- Transcript 'Haaura.CG.MTP2014.S6...' >
- Clone 'cima876863' >
- Transcript 'KH2012:KH.C5.61.v4.A...' >
- Transcript 'Haaura.CG.MTP2014.S4...' >
- Transcript 'Boleac.CG.SB_v3.S678...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S678.g13049.01.t
Possible name(s)
MUC4; PPP2R1B; SF3B1
Gene model
Location
S678 [43,438 / 47,464]
Amino acid sequence
Length: 1,341
>Boleac.CG.SB_v3.S678.g13049.01.p
MASKEDYVSEIKAIQQKKNSLRPPEEKPEAVEEGDEDARVGLGQEGHYDQEIYGGSKSKF
AGYVTSIAPNEQEDEDEGVDSGNALLGKRQTYTAPAAVMKDIAQTEDDYDPFAETRSQPI
TNREDQYRQRRLQRAISPDRHDPFADGGKTPDPEMAWYKNIMSAQNLTKEEREIRSKISE
KLKSGDLHVNGNSQSKAAPAPRERKRRWDATPTPDAPKKKMTWDQAEATPGNAQTPMRWD
ETPGRPKGGETPGGMVTPGQSTRMWDATPGHATPGATTPGHATPGIGGTPSASSRKNRWD
ETPKTERETPGRSLGWAETPRADRGDESERIPGGTSKRKSRWDLTPAAATPGSQTPGSAT
PVFTPGGTPSAFTPKGMGTPSTAGTPSLFTPLGATPVGTKAMAMATPTPGHLMSMTPEQL
QAWRWEREIDERNRPLADEELDAMFPEGYKTLQPPTGYVPIRTPARKITATPTPMAGATG
FHIQVEDKSMKGITDQPTGNLPFLKPDDIQYFDKLLVDVDEESLSAEEQKERKIMKLLLK
IKNGTPPMRKSALRQITDKSREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKL
DDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISVMRPDIDNMDEY
VRNTTARAFAVVASALGIPSLLPFLKAVCRSKKSWQARHTGIKITQQIAILMGCAILPHL
RNLVEIIEHGLEDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRTHRGKGL
AAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVET
QYIKNEILPPFFKHFWNQRMAMDRRNYRQLVDTTVEIANKVGSAEMVQRVVDDLKDENEQ
YRKMVMETIDKILVNLGSADIDHRLEEQLIDGILYAFQEQTTEDIVMLNGFGTVINTLGK
RVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRISIVMRTCQEEKLMGHLGVVLYEYLG
EEYPEVLGSILGALKSIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIA
DRGAEYVSAREWMRICFELLELLKAHKKSIRRATVNTFGYIAKAIGPHDVXATLLNNLKV
QERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK
DYIYAVSTLLEDALMERDLVHRQIASAAIGHMSLGVYGFGCEDALNHLLNYVWPNIFETS
PHVIQAVMSAVDGMRVALGPSRLLQYCLQGLFHPARKVRDVYWKVYNSIYIGAQDSLVPS
YPRFYNDEKNQYLRYELDYVI
Nucleotide sequence
Length: 4,026
>Boleac.CG.SB_v3.S678.g13049.01.t
ATGGCCTCAAAAGAAGACTATGTTTCTGAGATAAAAGCAATTCAGCAAAAGAAAAATTCA
CTTCGGCCTCCTGAAGAGAAACCAGAAGCTGTAGAGGAGGGAGATGAAGATGCCAGAGTT
GGTCTGGGCCAAGAAGGTCATTATGATCAAGAAATCTATGGCGGGTCAAAAAGTAAATTT
GCTGGGTATGTGACTTCTATTGCTCCGAACGAGCAAGAGGATGAGGATGAAGGAGTGGAC
