- Transcript 'KH2012:KH.C1.263.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S44...' >
- Transcript 'KH2012:KH.C12.200.v1...' >
- Transcript 'Boleac.CG.SB_v3.S845...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S845.g14699.01.t
Possible name(s)
ASCC3; HFM1; SNRNP200
Gene model
Location
S845 [24,674 / 37,450]
Amino acid sequence
Length: 2,140
>Boleac.CG.SB_v3.S845.g14699.01.p
MADASARSLQYEYKANSNLVLQADRSLIDRRPRDEPTGEVLSLQGKIGVTKMGDRAQRSK
PPMMDERRAKRHKRDEDQRASVKLKGATLLSEAVDEMVNILYKPKTKETREAYEILLSFI
QAAIGDQARDIICGAADEVIMVLKNEKLRDKERRKEIQSLLGSLEDTRYFVLVNLGKKIT
DFGSDKDAETADDNIDETYGVNVQFESDEEEDDQENRYGEVQDDSDAENDEEDGDEANVN
MVVSARLTNEDGGVNVAKSRELHPRDIDAYWLQRNLSKVYDDAIISQTKSEEVLDILKTA
TDDLQCENQLVMLLGFDQFDFIKILRQHRQMVLYCTLLASAQSEHDRKQIEMKMSSDPLL
SNILQQLNETEKEDIIKEEQQRRERMRRSKLDADLEAMETDQGDDGVKPSKGVDLDDIIF
EQGSHLMANKKCQLPDGSYRKQRKGYEEVHVPALKPKPFTDKEKLIAIDSLPKYAQAAFE
GFKSLNRIQSKLSKTALESDENILLCAPTGAGKTNVALLTMLREIGKHINADGTINVNEF
KIIYIAPMRSLVQEMVGSFGKRLAAYGIKVSEMTGDHQLCKEEINATQVIVCTPEKWDIV
TRKGGERTYTQLVRLLIVDEIHMLHDGRGPVLEAVIARTIRAIETTQEDVRLVGLSATLP
NFEDVATFMRVDPSKGLFFFDNSFRPCPLEQQYIGITEKKAIKRFQVMNEIVYEKVVDNA
GKNQVLIFVHSRKETGKTARSIRDMCLENDTLGHFLREGSASTEVLRTESEQVKSLELKD
LLPYGFAIHHAGMSRVDRTLVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQVYSP
EKGRWVELGALDVLQMMGRAGRPQYDTKGQGVLITSHTELQYYLSLLNQQLPVESQMVAK
LADMLNAEIVLGNIQNIKDAVNWLGYSYLYIRMLRQPTLYSISHDTLKSDPFLQQHRVDL
LHSAANLLDKNNLIKYDKKTGHFQVTDLGRIASHYYCSYQSMATYNQLLKPTLSEIELFR
VFSLSSEFKYITVREEEKLELQKLLERVPIPVKEGIDEPTAKINVLLQTYISQLKLEGFA
LMADMVYVTQSAGRLMRAIFEIVLHKGWAQLTDKCLALCKMIQRRMWQSMTPLRQFKKVP
DEVIKKIEKKNFGWERFYDLNHNEIGELVRIPKMGRTLHKLIHQFPKMELSVHIQPITRS
TLRVELTVTPDFQWDEKTHGQSQAFWIFVEDVDSEIILHHEYFLLKNKYATDEHIVNFFV
PVFEPLPPQYFIRIVSDSWLSSETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPE
FEALYEGKFPSFNPIQTQVFNALYNNDDNIFIGAPTGSGKTVCAEFAILHAFNTNLDAKC
VYVTPMDSLAXIVYEDWKKFERGLXKRVVLLTGETSTDLKLIAKGNIVVATPEKWDVLSR
RWKQRKNVXNVSLFIVDEIHLLGGEAGPELEIICSRMRYISSQLERRIRIVALGSSLANA
KDVAQWLGCSSTHTFNFHPNVRPVPLEIHIQGFNISHAQSRLLSMSKPVYNAAMKHSPKK
PVIVYVTSRKQAKLSAIDMLTFAAADGQPQKFLHCKEEDLKPYLEHVDDETLKECIVNGV
AYIHDGTTPKERRMVEQLFASGAVQLLVASRSLCWGLNVSANLVIVMDTQYYNGKIHAYV
DYPVTDVLQMIGRANRPLKDEEGKCVIMCQGSKKDFFKKFIYEPLPVESHLDHCLHDHFN
AEIVTKTIENKQDAVDYMTWTFLYRRMTXNPNYYNLQGISHRHLSDSLSELVENTLSDLE
QSKCISIEDEMDVSPLNLAMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYES
IPIRHREDATMKQLVEKVPYKPQNIRFSDPHIKTNLLLQAHLSRLQLPAELQSDTECILA
KSVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFGPGLIKRCSEK
DIESVFDILEMEDDDRNSLLGLLPEQMADVARFCNRYPNIELTYDVQEQENLRVGMPVVV
VVTLEREDELSGPVIAPFFPQKREEGWWVVVGDPKSNSLISIKRLTLQQKAKVKLDFVPP
SAGQHSYTLYFMSDAFMGCDQEYKLDINVQSEEESGSESD
Nucleotide sequence
Length: 6,788
>Boleac.CG.SB_v3.S845.g14699.01.t
GAAGTAACATCACTTAACCGTCAAATACTGACACAATGGCGGATGCCTCGGCGCGGTCAC
TTCAATATGAGTACAAAGCAAACTCTAATCTTGTGCTACAAGCTGACAGATCTCTTATAG
ATCGCAGGCCAAGAGATGAGCCAACCGGTGAGGTTCTGTCATTGCAAGGGAAAATTGGTG
TAACCAAGATGGGAGACCGAGCACAAAGGTCAAAGCCCCCAATGATGGATGAGAGGAGAG
CCAAACGCCACAAGCGTGATGAGGACCAACGGGCTTCAGTCAAATTGAAAGGTGCCACTT
TGCTTTCAGAAGCAGTAGATGAAATGGTTAACATTTTGTACAAACCCAAAACAAAGGAGA
CAAGAGAAGCATACGAAATTTTGCTCAGCTTCATTCAAGCTGCAATTGGTGATCAGGCAA
GGGATATCATATGTGGTGCTGCGGACGAAGTCATTATGGTTCTGAAGAATGAAAAATTGC
GAGATAAAGAGAGACGGAAAGAGATTCAATCCCTTCTTGGATCTTTAGAAGACACCAGAT
ATTTTGTTCTAGTTAATCTTGGGAAAAAGATAACAGATTTTGGTTCAGACAAGGATGCCG
AAACTGCTGATGACAATATTGACGAAACATATGGAGTGAATGTTCAGTTTGAATCTGATG
AAGAGGAGGACGATCAAGAAAATAGATATGGTGAAGTTCAAGATGACTCAGATGCAGAAA
ATGACGAAGAGGATGGAGACGAAGCCAATGTGAATATGGTAGTCTCAGCAAGGCTGACGA
ACGAAGATGGCGGCGTAAATGTAGCGAAGAGCAGGGAATTGCACCCTAGAGATATTGATG
CTTACTGGCTACAAAGAAATCTGAGTAAGGTCTACGATGATGCTATCATATCACAGACAA
AGTCTGAGGAGGTTCTGGATATCTTGAAAACAGCNACTGACGATTTGCAATGTGAAAATC
AGCTTGTAATGCTTTTGGGATTTGATCAGTTTGACTTTATCAAGATCTTGAGACAACATC
GCCAGATGGTTTTGTATTGCACACTGCTTGCAAGTGCTCAGAGTGAGCATGACCGGAAAC
AAATTGAAATGAAAATGTCAAGCGATCCACTACTGTCGAACATCCTTCAACAGCTTAATG
AAACAGAAAAAGAAGATATTATCAAAGAAGAACAACAGCGCAGAGAAAGAATGAGAAGAA
GCAAATTGGATGCAGATTTAGAAGCCATGGAAACTGATCAAGGTGATGATGGTGTGAAAC
CTAGTAAAGGAGTTGATCTAGATGACATCATCTTTGAGCAGGGATCCCATCTTATGGCTA
ACAAAAAGTGCCAATTGCCAGATGGATCGTATCGAAAGCAACGCAAAGGCTATGAAGAAG
TCCATGTACCGGCGCTAAAACCAAAGCCTTTCACTGATAAAGAAAAATTAATTGCCATTG
ACTCATTACCAAAGTATGCTCAGGCTGCATTCGAAGGGTTTAAAAGCTTGAATCGCATCC
AAAGTAAGCTTTCCAAAACTGCTCTGGAAAGTGATGAAAACATACTACTCTGCGCTCCAA
CGGGGGCCGGTAAAACAAATGTTGCGTTACTGACAATGCTTCGGGAAATAGGCAAACACA
TCAATGCTGATGGCACTATCAATGTGAATGAATTTAAAATCATATACATAGCACCAATGC
GGTCACTTGTACAGGAAATGGTTGGGAGTTTTGGTAAACGTCTGGCAGCATATGGCATTA
AAGTTAGTGAAATGACTGGAGACCACCAGCTTTGCAAAGAAGAGATAAATGCCACTCAAG
