- Transcript 'Boleac.CG.SB_v3.S69....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S69.g13159.01.t
Possible name(s)
SMCHD1
Gene model
Location
S69 [112,827 / 135,331]
Amino acid sequence
Length: 1,989
>Boleac.CG.SB_v3.S69.g13159.01.p
MEEDAHVYVYDCRTLEGVKKKITIGGVFSFEEFKCKLVAAFELLQGIDYVITTTNRDVIE
NDDSYFELIEPEDTLYILDHRTQALPSSVSEKIDFQPHYDTLIKSGIYEYYASAGQINPL
PFAFAELIDNALAATVDNKGPREIEVSLNFDDSNNGSHTICVMDNGKGMNSKQLNNWAIY
RLSKFNRKEKPQRTNIFESDMTSEPEKHEKRQNSMPKSLNSDISWFGVGGKQAVFFIGSA
ARVISRPRGSHDVHEFTLSKDEFKRKEANRQTIYSGFIKNRTAGDFSHIPKYDEVTRQLI
AAEENIDWKTNGFTYIIITDVDPGHVQFMKEGFAVWTRQLAHIYHYYIHGPEGNTTLSSG
KHRNASSYIDIKVSLHERGRNSIVVNLRDIDDDLESRYLRSXSDTLEFKVTTDGGGGVVE
GSIRYHPFLFEKETYPLDLNSEDSDEESDGYDALPARGRRPIFECFWNGRLIPYTTVHDF
EWCRMPKKRGSIPNECFYRISGCLFANDAFQVSTNKLTFIDLEGKLRDRSCVFSRVIAGQ
VQRAQIQKQFMEWLKDCHEKYDKQVKFLNFIECFMRSDPSSRKSASGTFSAYKAIEWGGR
VHKKGQLVRTQKVYPVLYGRIHRFILHGSHDGDVYAVGGEVEIIQEPSAIYGEPKRFPLS
KLDRSTSPVDVQPYVDDEEGKLPCYLDLTWPEGNEIKDGESRQYSLTIGAMRIEIHNRRG
ESIQKLPATAGGKKFLIEQTLLHTSNETGRVKEIASHITAHGRSWPYWFKKMGENFNNPS
SRAHEDESVHTVPENLTELGAYKMLIRTVLAESGVYTYKNGRNLPQLEINFVISEAPPYK
FMVGMLQSPLCIGEPFEIPLELQDKEGRSTCAVGEYTAYLESDELEIAHSGLRYKGSSII
LHDVVAVGEVASQQGMDFSLTVTLPQLERESETIKIRLLPGPPKALKINSITRNGIETDC
FSNEETSHYRFDIENNSMIALSVCIVDIAGNVTLERNVTVQAKFPTSSGIDKMTTNCADS
GRGTLSGQIFLKKLKDEKTVTAKISAYGKKEIMPILCEFHVKPSSEVSTIEVFHSDPFSD
SDELTRVKTGSDIYWQAGEVMSNLSFRLLDEGRREVELSRSVCSCLKVNWTKNVPPSVFR
SGTLPNVRAPKNVLDTMYCEIVYSGLNVVQFSFNIKPFAGEPAAIRCNILGNKTTQLGVI
RTDPISVTLQDELGNKLNVKQSQLPLIRVNAEGLDESLIEKVIEDGCVLLTNVQFNQGPL
GGREMCISYEEMKESVVMRITAGTPVTLKVLRWHDVSKPYTVLSGSKMQDLIEVQLMDGW
GFPAQQKGVKILLGKESALKLTPNPGMLLTDENGYAKFNRFSVSAKRGEYHLQPRAVINR
TSIEGPKLKIAVLPNTETPCAIKVTYNNTSSVQAGTKWPDFDVTVTSEEGCAVTSQVNLC
MAIWKGEPFKDKVVPSNAKLHRTDQLAVGIYKFSEIPAPSDSHSYCICFCLCESRHSRNF
TMYSKVIQMFVDPGPPHLLQHEIXPGTPTASNTNLAKTIVTQLALVLHDKYGNMTGKDVD