TCGGGTAATGCATTGTTGGGGAAACGACAGACTTACACAGCTCCAGCTGCCGTCATGAAA
GATATCGCTCAAACTGAGGACGATTACGATCCTTTTGCAGAGACTCGATCACAGCCAATC
ACCAATAGGGAAGATCAATATCGGCAACGGAGGCTACAACGGGCAATTTCTCCTGATCGG
CATGATCCTTTCGCGGATGGTGGGAAAACTCCGGACCCTGAAATGGCATGGTACAAAAAC
ATCATGTCCGCTCAAAATCTAACAAAAGAAGAGCGAGAGATACGATCAAAGATTAGTGAA
AAATTGAAATCAGGAGATCTTCATGTGAATGGAAATTCTCAATCCAAAGCAGCACCGGCG
CCACGAGAAAGAAAGCGCAGATGGGATGCTACTCCCACACCGGATGCACCGAAAAAGAAA
ATGACATGGGATCAAGCCGAAGCTACTCCAGGTAATGCTCAAACACCTATGAGATGGGAC
GAAACTCCCGGAAGACCAAAAGGCGGAGAAACTCCAGGCGGTATGGTTACCCCTGGGCAG
AGCACACGAATGTGGGATGCTACCCCTGGTCATGCGACACCCGGCGCTACAACACCGGGA
CATGCCACTCCTGGCATTGGTGGCACACCAAGTGCAAGTAGCCGTAAAAATCGATGGGAT
GAAACACCAAAAACTGAAAGAGAAACACCTGGAAGAAGTCTTGGTTGGGCGGAAACTCCT
CGGGCTGATCGTGGTGATGAATCTGAAAGAATTCCCGGTGGTACAAGCAAACGTAAGTCC
AGATGGGATTTGACACCAGCTGCTGCAACTCCGGGGAGTCAGACTCCAGGATCAGCAACG
CCAGTGTTCACACCTGGAGGTACTCCTTCGGCTTTCACACCTAAAGGAATGGGAACGCCT
AGCACAGCCGGCACTCCCTCTCTCTTCACACCGCTTGGAGCGACCCCGGTTGGTACCAAA
GCAATGGCTATGGCAACACCTACACCCGGTCATCTCATGTCGATGACTCCGGAACAACTT
CAAGCGTGGCGTTGGGAACGAGAAATTGATGAGCGAAACCGACCCCTTGCTGATGAGGAA
CTTGATGCCATGTTTCCTGAGGGATACAAAACTTTGCAACCACCGACAGGGTATGTACCA
ATACGTACTCCTGCTCGGAAAATCACTGCGACACCTACTCCAATGGCTGGCGCGACTGGA
TTTCATATTCAAGTCGAAGATAAGTCGATGAAAGGCATCACCGATCAACCTACNGGTAAC
TTGCCATTCTTGAAACCGGATGACATTCAATATTTCGACAAACTTCTGGTCGATGTCGAT
GAAGAGAGCTTGAGTGCGGAGGAACAGAAAGAACGAAAAATCATGAAACTTCTGTTGAAG
ATCAAAAACGGAACGCCGCCTATGAGAAAAAGTGCTTTACGACAGATTACTGACAAGTCC
AGAGAATTTGGTGCCGGACCTCTGTTCAATCAAATTCTACCGTTACTGATGTCTCCGACC
TTGGAAGATCAAGAGCGTCATCTTTTAGTGAAAGTCATCGACAGAATTCTCTACAAATTG
GATGATTTGGTGCGACCATATGTACATAAAATCCTTGTCGTCATTGAGCCTCTTCTCATT
GATGAAGATTATTATGCAAGAGTGGAAGGCCGTGAGATTATTTCTAACCTCGCAAAGGCA
GCCGGATTAGCTACTATGATCTCTGTGATGAGACCTGATATTGACAACATGGATGAATAT
GTTCGTAACACAACTGCCAGAGCTTTTGCCGTCGTTGCGTCCGCTTTGGGCATTCCATCA
CTCTTGCCCTTCTTGAAGGCTGTCTGTAGGAGTAAAAAATCGTGGCAAGCAAGACACACC
GGTATCAAAATCACTCAGCAAATCGCAATCTTGATGGGTTGTGCTATTTTACCTCATTTG
AGAAATCTGGTTGAGATTATCGAACATGGGTTGGAAGATGAGCAACAGAAAGTACGTACC
ATTACTGCCCTGGCGTTGGCTGCTTTAGCAGAAGCTGCTACCCCGTATGGTATTGAATCG
TTTGATAGTGTTCTAAAACCGTTATGGAAAGGTATCAGAACACATAGAGGAAAGGGTCTT
