- Transcript 'Moocul.CG.ELv1_2.S49...' >
- Transcript 'KH2012:KH.C7.159.v1....' >
- Transcript 'KH2012:KH.C1.488.v1....' >
- Transcript 'Boleac.CG.SB_v3.S478...' >
- Transcript 'Boleac.CG.SB_v3.S78....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S78.g14077.01.t
Possible name(s)
ELAVL4; MSI2; NCL
Gene model
Location
S78 [97,517 / 110,770]
Amino acid sequence
Length: 1,063
>Boleac.CG.SB_v3.S78.g14077.01.p
MVQTPRKPRGRKVAAKSKTEVKPTPPQEPESNNEEKVDIRKVNARKPVTRSAKASQIISV
KVEPELMEVGNEDNVCEDEGEMDDDLKKAPEMNGKRSQDNTETVPQKKQKTDLKEDIVTL
SFTNLPEGISDEIFRQFLKSKDIELIASCANYNRCNAFVNVYISDEEKALSLDQEEWNGA
QISVSIASPKNQDYSKSDARTLHVKXLPYDAHDDDVKEIFQDVDQVRILTDKLTGKSRGI
AFVEFKSVASAXKAMETKDDFTLDGRQLLISRAGEVTKLPANTKILFVSGITQDMTEEEV
SKLFPDASEVRMVKTDTGINKSFAFVEFESEALAAKCCKSAKSGIETGHGSDKLIVRFAT
AQSKVLFVSGFTKDTTKKEVSTLFPDASEIRMVTKGTDKHFAFVEFESGDLASQYFKMAQ
DGIKTEDGTTNLVVMYAKDGDMGSKSSTSKTLFVRGVTEDMSKEELSKYFEGADQIRMIT
DNETRKNKPFAYVDFPSKDLATKCFTXAKDGIKTDDDSTIFYVSYATIPRGEEEVAAEDD
SELIKAGEGEEEKGKKSAAKPKKQVKPAPPPKEESSEEEEEESEEEETPKVKAKKPVKAA
AKVEEESEEDSDEEEDVKKSANGKSKKSQDEEEEEDDDDEEDEDDDEEESEEEEEKAPKK
AKVKPAAESMEVDDDEEDDDEEDDDEEEEEKPKKVQEKKGKRKQEDSETVPQKKQKTDTE
GDLVTMMFTNLPEGTTDNSFNKFLNSKGVQCKACRANYGRCKAFVDVATSDKGKALALNQ
LEWNDTEISVTEAEPRNQGSEGRDNSDRDTRTLFVKNLPYQASEDDLMGVFEDVEEVRFL
MDRNTGRPKGIAFVQFNDAASAEKVMGTKDEFELEGRQLFIDYTGSRASKPSGGRQSFGG
GRGGKFGGGDGRSGPSKTLFVKGVTEDMTKEQFAQYFEDASDVRMITDRDTGKNKFFAYV
EFESEDLAKKCYTSSHGGIEVEDGSTTLLVDYAKDRRSDGGXGRGGGGFRGRGGRGGGFR
GRGGRGGGFRGRGGRGGGFRGRGGRGGGGGGEGRKTTFNEDSD
Nucleotide sequence
Length: 3,468
>Boleac.CG.SB_v3.S78.g14077.01.t
TTACAGCTAGTCTAATCATTTGTAGGCCTATTACCGATATCTCCTACGGTACCTGTCAAC
GTCAATATGGTTCAGACCCCACGAAAGCCAAGAGGCAGAAAAGTAGCTGCGAAGTCGAAA
ACGGAAGTCAAGCCCACTCCTCCACAAGAACCTGAAAGCAACAATGAGGAAAAAGTTGAT
ATACGAAAGGTTAATGCAAGAAAACCTGTAACCCGCTCAGCCAAGGCTTCTCAAATAATA
AGTGTTAAGGTGGAGCCTGAACTTATGGAAGTAGGTAATGAAGACAATGTCTGTGAAGAT
GAAGGGGAAATGGATGATGATTTGAAAAAAGCTCCAGAAATGAACGGAAAAAGAAGTCAA
GACAATACTGAAACAGTACCACAAAAGAAACAGAAGACTGATTTAAAAGAGGATATCGTC