TEITVSIQASDECLRSTEIPIFDKNKGILQFHMRNGRVLLKDISLKENSPGRDGAQYTLL
CEVATEKIVPYQLKFLFYNDAVKQNQMSILIKKRDMLKNAIDSYQSLFTLHKTLLAELKK
TLKEAENKKKQTLRDLQKYSFLIPPSHSVDDIEDMIMEMKKERAFLQNEPRRRCLLKEYP
DKSSDILGKIGHLAYVEDEDIATVLSWHMMGDMDCLITFTSAKAKEVHRMTGGSQQVLPL
DSIYRKNLPDNSRPLPHMKRGVAVSRVNGNPVFARQLLHFTKDPENCKVVFGMLLGETLI
LDDLESANEYRNQVVKFTYCPTILTRTGERIRSNGKFGGNQNRASSIDRLREFLVKLKDS
VQETDAALMELNSHEASLETDEMLKKKIEHQEALGRLRDIESKIQTSSPRSPAPRQKLTG
SAPPKRRRR
Nucleotide sequence
Length: 6,351
>Boleac.CG.SB_v3.S69.g13159.01.t
CACTAATTGGTAGAGGCATGCGTAGCATAATATAGTAAGAACGCTTGTCGTTCCACAGGT
CGTTTGGGAGATCCCGTAATCATGGAAGAAGATGCACACGTGTACGTTTACGATTGCCGA
ACGTTGGAAGGTGTCAAGAAAAAGATTACAATTGGCGGTGTTTTCTCATTTGAAGAATTC
AAGTGCAAGCTTGTCGCGGCTTTTGAGTTGCTGCAGGGAATTGATTATGTTATCACTACA
ACAAATCGTGATGTCATTGAAAATGATGACAGCTACTTTGAACTAATTGAGCCTGAAGAC
ACGTTATATATATTGGATCATCGCACACAGGCTTTGCCCTCTTCTGTATCAGAGAAAATT
GATTTCCAACCTCATTATGATACTCTAATAAAAAGTGGAATTTATGAATATTATGCTAGT
GCTGGTCAGATCAATCCATTACCTTTTGCCTTTGCGGAATTGATCGACAATGCATTAGCA
GCTACTGTTGATAACAAAGGTCCAAGAGAAATTGAAGTCAGCTTGAATTTCGATGATAGC
AACAATGGAAGTCATACAATCTGTGTTATGGATAATGGCAAGGGAATGAATTCAAAACAG
CTCAATAACTGGGCCATTTATAGATTATCCAAGTTCAACAGAAAAGAAAAGCCACAGAGA
ACAAATATATTTGAATCTGATATGACATCAGAGCCAGAGAAGCATGAAAAGCGGCAAAAC
TCGATGCCTAAATCACTGAACAGTGATATATCATGGTTTGGTGTTGGTGGTAAACAAGCT
GTTTTCTTCATTGGTAGTGCTGCACGGGTTATATCTCGACCACGGGGATCACATGATGTG
CATGAATTCACGCTTTCTAAAGATGAATTCAAGCGTAAAGAAGCGAATAGACAAACTATA
TACAGTGGTTTTATCAAGAATAGAACGGCAGGCGATTTTTCTCATATCCCGAAATACGAT
GAAGTTACTAGACAACTTATTGCAGCTGAAGAAAACATTGATTGGAAAACTAACGGTTTT
ACTTATATTATTATCACGGATGTTGACCCGGGACATGTACAATTTATGAAGGAGGGCTTT
GCTGTGTGGACGAGGCAGCTAGCTCATATTTACCACTATTATATCCATGGACCAGAAGGG
AATACAACATTATCATCAGGCAAACATCGCAATGCATCATCCTATATTGATATAAAGGTA
TCATTGCATGAAAGGGGTCGGAACAGCATTGTAGTTAACCTTCGTGACATCGACGATGAT
TTGGAGTCACGATACTTAAGAAGTNCCAGCGATACTCTCGAATTCAAAGTGACTACCGAT
