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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L170.28.v5...'
  2. Transcript 'Boleac.CG.SB_v3.S230...'
  3. Transcript 'Cisavi.CG.ENS81.R77....'
  4. Molecular Tool 'Ci-lefty/antivin mRNA'
  5. Transcript 'Boleac.CG.SB_v3.S616...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S616.g12411.01.t

Possible name(s)

CLDN1; CLDN19; CLDN2

Location

S616 [2,201 / 3,912]

Sequences

Amino acid sequence

Length: 307

>Boleac.CG.SB_v3.S616.g12411.01.p
MSESVFYGQIGAFFVGFVSTVMCTVTCCWNLWSITSDAESAAVLGAIWGFNGIWIECIQH
TSGSFQCDEYGSSVFNLPSYMNCIRAMMCIAIICSVLGCFTSLVGMQASRLLETIPKKKR
IAVQVTGGFFITAGILTTASLGWYAGMVMTDFFSPENIDNMILLGCFTSLVGMQASRLLE
TIPKKKRIAVQVTGGFFITAGILTTASLGWYAGMVMTDFFSPENIDNMIRYTIGATFYVG
VGSAIFSFTAGILFLCLAGPKDEEDDDSYNIAQFMNAPDYTFRPSISKRPYYRTETVPPR
RNTIQYV

Nucleotide sequence

Length: 924

>Boleac.CG.SB_v3.S616.g12411.01.t
ATGTCTGAGTCGGTGTTCTATGGACAAATTGGAGCATTTTTCGTAGGATTTGTGTCCACG
GTGATGTGTACCGTGACATGTTGTTGGAATTTATGGAGCATAACTAGTGACGCAGAGAGT
GCAGCTGTTCTTGGAGCAATTTGGGGTTTTAATGGAATCTGGATTGAATGTATACAGCAC
ACGTCTGGTTCATTTCAATGTGATGAATATGGCTCTTCGGTTTTTAATCTACCATCTTAC
ATGAATTGCATTCGGGCTATGATGTGCATTGCCATCATATGTTCAGTGTTGGGATGCTTC
ACCAGTCTCGTTGGTATGCAAGCAAGCAGATTATTAGAAACCATTCCCAAGAAAAAGCGC
ATCGCGGTTCAAGTAACAGGAGGCTTTTTCATTACTGCCGGGATTTTAACCACTGCATCT
CTGGGTTGGTACGCTGGTATGGTGATGACTGATTTCTTTTCTCCTGAGAATATCGACAAT
ATGATTCTGTTGGGATGCTTCACCAGTCTCGTTGGTATGCAAGCAAGCAGATTATTAGAA
ACCATTCCCAAGAAAAAGCGCATCGCGGTTCAAGTAACAGGAGGCTTTTTCATTACTGCC
GGGATTTTAACCACTGCATCTCTGGGTTGGTACGCTGGTATGGTGATGACTGATTTCTTT
TCTCCTGAGAATATCGACAATATGATTCGTTACACGATCGGAGCAACCTTTTACGTGGGT
GTTGGTAGCGCGATCTTTTCATTTACTGCTGGAATTTTGTTTCTGTGCCTTGCGGGACCC
AAAGACGAGGAAGATGATGATAGCTATAACATAGCTCAATTCATGAACGCACCGGATTAT
ACTTTCAGACCATCAATCAGTAAAAGACCATATTATCGGACAGAAACTGTACCGCCCAGG
CGAAACACAATACAGTATGTTTAG

InterProScan

PANTHER
Claudin (IPR006187) - T[5-163] 4.2E-67 - T[162-268] 4.2E-67
Pfam
PMP22/EMP/MP20/Claudin (IPR004031) - T[11-156] 4.6E-9 - T[162-255] 4.7E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CLD19_HUMAN 30.137 % 76.3 2.15E-16
CLD1_HUMAN 27.972 % 76.3 2.11E-16
CLD2_HUMAN 32.895 % 75.9 3.47E-16