ACATTGTCGTTCACCAACTTACCAGAAGGCATCTCCGACGAAATATTCCGCCAATTTTTG
AAGAGCAAAGATATCGAGTTGATTGCATCCTGTGCCAATTATAACAGATGCAATGCTTTC
GTTAATGTGTACATTTCTGATGAAGAAAAAGCTCTTAGTCTTGATCAAGAAGAGTGGAAT
GGCGCTCAGATTTCAGTATCGATAGCTTCACCGAAAAACCAAGATTACTCAAAAAGTGAT
GCAAGAACGTTGCATGTAAAAAANCTTCCATACGATGCACATGACGATGATGTGAAAGAG
ATATTTCAAGATGTGGATCAAGTTAGAATCCTCACCGATAAATTGACCGGAAAGTCCAGG
GGGATAGCTTTTGTGGAATTCAAAAGTGTGGCATCTGCAGANAAGGCCATGGAAACGAAA
GATGACTTCACATTGGACGGTCGACAACTGTTGATCAGCCGAGCGGGTGAAGTTACAAAG
CTACCAGCAAACACAAAAATCCTGTTTGTAAGTGGCATCACACAAGACATGACAGAAGAA
GAGGTCTCCAAACTTTTTCCAGATGCATCAGAAGTCAGGATGGTCAAGACAGACACAGGG
ATCAACAAATCCTTTGCATTTGTTGAATTTGAATCCGAGGCACTTGCTGCAAAATGCTGC
AAATCTGCTAAAAGTGGAATTGAAACAGGACACGGTTCCGATAAGTTAATTGTTCGATTC
GCCACTGCCCAGTCGAAAGTTTTGTTTGTAAGTGGCTTCACAAAAGATACGACCAAGAAA
GAAGTTTCTACACTCTTTCCGGATGCATCAGAAATCAGGATGGTCACAAAAGGGACAGAC
AAACACTTTGCATTCGTTGAATTTGAATCAGGGGACCTTGCTAGTCAATACTTCAAGATG
GCTCAAGACGGAATTAAAACAGAAGATGGTACCACTAATTTAGTTGTTATGTATGCCAAA
GATGGTGACATGGGTAGCAAATCAAGTACTTCGAAAACATTATTTGTACGGGGTGTGACA
GAAGACATGAGCAAAGAAGAGCTCTCTAAATACTTTGAAGGCGCCGATCAAATCAGGATG
ATCACTGACAACGAGACTCGGAAGAACAAACCCTTTGCGTACGTTGACTTTCCGTCTAAA
GATCTTGCCACGAAATGCTTTACATNGGCCAAGGACGGAATCAAAACTGACGATGATTCC
ACTATTTTCTATGTCTCGTATGCCACAATACCACGTGGTGAGGAAGAGGTCGCCGCGGAG
GACGATTCGGAGCTAATCAAGGCCGGGGAGGGCGAGGAAGAGAAAGGCAAGAAATCTGCG
GCTAAGCCAAAGAAACAAGTCAAGCCGGCTCCTCCACCTAAAGAAGAAAGCAGCGAGGAA
GAAGAAGAGGAAAGTGAAGAAGAGGAAACACCAAAAGTTAAAGCCAAAAAGCCAGTGAAA
GCTGCAGCCAAAGTGGAAGAAGAAAGTGAGGAGGACTCAGACGAAGAGGAAGATGTGAAG
AAATCAGCCAACGGTAAATCTAAGAAATCACAGGATGAAGAAGAGGAAGAAGATGATGAT
GACGAAGAAGATGAAGATGATGACGAAGAGGAAAGTGAGGAAGAGGAAGAAAAAGCACCT
AAGAAGGCAAAAGTAAAGCCTGCCGCTGAATCAATGGAAGTTGACGATGATGAAGAAGAT
GACGATGAAGAGGATGATGATGAGGAGGAGGAAGAGAAACCAAAAAAAGTTCAAGAAAAA
AAAGGAAAAAGAAAACAGGAGGACTCTGAGACAGTACCACAAAAGAAACAGAAAACAGAC
ACTGAAGGAGACCTCGTCACAATGATGTTCACTAACTTGCCAGAAGGCACTACAGACAAC
TCGTTCAACAAGTTTTTGAACAGTAAAGGAGTTCAGTGTAAGGCGTGCCGTGCTAATTAT
GGTAGATGCAAAGCTTTCGTTGACGTTGCCACTTCAGATAAAGGAAAAGCTCTTGCCCTC
