- Transcript 'Phfumi.CG.MTP2014.S3...' >
- Transcript 'Moocci.CG.ELv1_2.S52...' >
- Transcript 'Boleac.CG.SB_v3.S83....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S83.g14600.01.t
Possible name(s)
PCDH18; PCDHA9; PCDHGC3
Gene model
Location
S83 [274,995 / 281,524]
Amino acid sequence
Length: 676
>Boleac.CG.SB_v3.S83.g14600.01.p
MHTAKSQLTPRTHRMEFPEEQDPGTTVANLPQMFNVRFNDLPGRYFEIIGQRMKVGNKVV
MSDGKWLKIDRYTGVISVDEPVDRETECGEDPDLECVILLQTAMLPQTHFRLQNFELVVT
DINDHSPKFPPSVKNKIINLNISEDTRVMSTINIDRFMPTDEDIGDNADIHYSMSRNDYF
VVNQYQDDTGAPHLELVLQSPLDFEVTPRIKVDMTATDQGSPIKRSTQVALHITVVDVND
NAPVFDESVYDLQLQENIPIGHVIATVHATDLDQGAFGQVRYFVSHTGNSAASRRFVKVD
PRSGEVKLRSSPDREAKKMMKVVIGAQDSPGLPNKKIGRTILMIHITDVNDNSPRIDVNI
IIKGPDDAEEAELGTYIAHVSATDADHGEAGQVTLSVASIRKLPSGTDSNTRIGLARDNY
FVLRDNLISTNRRLDRETEDKYMIQIKACDGGTPQRCAFKNVKVIILDSNDHAPKFLSTN
HVITIPENMEIGSVIDTVVAKDLDSTRTPALALLESGRFGQSRNGKVRYSLQGGGSVFAI
DSTSGRIKLVGVLDYEIRSVWKIVVTAKDLGDPPQKSNLTITVAVTDINDHRPIFIKPEK
RNTTVYASILDDRTIIRIKTVDRDAGDNANVWYSIARENGADRSRNFLIDPITGSLRLNM
SNKLTGLLGEHTLEIK
Nucleotide sequence
Length: 2,028
>Boleac.CG.SB_v3.S83.g14600.01.t
ATGCATACAGCCAAGTCTCAACTCACCCCTAGAACGCATCGAATGGAGTTTCCTGAAGAA
CAAGATCCGGGAACGACTGTGGCGAATTTACCACAGATGTTCAACGTTCGGTTCAACGAT
TTGCCTGGAAGATATTTCGAAATCATTGGACAACGGATGAAAGTCGGAAATAAAGTTGTA
ATGTCCGATGGCAAATGGTTGAAAATAGATCGATATACTGGAGTCATTTCTGTTGACGAG
CCTGTTGACCGAGAAACTGAGTGCGGCGAAGATCCCGACCTGGAATGCGTAATCTTGCTG
CAGACGGCCATGCTTCCACAAACTCATTTCCGACTTCAAAACTTTGAGCTTGTCGTCACT
GACATCAACGATCATTCACCAAAATTTCCACCGTCGGTAAAAAATAAAATCATTAATCTC
AATATTAGCGAAGATACTCGCGTGATGTCAACAATCAATATTGACCGATTTATGCCCACG
GATGAGGATATTGGCGACAATGCCGACATTCACTACAGCATGTCAAGAAACGATTATTTT
GTCGTTAATCAATACCAAGACGATACGGGGGCTCCTCATTTAGAGTTGGTTCTCCAGTCT
CCCTTAGATTTCGAAGTTACGCCGAGAATCAAAGTTGACATGACAGCTACCGATCAGGGA
TCTCCCATAAAAAGATCGACTCAAGTAGCGTTACATATCACAGTGGTGGACGTAAACGAC
AATGCTCCAGTGTTCGACGAATCTGTGTACGACTTGCAATTGCAAGAAAATATTCCAATC
GGGCACGTTATTGCAACTGTTCATGCAACTGATTTAGACCAAGGTGCCTTCGGACAAGTA
CGGTACTTTGTTTCGCACACTGGCAATTCAGCGGCGTCCCGCAGATTCGTAAAAGTGGAC