TCATTGTATGCACACCAGAGAAATGGGATATTGTCACCAGAAAAGGGGGAGAGCGTACGT
ATACCCAACTGGTGCGACTATTGATAGTGGATGAAATCCATATGTTGCATGACGGGCGCG
GGCCAGTTCTAGAAGCAGTCATTGCTCGTACTATTCGGGCTATTGAGACTACGCAAGAAG
ACGTTAGATTGGTTGGATTATCAGCTACTCTTCCAAATTTCGAGGATGTTGCAACATTCA
TGAGGGTCGATCCATCCAAGGGTTTGTTCTTTTTTGACAACAGTTTCAGACCTTGCCCCT
TGGAACAGCAGTACATTGGCATCACTGAAAAAAAGGCCATAAAGCGATTCCAAGTCATGA
ATGAAATTGTCTATGAAAAGGTTGTTGATAATGCTGGAAAAAACCAGGTCTTGATTTTTG
TGCATTCCAGGAAAGAAACGGGAAAAACTGCCCGTTCAATTCGTGATATGTGCCTTGAAA
ATGATACTTTGGGGCACTTTTTGAGGGAGGGGTCCGCCTCCACTGAAGTACTGCGAACAG
AGTCTGAGCAAGTGAAAAGTCTGGAACTGAAGGACTTGCTACCATATGGATTTGCAATTC
ATCATGCTGGAATGTCAAGAGTTGATAGGACTCTGGTAGAAGATTTGTTTGCTGATCGAC
ACATTCAAGTTTTGGTCTCCACGTCAACTTTGGCGTGGGGTGTGAACCTTCCTGCTCATA
CTGTAATAATTAAAGGGACACAAGTATACAGTCCTGAGAAGGGGAGATGGGTAGAGCTCG
GTGCACTAGACGTTTTGCAAATGATGGGACGTGCTGGAAGACCGCAGTATGACACTAAAG
GACAGGGTGTGCTGATTACATCTCACACCGAACTTCAATATTACTTGTCTCTTCTCAATC
AACAACTGCCTGTTGAGAGCCAAATGGTTGCAAAACTAGCTGACATGCTGAATGCAGAAA
TCGTACTGGGCAACATTCAAAACATCAAAGATGCGGTCAATTGGCTTGGCTACAGTTATT
TATACATCAGAATGCTTCGTCAACCCACACTGTATTCCATTAGCCACGACACCCTTAAAT
CCGACCCATTTCTCCAGCAGCACCGTGTCGATTTGCTACATTCGGCTGCAAATTTGTTAG
ATAAAAATAATTTGATAAAATACGATAAGAAGACTGGTCATTTTCAAGTTACCGATCTTG
GTCGTATTGCCAGTCATTACTACTGCTCCTACCAAAGCATGGCTACGTATAATCAACTTC
TCAAGCCAACACTGAGTGAAATTGAGCTATTCCGAGTCTTTTCACTTTCGTCTGAGTTCA
AATACATTACAGTTAGAGAAGAGGAGAAACTTGAGCTGCAAAAACTACTTGAAAGAGTTC
CTATTCCCGTGAAGGAGGGGATTGATGAGCCAACAGCAAAAATTAATGTATTGTTGCAAA
CATACATTTCTCAGTTGAAGCTGGAAGGCTTTGCTCTCATGGCTGATATGGTCTATGTTA
CACAGTCTGCTGGCAGGTTAATGCGGGCAATTTTTGAAATAGTTCTTCACAAAGGATGGG
CTCAACTCACTGATAAGTGTCTTGCTTTGTGCAAAATGATTCAACGCCGTATGTGGCAAT
CTATGACCCCGTTACGGCAATTCAAGAAAGTGCCTGATGAAGTTATAAAAAAGATTGAAA
AAAAGAATTTTGGTTGGGAGAGATTTTATGATCTTAATCACAATGAGATCGGGGAACTTG
TTAGGATACCTAAAATGGGTAGGACCTTGCACAAATTGATTCATCAGTTCCCCAAAATGG
AATTGTCCGTGCATATTCAGCCAATCACAAGATCTACTTTACGTGTTGAGTTGACTGTTA
CCCCTGATTTCCAGTGGGATGAGAAAACTCATGGACAATCACAAGCGTTTTGGATATTTG
TGGAGGATGTTGATAGTGAGATCATCTTGCATCATGAGTACTTCTTACTCAAAAACAAGT
ATGCCACAGATGAACACATAGTGAACTTTTTTGTGCCAGTCTTTGAGCCTCTCCCTCCAC
AATATTTTATCCGCATCGTATCTGACAGCTGGCTATCCTCGGAAACACAACTTCCTGTTT
CGTTTAGGCACCTGATTCTACCTGAAAAATATCCTCCCCCTACTGAACTATTGGACTTGC
AACCTCTCCCTGTAACGGCGTTGAGAAATCCTGAATTCGAAGCACTCTATGAAGGCAAGT