AATCAATTAGAGTGGAATGACACAGAGATCTCAGTAACAGAAGCTGAACCAAGAAATCAA
GGCAGTGAAGGCAGAGATAATTCAGACCGCGATACAAGAACGTTGTTTGTGAAAAATCTT
CCCTACCAAGCCAGTGAAGATGATTTGATGGGTGTTTTTGAAGATGTTGAAGAAGTTAGA
TTCCTAATGGATAGGAATACGGGACGACCAAAGGGAATTGCTTTTGTGCAATTCAACGAT
GCAGCATCAGCAGAAAAAGTGATGGGAACCAAAGATGAATTTGAATTGGAGGGCCGTCAA
TTATTCATTGACTACACGGGTAGCCGGGCTTCCAAGCCATCTGGCGGGCGTCAAAGCTTC
GGCGGCGGCCGGGGTGGTAAATTTGGAGGTGGAGATGGTAGATCAGGTCCTTCGAAGACC
TTGTTCGTTAAGGGTGTCACGGAGGACATGACCAAGGAACAATTCGCCCAATACTTTGAA
GATGCTTCCGATGTCAGGATGATCACCGACAGAGACACGGGAAAGAATAAATTCTTTGCA
TACGTTGAATTTGAATCTGAGGATCTTGCCAAGAAATGCTACACTTCGTCTCATGGCGGA
ATTGAAGTTGAAGATGGTTCCACTACTTTACTAGTTGATTATGCGAAAGATCGTCGTAGC
GATGGCGGCNGTGGACGTGGTGGTGGTGGATTCAGAGGAAGAGGAGGCCGTGGTGGCGGA
TTCAGAGGCCGAGGTGGACGTGGCGGTGGATTCAGAGGCAGAGGCGGTCGAGGTGGCGGA
TTCCGTGGAAGAGGTGGACGCGGCGGCGGCGGTGGTGGTGAAGGCAGAAAGACCACATTC
AATGAAGATTCCGATTGAGAATTTTATGAAGTCACCCCAAATTTTTATAAATAAGTTGTA
ACGATGGGAGTAGTACACTGCCATGCCGCTCAACCAACTCGTTACTGGTTTAGAATTTGG
TGGCGGCGCACATGGACAAATGGAGCTTGTGCTGGCCTTTTCACGTGCTGATCGTGTGGA
GCGATTTGTAATTTTTTGGCTGGTTTTAATGAAAGCCCTACTGAAATA
| SMART |
RRM_dom (IPR000504) - T[119-185] 0.99 - T[201-271] 1.3E-19 - T[285-357] 1.4E-7 - T[365-435] 0.0036 - T[451-524] 1.7E-7 - T[725-791] 2.5 - T[812-882] 3.7E-20 - T[918-991] 1.3E-14 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[190-278] 3.8E-20 - T[279-360] 8.9E-12 - T[361-440] 1.5E-7 - T[441-531] 3.1E-11 - T[666-802] 3.8E-6 - T[803-910] 6.0E-23 - T[911-1002] 5.5E-16 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[198-340] 2.79E-30 - T[360-441] 3.57E-8 - T[436-506] 4.3E-11 - T[805-914] 1.61E-26 - T[914-1027] 1.32E-19 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[200-275] 16.517 - T[284-361] 12.782 - T[364-439] 11.128 - T[450-528] 11.691 - T[811-886] 16.944 - T[917-995] 13.481 |
| Pfam |
RRM_dom (IPR000504) - T[203-268] 1.6E-13 - T[286-340] 1.4E-8 - T[366-413] 3.2E-5 - T[452-505] 6.7E-10 - T[813-879] 3.3E-13 - T[919-977] 9.3E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NUCL_HUMAN | 31.595 % | 117 | 1.14E-26 |