CCGCGGTCTGGTGAAGTGAAATTACGATCATCTCCAGATAGAGAAGCGAAAAAAATGATG
AAAGTCGTCATTGGTGCGCAAGATTCTCCGGGTCTTCCTAACAAGAAAATCGGAAGAACG
ATACTTATGATTCACATAACTGATGTCAACGACAATTCTCCTCGAATCGACGTCAATATT
ATCATCAAAGGTCCCGATGACGCAGAGGAAGCAGAACTTGGCACTTACATCGCTCACGTG
AGCGCGACTGATGCTGATCATGGAGAGGCTGGACAAGTGACGCTGTCAGTCGCTTCGATA
AGGAAACTTCCGAGCGGAACGGATTCCAACACCAGAATTGGCCTTGCAAGAGATAATTAC
TTCGTGTTGAGGGATAACTTGATATCTACCAACCGCCGATTAGACAGAGAGACGGAAGAC
AAGTACATGATACAAATAAAAGCCTGCGATGGAGGAACACCTCAAAGATGCGCCTTCAAG
AATGTAAAGGTGATAATTCTTGACTCGAACGATCATGCACCAAAATTCCTGTCGACCAAC
CACGTGATCACCATTCCGGAAAATATGGAAATAGGGAGTGTTATTGACACGGTCGTGGCA
AAGGATCTAGATTCAACACGCACTCCAGCTTTGGCACTGTTGGAGAGCGGACGGTTTGGA
CAGTCAAGAAACGGGAAGGTGCGATATTCACTTCAAGGAGGAGGGTCAGTGTTTGCAATC
GACTCTACCTCTGGACGCATCAAGTTAGTAGGAGTGCTGGACTATGAAATTCGATCAGTA
TGGAAGATAGTGGTTACTGCTAAAGATTTGGGGGATCCTCCACAAAAGTCGAATCTTACT
ATTACCGTCGCAGTTACCGACATAAACGACCATCGTCCAATTTTTATCAAGCCTGAAAAG
AGAAATACTACGGTGTACGCAAGTATCCTGGATGACAGGACCATAATAAGAATTAAGACC
GTTGATCGCGATGCTGGGGACAATGCAAATGTATGGTACTCCATTGCGCGGGAAAATGGT
GCTGACAGAAGTCGAAACTTCCTGATAGATCCTATTACGGGAAGCTTGCGATTGAATATG
AGCAATAAACTGACGGGACTCCTCGGAGAGCATACGCTCGAAATTAAG
| Pfam |
Cadherin_N (IPR013164) - T[15-102] 7.1E-7 |
| SMART |
Cadherin (IPR002126) - T[34-127] 0.019 - T[157-243] 1.0E-17 - T[267-354] 2.2E-13 - T[380-474] 2.4E-18 - T[515-593] 7.5E-20 |
| PRINTS |
Cadherin (IPR002126) - T[65-84] 5.5E-31 - T[245-274] 5.5E-31 - T[319-331] 5.5E-31 - T[335-354] 5.5E-31 - T[474-487] 5.5E-31 - T[543-569] 5.5E-31 - T[577-594] 5.5E-31 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[123-245] 7.71E-15 - T[233-361] 5.0E-25 - T[349-468] 2.43E-14 - T[464-598] 3.0E-24 - T[588-660] 1.23E-9 |
| Pfam |
Cadherin (IPR002126) - T[154-235] 6.2E-7 - T[250-346] 8.5E-11 - T[369-466] 1.7E-8 - T[484-586] 1.6E-11 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[233-243] . - T[464-474] . - T[583-593] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 31.364 % | 251 | 1.38E-71 |
| PCDGK_HUMAN | 31.529 % | 254 | 2.04E-73 |
| PCDA9_HUMAN | 31.79 % | 251 | 3.16E-72 |