GCTGCTTTCTTGAAAGCTATCGGATATCTTATACCACTTATGGATGCTGAGTATGCAAAC
TACTACACGCGTGAAGTCATGTTGATCTTGATTCGTGAATTTCAGTCACCGGATGAAGAA
ATGAAGAAAATAGTATTGAAAGTAGTGAAGCAATGTTGCGGAACAGACGGTGTCGAGACG
CAATACATCAAAAATGAAATTTTACCACCATTTTTCAAACATTTCTGGAATCAAAGAATG
GCAATGGACCGTCGAAATTATAGACAACTTGTTGATACGACTGTTGAAATTGCAAACAAA
GTTGGCTCTGCCGAAATGGTGCAACGAGTTGTCGATGATCTCAAAGATGAAAACGAGCAG
TACAGAAAAATGGTCATGGAGACGATTGACAAGATTTTGGTCAATCTAGGATCAGCAGAT
ATCGACCACAGGCTAGAGGAACAACTTATCGACGGCATATTGTACGCATTCCAGGAACAA
ACAACAGAAGACATTGTGATGCTTAATGGCTTCGGCACTGTTATCAACACTTTGGGGAAA
CGAGTGAAGCCATACCTTCCTCAAATCTGTGGTACCGTTCTTTGGCGACTGAACAATAAG
TCAGCTAAAGTACGACAGCAAGCCGCCGATCTGATTTCACGCATATCCATTGTCATGAGA
ACTTGTCAAGAAGAGAAACTTATGGGCCATCTTGGTGTTGTGTTGTATGAGTACCTCGGT
GAAGAATACCCCGAAGTCTTAGGATCTATACTTGGAGCTTTGAAGTCGATCGTGAATGTA
ATAGGAATGCATAAAATGACTCCACCCATCAAAGACCTATTGCCTCGTCTGACACCTATT
TTGAAAAACAGACATGAAAAAGTCCAAGAAAACTGCATCGATTTAGTCGGACGTATCGCC
GATCGTGGGGCTGAATATGTGAGCGCACGCGAATGGATGAGAATCTGTTTTGAATTACTG
GAATTACTCAAAGCTCATAAAAAATCTATCAGACGTGCTACTGTTAACACGTTCGGATAC
ATCGCAAAAGCTATTGGACCACATGATGTTNTGGCGACGCTGCTTAATAATCTGAAAGTT
CAAGAAAGACAAAATCGGGTTTGCACGACTGTAGCCATCGCCATTGTAGCCGAAACTTGT
TCACCTTTTACTGTGTTACCTGCTCTCATGAATGAATATCGAGTTCCTGAATTGAACGTA
CAAAATGGTGTGTTGAAGGCGTTGTCATTCCTCTTCGAATACATCGGCGAAATGGGAAAA
GATTACATATACGCCGTATCTACCTTGCTGGAAGATGCACTCATGGAAAGAGATCTGGTT
CATAGACAAATCGCTTCNGCAGCAATTGGTCATATGTCTCTTGGCGTATATGGTTTTGGA
TGTGAAGATGCTCTGAATCACCTTCTCAATTATGTGTGGCCGAACATATTTGAAACATCA
CCCCATGTTATTCAGGCCGTGATGTCAGCGGTGGATGGTATGAGAGTTGCTCTNGGACCC
AGCAGACTTTTACAGTACTGTTTGCAAGGATTGTTTCATCCAGCGAGGAAAGTCCGGGAT
GTGTATTGGAAAGTTTACAACAGCATATACATTGGAGCACAAGACAGTTTGGTGCCTTCA
TACCCTCGATTTTATAATGATGAGAAGAATCAGTATCTGCGTTACGAACTTGACTATGTG
ATATGA
| Pfam |
SF3b_su1 (IPR015016) - T[335-488] 5.0E-42 |
| Gene3D |
ARM-like (IPR011989) - T[513-947] 1.2E-14 - T[948-1089] 4.1E-8 - T[1098-1311] 6.2E-7 |
| SUPERFAMILY |
ARM-type_fold (IPR016024) - T[537-623] 4.06E-96 - T[659-1138] 4.06E-96 - T[1176-1334] 4.06E-96 |
| ProSiteProfiles |
HEAT_type_2 (IPR021133) - T[723-761] 8.663 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B1_HUMAN | 78.582 % | 2118 | 0 |