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TRANSCRIPT CARD

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  1. Clone 'AHC0AAA129YB22' > 
  2. Transcript 'Boleac.CG.SB_v3.S609...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S609.g12324.01.t

Possible name(s)

HMCN1; SEMA5A; THBS1

Gene model

Boleac.CG.SB_v3.S609.g12324

Location

S609 [40,414 / 43,664]

Sequences

Amino acid sequence

Length: 480

>Boleac.CG.SB_v3.S609.g12324.01.p
QTDTRRSNFPVAPATNTFLPTDFVLPCPTFNVAGQYRLDLVATSSHGDDVTLSQSAVINV
EWSSDYNLRLEKNSFPCAGLGVTVTLTTPACPSQLDKIRLLSASDGVMATIATKVKGLDD
HVIFPCRVFRNINTTIQGLCFQYVTETGHVTRTICEPISSGSDFKMAGSWSLWTEWTSCR
RPCRKATLRRKRVCNNPTPQGEGELCERDDGRRDEEELLVAEADGMPDNCESGVVSSQFD
KKCGCGLRDGDASFHMTSHFPSATSRSNMSIVQFVKSRERNNLNSCGFVLDLEVVDAPTT
LATHTTYPTFDEADTDVFGWIRSTFTNNPVVVGGIGACVVIILIVVIVAVAHRRRREKGK
TPPGIRTPMNNRMAMPPDGRSCSNAEDTESEPMVRPRPVGTSDNADVTTETAAPSQPPVG
ASTAYYLAQRQLEIMKRLGKNQHTQSYATGFLSEDAIRQQEELLFGDRKSLHKNEELRVT

Nucleotide sequence

Length: 1,726

>Boleac.CG.SB_v3.S609.g12324.01.t
CAAACTGATACCCGACGTAGCAATTTCCCGGTCGCGCCAGCTACGAACACTTTCCTGCCC
ACCGACTTCGTGTTGCCATGCCCAACATTCAACGTTGCGGGACAGTACCGCCTTGATTTG
GTTGCGACGTCATCGCACGGAGATGACGTCACATTATCTCAAAGTGCCGTTATCAACGTA
GAATGGAGCAGCGACTACAATTTGAGGCTGGAAAAAAATTCATTTCCTTGCGCCGGGCTT
GGAGTGACTGTGACGTTAACAACGCCTGCTTGTCCGTCACAATTGGATAAAATTCGTCTT
CTGTCGGCGTCTGACGGAGTCATGGCAACAATAGCTACCAAAGTTAAAGGACTTGACGAT
CACGTGATATTTCCATGCCGCGTTTTTCGCAACATCAACACCACCATTCAAGGTCTGTGC
TTTCAATACGTCACAGAGACAGGTCACGTGACAAGGACGATTTGCGAGCCGATCAGCTCC
GGTTCAGATTTCAAAATGGCTGGATCTTGGTCGCTGTGGACAGAATGGACGTCGTGTCGA
CGTCCGTGCCGCAAGGCGACCTTGAGGAGGAAGCGGGTTTGCAATAATCCAACACCACAG
GGAGAAGGAGAACTGTGCGAGCGAGATGACGGTCGTCGAGACGAGGAGGAGTTGCTCGTA
GCGGAAGCTGATGGGATGCCAGATAACTGTGAAAGCGGCGTTGTTTCATCACAATTCGAC
AAGAAATGTGGCTGTGGATTGCGAGACGGAGACGCTTCCTTTCACATGACGTCACACTTT
CCGTCCGCGACGTCACGAAGCAACATGAGCATCGTACAGTTTGTAAAGTCAAGGGAAAGA
AACAATTTGAACTCGTGCGGATTTGTGCTTGACCTCGAAGTTGTAGATGCTCCAACCACA
CTGGCCACCCACACCACGTATCCGACATTCGACGAAGCGGATACGGACGTGTTCGGTTGG
ATTCGAAGCACTTTCACAAATAACCCTGTCGTTGTTGGTGGAATCGGAGCTTGTGTCGTC
ATAATACTTATTGTTGTCATAGTAGCGGTCGCTCACAGAAGGCGGAGAGAAAAAGGCAAG
ACTCCGCCGGGGATTCGAACCCCTATGAACAATCGTATGGCGATGCCGCCTGATGGCCGA
AGTTGCAGCAACGCCGAGGACACGGAATCTGAGCCTATGGTGCGACCAAGGCCGGTGGGG
ACTTCTGACAATGCTGACGTCACAACGGAAACAGCGGCTCCGTCGCAACCACCGGTTGGA
GCAAGTACAGCTTACTATCTTGCGCAAAGGCAACTCGAAATAATGAAGCGTCTCGGGAAA
AACCAGCACACCCAGTCATACGCGACTGGATTTCTGAGCGAAGACGCGATCAGGCAACAG
GAAGAGTTATTGTTCGGTGACAGAAAAAGCCTCCACAAGAATGAAGAGTTACGCGTCACG
TGACAGAGCGAACGACTCTTTCTGAGTCACGTGACTGTCACGAGACACGGCGAATGAAGC
TGAAAACATGTTGAACGTGACCTTGGATAAAGAGCATCACTTCGTTTCGGCAGACCTGGG
ATGGGAACGATCGCCTTCTAAATGAAGTCTCATGGGATCTACCTTGCCGTTTCAACTTTC
AAACGGCAAAGATTCTTTCTCTTGGCCTGCAAGTCCTACTTTGCGAACATTACCTTCAAG
AGTTCAAAATTCACTGTAACATCGTTTGTACGCACTCCTATCATAA

InterProScan

SUPERFAMILY
TSP1_rpt_sf (IPR036383) - T[167-208] 1.96E-8
ProSiteProfiles
TSP1_rpt (IPR000884) - T[167-216] 9.394
Gene3D
TSP1_rpt_sf (IPR036383) - T[167-217] 5.2E-10
SMART
TSP1_rpt (IPR000884) - T[170-227] 4.5E-4
Pfam
TSP1_rpt (IPR000884) - T[171-210] 2.8E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value