GGAGGTGGTGGTGTAGTTGAAGGAAGCATCAGATATCACCCATTCTTGTTTGAAAAAGAA
ACATATCCTCTGGACTTGAATTCCGAAGATTCTGATGAAGAATCTGATGGGTATGATGCA
TTACCAGCCAGAGGAAGGCGGCCGATATTTGAATGCTTCTGGAATGGTCGACTGATCCCT
TATACTACAGTTCATGACTTTGAATGGTGTCGGATGCCAAAGAAAAGAGGAAGCATACCT
AATGAATGCTTTTATAGAATTTCTGGCTGTCTTTTTGCAAATGATGCATTTCAGGTCTCC
ACAAATAAATTAACTTTTATTGACTTGGAAGGGAAGTTGCGGGATCGGTCATGTGTGTTT
TCTCGGGTTATTGCAGGCCAAGTACAAAGAGCCCAAATTCAGAAACAATTTATGGAATGG
TTGAAAGATTGTCACGAGAAATATGACAAACAGGTGAAATTTCTCAATTTTATTGAATGC
TTCATGCGCTCGGATCCGTCTTCTCGCAAATCGGCATCGGGCACGTTTTCAGCATATAAA
GCAATCGAATGGGGAGGCAGAGTACACAAGAAAGGACAATTGGTTCGCACACAAAAAGTG
TACCCTGTTCTCTATGGCAGAATCCATAGGTTCATACTCCATGGAAGCCATGATGGAGAT
GTTTATGCTGTTGGTGGGGAAGTAGAGATTATACAGGAGCCATCTGCAATATATGGTGAA
CCAAAGCGCTTCCCGTTGTCTAAATTGGACAGAAGCACAAGCCCTGTGGATGTTCAACCT
TATGTCGATGATGAAGAGGGGAAATTGCCTTGTTATCTTGATCTCACATGGCCGGAAGGA
AATGAGATCAAGGATGGAGAATCGAGACAGTATAGCCTCACAATAGGTGCGATGAGGATT
GAGATTCATAATCGCAGAGGCGAGTCCATACAGAAACTACCCGCTACTGCTGGTGGAAAA
AAATTTCTCATTGAACAAACATTATTACACACTTCAAATGAAACTGGCCGTGTAAAGGAA
ATTGCAAGTCACATCACAGCGCACGGAAGATCATGGCCTTATTGGTTCAAAAAAATGGGT
GAGAATTTTAACAATCCGTCAAGTAGAGCGCATGAAGATGAATCAGTGCATACCGTTCCA
GAAAATTTGACAGAATTAGGGGCATACAAGATGCTAATACGAACTGTTCTTGCTGAAAGT
GGTGTTTATACTTATAAGAATGGAAGAAATCTGCCTCAGTTGGAAATCAATTTTGTGATA
AGTGAAGCACCTCCTTACAAGTTTATGGTTGGAATGCTTCAGTCGCCTCTATGTATCGGA
GAACCATTTGAGATTCCATTAGAGTTGCAAGACAAGGAGGGACGTTCCACTTGTGCTGTA
GGGGAATATACTGCTTATTTGGAATCTGATGAACTTGAAATAGCCCATTCTGGTTTGAGA
TACAAAGGAAGCTCAATCATACTTCACGATGTAGTCGCAGTAGGAGAAGTGGCCTCTCAA
CAAGGAATGGATTTTTCATTGACTGTGACTTTGCCTCAATTGGAAAGAGAATCTGAAACT
ATCAAGATTCGACTTCTTCCTGGACCTCCAAAAGCTCTCAAAATTAATTCTATTACAAGA
AATGGCATTGAAACAGACTGTTTTTCAAATGAGGAGACAAGTCACTATCGATTTGATATC
GAAAACAATTCGATGATAGCCCTCTCTGTATGTATCGTTGATATTGCTGGAAACGTCACA
TTGGAACGGAATGTAACTGTTCAAGCTAAGTTTCCCACCAGTTCTGGCATTGATAAAATG
ACTACTAACTGTGCAGATAGCGGCAGAGGAACATTGTCAGGTCAGATTTTCTTGAAAAAG
