCAGGAAGACCCAAGACCATTAATTCCGCCACA
AGTGTCTTGGCTGCTGAAACTTCATTTGTTCAACCTATATTGTCAAACGCTGCCATCCCT
GACACGATAACACCAACCTTTTCCAGCTTATATCGTGACTGTGCATCCACTGAAAAGTCT
GAGGACACCACAATTAGTCATCAAAGGATTGCTCGTATTCAACCACCCGCTGAAATTATT
CCGATCCAAGAAAACTTTGACGCCTATGATATTGGACCAGGGTACACTTGTTACGATTCG
ACAGAACAATCGTATTCCAGTCGGTCATCTCTCAAAGTTCTATGCGATACGATGCGCCGT
CAGATTGTTTCAAGAGCATTTTATGGATGGCTTGCTCACTGCAGGCACCTATCTACAGTT
CGAACACATCTTTCTGCTCTGGTTTTGCCAGACAGAAATCCACTGCCGTTAGAACAAGCA
TCACCCATAAATTCGGAGACATGGAATTCTTTTCTACTAAATGGAAGACTCTCTGACACC
GACACATTCATGAAAAGGGTGTATTTTGGAGGAATAGAACATGAAATGAGAAATGTTTTA
TGGCCTTTCTTACTCAACCATTACCCAATGGATAGTAACTGGGAAGAAAGAGAAAAGATT
GATGCGGAAGCTCTCGATGATTATAGGAGCGTCGTGTCAGAGTGGAAAGTTGCCGAAAAA
ATTGTGATTGAGCAAAGACAAAGAGANAGTTTGGCTGCTAAACTATCATGCGAGAGCTGT
GCCAGCTCAATGTCAAGCCTTGATTGCCCGCCAAAACAGGTTATGCAAGCAATGCGTCAA
CAATCTACTATGAGTGATGTGTTTACATCGTTGGAGAAAGACACTTCAGAAATGAGTCAT
CAGAGTTGGGATTCTTCTCATGATAAGGGTTCCGGTTCTATCCACAATCAACTAATTAGA
AAGCAGTATGCTATGAATGACAAACTCAACCAGAATAAACTTGCTGGTGAGCACACCCCA
TACTCGTCTGTCAGCACAGAAACGTCGAATGTTGCCCGTCAGCAATCCTCTACAACCGTA
TCAAGTTCGGTTATGGATGCTGAAGATAGCATTAATGAGGAAACTAAGTTAGGCGACATT
ATAGAAACTCATCTGGAAACGGAACAAAATGGCATTGAAACTAATGCTAAAGGAAGTGAA
TCAGAATCGTCGCACCACAAAGCACCATTGACAAAACAAGACGGCATTGATATGGGTAAT
GGAATACATAAAACTGAAGAACTTGTTGAAAATTTCGGCTTGAACCTACATAGGATTGAA
AAGGATGTTCATCGATGCGATCGAAATCATGAATATTTCAGCACGGCAGAAAATTTGGAG
AAACTGCAAAATATCATGTGCAGTTATGTTTGGAGAAATCTCAAGTCCGGATACATGCAG
GGTATGTGTGACCTGGCTGCTCCATTGTTGTTACTGATGGATGATGAGAGCAAAGTATTC
AGTTGTTTCACTCAACTGATGAAACGAATGGAAGGCAACTTCCCTACCGGCAATGCAATG
GATGCTCATTTTGCTAACATGAGATCTCTACTCCAAGTTCTTGACTCTGAGCTGTTTGAG
CGGATGAATGAAAATGGAGAATACACTCATTTCTATTTCTGCTACCGATGGTTCTTGCTT
GATTTTAAACGGGAATTATCATATGACAATGACGTGTTTGCTGTTTGGGAGACAATATGG
GCCGCTCGACATGTGTGCTCTGAGCAATTTGTGCTATTCTTTGCCTTGGCTCTCTTACAT
AACTACAGGGATATTATTTTGGACAATGAAATGGATTTTGTGGATATGATCAAGTTCTTC
AATGAAATGGCGGAACGGCATAAGGCTGGTCATATTTTGAAGCTTGCTCAAAGTTTTGTA
TATGAAGTTCAGAGCTTGATTTCAAAGTAGGATACAANCACGGAGTTCTTGAAAGAATAG
ATGATAGAGTATTTCATTCCTTACCACCAATTGATAAGAGAGAAAACCCTTATATATTTC
ATCTTTGTTCGACTTGACTGTGCACTTTTCACTCGCCATTCGTTCCATAGGCTATTACTG
TTATTCATTTTCAATAATTTTTTGCACACAATAGTCCAATATACAGGTTCCTGTGTTCTA
ATGAGGGGCGGCAGTAGGCTTAGGCTACTTGTCGTCAGCTTGATGACTTGGTGGTCTATT
CAACAGCAGTTGTAGCTGGAAGAACTTATGGAGACCAAAACCTATCCTCATTTGACAGGC
CATTGCTAAATCACTGCACTATTTCCAGTTTTACTCTTACTAACCACTTATACATTTGTA
ATTTGAATTGCAAGGTACCGGCATATAAAATAATTGATTTTCAAAACAGCAAGGCCTATT
TTGTCTTTTGGCCCTGAACTCATACAATGTTGCAATACTAAAATATCGCATTTCATTGAG
TGCCTTGCGATAAAGACACAGATTACCCAGTGTTAACACGTGATGGTGCAGTCGGCAGCA
TTTTGCCTTGTTGCAAAATATCCTGAGAATTCCTCAACCCCACACCTCTGTTCTGTAGCT
TTAACAAATGTGGATACAATTTCTTTTCCTTCTATTCTATATAGGAATGTACTAATAGCT
AGTATGGCGGTTTGGTTAAGAGGATAATTGCTTTGGGAGCAAAGCTATGGCAATATATGC
AATACACAAAAGTCTACATTTGAACTGAACTTCCCTAAGCAGTGGTTATAATCAAAGAAC
TTTCTTCATTCGTAAAATTTGTTTTTGTTGATATGCTATGTTTTTGCAGTGCAGTATATT
TCAATTTTTACTCGTTCTGTTGTTGGGCGTAGTTGCAATATTGATCCAACTTGAGAGATT
TTGCTGTTAGAGATGCATGTTTTAAATTAATCCTGCTTTTTACTGTATCTTTGCAAAAAA
TATAATATATATGTCTAATTGCAGATCTGCAGAGATTATTTCCATGTCCAGTTCGTTCTG
CTTTAAAAAGAAAAACTGTATGACTGACAACTTTTCCATTGCCAGAACCATCATTGGTTC
TGCCTTGAAGCTTCTCCTGCAAGCGCATGAAGGCGAGAACGTATAAATAATTTTGAACGC
AACAGTTCAAAAATCTTGTTGGATTCGAAATTCTATTTTACTCATCCCTACTCACTAC
| CDD |
SGSM1/2 (IPR037745) - T[91-310] 4.33443E-78 |
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[467-530] 2.35E-40 - T[722-838] 2.35E-40 - T[818-940] 3.4E-23 |
| SMART |
Rab-GTPase-TBC_dom (IPR000195) - T[488-910] 2.9E-38 |
| ProSiteProfiles |
Rab-GTPase-TBC_dom (IPR000195) - T[491-883] 29.117 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[726-906] 1.3E-35 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SGSM1_HUMAN | 52.663 % | 351 | 1.37E-104 |
| SGSM2_HUMAN | 45.455 % | 454 | 2.33E-144 |
| TBC25_HUMAN | 38.514 % | 117 | 4.9E-27 |