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TRANSCRIPT CARD

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  1. Clone 'cilv040o21' > 
  2. Transcript 'Cisavi.CG.ENS81.R17....' > 
  3. Clone 'cilv030p12' > 
  4. Transcript 'Boleac.CG.SB_v3.S710...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S710.g13470.01.t

Possible name(s)

CDH13; CDH2; CDH7

Gene model

Boleac.CG.SB_v3.S710.g13470

Location

S710 [24,056 / 25,868]

Sequences

Amino acid sequence

Length: 603

>Boleac.CG.SB_v3.S710.g13470.01.p
MGVVTNFSKIKLFLIAILYIVETDAEDSRAVVISEGANLGYAFWQLSSSSLNQSAVPYTI
TGDFTDEFAYDEKTGEIYLSGLLDYERQSKYTITATESRPQINSSGTPIIIDVIVGDVND
NVPVFILSSLNATMRYDDKIGHTVTTVVATDKDSGDNGXISYSILSNSXVPPSQSGDRFE
IGSNTGVVKLASYLDKFTNQYRFTVVASDNNGLPIHQTEAEVIVNVVSSNKHAPKIESLP
NITLSELTRPGTILHNNIITATDEDEGADKMVYFEIIDGNTDGTFXIWSVPSEDSTIGVM
TLLNGLDYESGVTXYTLTIKAYNKDASNYWDDTFSSTTTLNIIVTDANEPPIFLESPYSG
IITEGGALETEXPLIKALAXDSDFRGNQTITFSLSEAENWFEIHPQTGQITNIVAVDREA
PSVVDGVYQFEVIATDNYNGPHGVANATVNIMINDINDNPPMVVWDQNGANVTICDMPGN
DTVKIITAVDPDSVENGPKFFYEFANTVNDSLWGFRKVDDTTQAIVARFTNYGLSSQSQI
VELPFTITDSGKVPQTGTATLTVNVCKCKNKGEATCNDGARIIAPYLIVLTMITVFFTNL
LLL

Nucleotide sequence

Length: 1,812

>Boleac.CG.SB_v3.S710.g13470.01.t
ATGGGTGTGGTTACGAACTTCTCCAAGATTAAGTTGTTTCTAATAGCAATTCTTTACATT
GTTGAAACTGATGCTGAAGATTCGAGGGCAGTAGTAATATCAGAAGGGGCAAATCTCGGC
TACGCTTTTTGGCAACTCAGCTCCTCATCATTGAATCAAAGTGCGGTGCCCTATACCATC
ACTGGTGACTTCACCGATGAGTTTGCCTATGATGAAAAAACAGGCGAGATATATCTGTCT
GGACTGCTGGATTACGAAAGGCAATCGAAATACACAATCACCGCCACTGAGTCGAGGCCA
CAAATAAATTCAAGCGGAACACCCATCATTATCGATGTTATTGTGGGGGATGTAAATGAT
AACGTCCCTGTTTTTATTCTGTCTTCGTTGAATGCGACAATGAGATATGATGATAAAATT
GGACACACTGTCACGACTGTTGTAGCTACAGATAAAGATAGTGGCGACAACGGGANGATT
TCATACTCCATACTCTCTAACAGTGANGTTCCACCTTCCCAATCAGGAGATCGTTTTGAA
ATAGGTTCGAATACAGGCGTCGTGAAGTTAGCAAGCTATCTCGACAAGTTTACTAACCAG
TACCGGTTTACAGTGGTTGCATCTGACAATAACGGACTACCAATACACCAAACAGAGGCA
GAAGTAATCGTCAACGTCGTTAGTTCAAATAAACACGCTCCAAAAATCGAGTCATTACCA
AACATAACACTGTCGGAACTCACACGACCAGGCACAATATTGCACAATAACATAATTACT
GCTACTGATGAAGATGAAGGTGCTGATAAAATGGTGTATTTTGAAATCATCGATGGAAAT
ACNGATGGGACATTTGNAATTTGGTCAGTCCCATCTGAAGACTCGACCATCGGCGTAATG
ACGCTTTTGAATGGCTTGGATTATGAAAGCGGAGTGACTANCTACACATTAACAATCAAG
GCGTACAATAAAGACGCCTCAAATTATTGGGATGATACATTTTCCTCAACAACAACTTTG
AATATTATTGTAACTGATGCAAACGAACCTCCTATTTTCTTAGAATCACCATACTCGGGT
ATTATAACTGAAGGTGGCGCCCTTGAAACTGAGANTCCATTGATCAAAGCCTTAGCTGNA
GACTCGGACTTTAGAGGGAATCAAACCATTACATTTTCTCTATCAGAGGCTGAGAATTGG
TTTGAAATCCACCCCCAAACGGGTCAGATCACAAATATTGTTGCTGTGGATCGTGAGGCA
CCGTCTGTGGTAGATGGCGTTTATCAATTTGAAGTTATTGCTACTGACAATTACAACGGG
CCGCATGGTGTCGCTAACGCAACAGTTAATATCATGATAAATGATATCAATGATAACCCT
CCAATGGTAGTTTGGGATCAGAATGGCGCGAATGTTACCATTTGCGACATGCCAGGAAAT
GATACTGTAAAAATTATCACCGCTGTTGACCCCGACTCAGTTGAAAACGGGCCAAAATTT
TTCTACGAGTTTGCCAATACGGTTAATGACAGTCTGTGGGGTTTTCGAAAAGTTGATGAC
ACAACGCAAGCTATAGTTGCCAGATTTACAAATTACGGTCTATCATCACAATCTCAAATA
GTAGAATTGCCGTTTACGATTACAGACTCAGGTAAAGTGCCACAAACTGGGACGGCGACG
TTAACTGTTAACGTGTGCAAGTGCAAAAATAAGGGGGAAGCTACATGCAATGATGGTGCT
CGAATTATCGCTCCTTACCTGATTGTATTGACTATGATTACAGTGTTTTTTACTAACTTA
TTATTGTTGTGA

InterProScan

SMART
Cadherin (IPR002126) - T[46-123] 6.8E-4 - T[147-234] 7.6E-19 - T[259-352] 2.1E-8 - T[377-461] 7.5E-17 - T[486-573] 0.15
SUPERFAMILY
Cadherin-like (IPR015919) - T[48-125] 5.5E-10 - T[113-238] 1.04E-22 - T[241-346] 2.71E-12 - T[349-462] 5.37E-17 - T[456-566] 2.14E-9
PRINTS
Cadherin (IPR002126) - T[66-85] 1.1E-16 - T[125-154] 1.1E-16 - T[200-212] 1.1E-16 - T[215-234] 1.1E-16 - T[351-364] 1.1E-16 - T[445-462] 1.1E-16
ProSitePatterns
Cadherin_CS (IPR020894) - T[113-123] . - T[451-461] .
Pfam
Cadherin (IPR002126) - T[139-226] 1.8E-15 - T[241-344] 1.3E-8 - T[373-452] 1.5E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CADH2_HUMAN 28.86 % 166 2.27E-43
CADH7_HUMAN 30.944 % 179 6.95E-48
CAD13_HUMAN 29.182 % 158 4.02E-41