TTGAAAGATGAGAAAACGGTCACCGCAAAAATTTCAGCCTATGGAAAGAAAGAGATTATG
CCTATTTTGTGCGAGTTTCATGTCAAGCCATCAAGTGAAGTCAGTACCATTGAAGTGTTC
CATAGTGATCCATTTTCTGATTCTGACGAGCTGACAAGAGTTAAAACAGGATCAGACATA
TATTGGCAGGCGGGGGAAGTGATGTCAAACTTGAGCTTTCGTTTGCTTGATGAAGGAAGA
AGAGAAGTTGAATTGAGTAGATCTGTCTGTTCTTGCTTGAAGGTTAATTGGACAAAAAAT
GTCCCTCCTAGTGTATTTCGAAGTGGTACATTGCCGAACGTGAGAGCGCCAAAGAATGTT
TTGGACACCATGTACTGTGAGATTGTATATTCCGGACTCAATGTTGTACAGTTCAGTTTT
AACATAAAACCATTTGCTGGGGAGCCAGCGGCGATACGTTGTAATATACTCGGAAATAAG
ACAACACAGTTAGGAGTTATAAGAACCGACCCGATATCAGTTACGCTACAGGATGAACTT
GGAAATAAATTGAATGTCAAGCAATCTCAGTTGCCTCTCATCAGGGTGAATGCTGAAGGA
CTAGATGAGAGTTTGATAGAGAAAGTCATCGAGGATGGCTGCGTGTTGTTGACTAACGTT
CAGTTTAATCAAGGACCGTTAGGTGGACGAGAGATGTGCATATCCTATGAAGAAATGAAG
GAATCAGTCGTTATGAGAATCACTGCGGGAACACCAGTCACTTTGAAAGTTTTACGGTGG
CATGATGTATCTAAGCCCTACACTGTTTTGAGTGGTTCAAAAATGCAGGACTTGATAGAA
GTTCAGTTGATGGATGGTTGGGGATTTCCTGCACAACAGAAAGGGGTGAAAATTCTTCTT
GGAAAAGAGTCTGCCCTCAAACTTACCCCAAACCCNGGAATGCTTCTGACAGATGAAAAC
GGATACGCCAAGTTTAATCGATTTTCTGTCTCAGCAAAAAGGGGAGAGTATCATTTGCAA
CCACGGGCAGTGATTAACCGTACGTCTATTGAAGGTCCAAAACTCAAAATTGCAGTGCTA
CCTAACACAGAAACTCCCTGTGCTATAAAGGTCACTTACAACAATACCTCTTCTGTGCAA
GCTGGCACTAAATGGCCAGACTTTGACGTGACTGTCACATCTGAAGAAGGTTGCGCTGTC
ACATCTCAAGTTAATTTGTGTATGGCAATCTGGAAAGGTGAACCATTCAAAGATAAAGTC
GTACCGTCAAACGCCAAACTTCATCGAACTGATCAACTGGCAGTTGGGATTTATAAATTT
TCTGAAATTCCTGCTCCATCAGATAGTCATTCTTACTGTATTTGTTTTTGTCTTTGCGAA
TCGAGACACTCGAGGAATTTCACTATGTATAGTAAAGTTATTCAAATGTTTGTTGATCCA
GGTCCACCACATTTACTGCAACATGAGATTGANCCGGGCACTCCGACTGCTTCAAATACT
AATCTGGCCAAAACTATTGTAACACAACTTGCGCTCGTTCTTCATGATAAATATGGTAAT
ATGACTGGGAAAGACGTCGATACAGAAATCACGGTCTCAATTCAAGCATCAGATGAATGC
CTTCGATCGACCGAAATTCCGATCTTTGATAAAAACAAAGGGATTCTACAGTTTCACATG
CGCAATGGAAGAGTTCTTCTAAAGGATATATCCTTGAAAGAAAATTCTCCAGGCAGAGAT
GGAGCTCAATATACATTACTTTGTGAAGTCGCAACAGAAAAAATTGTACCGTATCAATTG
AAGTTCTTATTTTACAATGATGCCGTGAAGCAAAATCAAATGAGCATTTTAATCAAGAAA
CGAGACATGCTTAAAAATGCCATCGATTCATATCAAAGTCTGTTCACTCTTCACAAGACT
TTACTTGCCGAATTGAAAAAGACACTCAAAGAGGCTGAGAATAAGAAGAAACAAACATTA
AGAGATTTGCAAAAGTATAGCTTCCTTATTCCACCATCTCATTCTGTCGATGATATCGAA
GATATGATCATGGAGATGAAAAAAGAACGAGCTTTCTTACAAAACGAGCCAAGGCGGCGA
TGTTTATTGAAGGAATACCCTGACAAAAGCTCAGATATCCTCGGCAAAATTGGGCATTTA
GCATATGTTGAAGATGAAGATATCGCCACTGTGTTATCATGGCATATGATGGGAGATATG
GATTGCTTGATCACGTTTACCTCAGCTAAAGCAAAGGAAGTTCACAGAATGACCGGTGGC
TCACAACAAGTTCTCCCGTTGGATAGTATATACAGAAAGAATTTGCCAGACAATAGTCGG
CCTCTTCCTCACATGAAAAGAGGGGTGGCTGTTTCCAGAGTGAACGGAAATCCTGTGTTT
GCACGACAGTTGTTGCACTTTACGAAAGATCCAGAAAACTGCAAAGTTGTTTTTGGTATG
CTTTTGGGGGAGACACTGATTTTGGATGACCTTGAATCAGCCAATGAATACAGAAATCAA
GTTGTAAAATTCACCTACTGTCCTACCATATTAACGAGAACTGGAGAAAGAATTAGAAGC
AATGGAAAATTTGGTGGAAACCAAAATAGAGCATCGTCCATTGATAGGCTACGAGAGTTT
CTGGTCAAATTGAAAGACAGTGTCCAAGAAACAGATGCAGCTTTAATGGAATTGAACAGT
CATGAAGCATCGCTGGAAACTGATGAAATGTTAAAGAAAAAAATTGAACATCAAGAGGCT
TTAGGGAGACTGAGGGATATCGAATCAAAAATTCAAACGAGTTCCCCGCGTTCTCCAGCT
CCCAGACAAAAACTAACCGGATCAGCACCGCCTAAAAGAAGACGACGTTGAAATCTTGAA
ATATATTCTTTCGATTTACCGATTCCACGCTACCTTCGTTATTCCTTTTTAAAACCGTTA
CCTTGTTTTTATCGCCGCGTTTTTGTACTTGAAAATGCTCATATTGCCTTTTAATTGCTT
AGGATTTACCACTTTGTCCNATTCGTTCAACTTATACGTTATTACACCAGCAACAAAATA
ATGACAAAAATTCGCCGCCGGCTAATTCTTGTAGCGATATCGTTAGTACAGTAGTTATCA
ATTTCATCTTTACGCCCGCAAACGACCACCTTGACGCATTTGGTGCGATGA
| SUPERFAMILY |
HATPase_C_sf (IPR036890) - T[90-188] 1.2E-8 |
| Gene3D |
HATPase_C_sf (IPR036890) - T[109-302] 1.3E-13 |
| CDD |
HATPase_C (IPR003594) - T[123-176] 6.71182E-5 |
| SUPERFAMILY |
SMC_hinge_sf (IPR036277) - T[1710-1906] 1.83E-15 |
| SMART |
SMC_hinge (IPR010935) - T[1744-1871] 9.4E-9 |
| Pfam |
SMC_hinge (IPR010935) - T[1745-1870] 2.1E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SMHD1_HUMAN | 40.157 % | 1457 | 0 |