TCCCGTCTTTTAATCCAATTCAAACACAGGTGTTCAATGCACTGTACAACAACGATGATA
ATATCTTCATTGGGGCTCCTACAGGAAGTGGTAAAACTGTTTGTGCGGAATTTGCTATTT
TGCATGCATTCAACACAAACCTGGATGCTAAATGTGTTTATGTGACCCCAATGGATTCTC
TCGCACANATCGTTTATGAAGACTGGAAAAAGTTTGAAAGGGGCTTGNGCAAACGTGTTG
TGTTGCTGACAGGAGAAACTAGCACTGATCTGAAACTTATTGCAAAGGGCAATATAGTTG
TAGCCACACCTGAAAAGTGGGATGTTTTGTCGAGACGTTGGAAACAAAGAAAAAATGTGC
ANAACGTTTCNTTATTCATAGTTGATGAAATTCATTTGCTCGGAGGTGAAGCTGGTCCTG
AGTTAGAGATCATCTGCTCACGTATGAGATACATCTCTTCTCAGTTGGAAAGACGAATCA
GAATTGTTGCTCTGGGATCATCACTCGCTAATGCGAAAGATGTTGCACAATGGCTTGGGT
GCTCATCAACACATACCTTCAATTTCCACCCCAATGTTAGGCCGGTGCCGCTTGAGATTC
ACATTCAAGGCTTCAACATAAGCCATGCTCAATCTCGGTTACTTAGTATGTCTAAACCTG
TGTATAATGCAGCGATGAAGCATTCGCCAAAAAAACCTGTTATTGTCTATGTCACTTCAA
GGAAACAAGCCAAACTGAGTGCTATAGACATGCTAACATTTGCAGCAGCAGATGGGCAGC
CACAAAAGTTTTTGCATTGCAAAGAAGAAGACTTGAAGCCATACTTAGAGCATGTGGATG
ATGAAACTCTGAAAGAATGTATTGTAAATGGAGTGGCATATATCCACGACGGCACCACAC
CCAAGGAACGGCGCATGGTTGAGCAACTTTTTGCTTCAGGGGCAGTCCAATTACTGGTAG
CTTCTAGAAGTTTATGTTGGGGGCTTAATGTTTCTGCCAATCTTGTCATCGTTATGGATA
CACAATATTACAATGGCAAAATTCATGCATATGTGGACTACCCTGTTACCGATGTGCTGC
AAATGATTGGACGTGCCAACCGGCCACTCAAAGATGAGGAAGGAAAGTGTGTTATAATGT
GTCAGGGATCTAAAAAAGATTTCTTCAAAAAGTTCATATACGAACCTCTTCCTGTGGAAT
CACATCTTGATCATTGCCTCCATGACCATTTTAATGCTGAAATAGTAACAAAAACCATAG
AAAACAAGCAAGATGCTGTGGATTATATGACNTGGACCTTCCTATACCGGAGAATGACAC
ANAATCCNAACTACTACAATTTGCAGGGTATTTCTCATCGTCATCTCTCGGACAGTTTAT
CAGAGCTTGTAGAGAATACCCTGTCTGATCTGGAACAATCCAAGTGCATTTCAATAGAAG
ATGAGATGGATGTATCGCCTTTGAACTTGGCGATGATTGCAGCATATTACTACATCAACT
ACACTACAATTGAGCTGTTCAGCATGTCTCTGAATGCAAAAACCAAGATTCGCGGACTCA
TTGAAATCATAAGCAATGCTGCCGAATATGAATCAATTCCTATCAGACATCGAGAGGATG
CAACAATGAAACAGTTGGTTGAAAAAGTGCCTTACAAGCCACAAAACATCCGGTTTTCAG
ATCCTCATATCAAGACCAATCTACTCCTGCAGGCACACTTGTCAAGATTGCAATTGCCAG
CGGAATTACAATCTGACACCGAATGTATTCTTGCCAAGAGCGTTCGATTGATACAGGCTT
GTGTAGATGTTCTTTCATCGAATGGTTGGTTATCTCCAGCTTTAGCAGCTATGGAACTTG
CACAAATGGTAACACAAGCTATGTGGAGCAAGGACTCCTACTTGAAGCAACTGCCTCATT
TTGGTCCAGGATTAATAAAAAGATGCAGTGAAAAGGACATTGAAAGTGTCTTCGATATTT
TGGAGATGGAAGATGATGACAGAAACAGTCTCCTTGGGCTTTTGCCTGAACAAATGGCAG
ATGTTGCAAGATTTTGCAATCGCTATCCCAACATAGAGTTAACATATGATGTTCAGGAAC
AAGAAAATCTGCGTGTTGGTATGCCTGTGGTTGTTGTGGTAACCTTGGAGCGGGAAGATG
AACTGTCAGGACCTGTCATCGCACCATTTTTTCCCCAAAAAAGAGAAGAAGGTTGGTGGG
TTGTCGTGGGCGATCCCAAGTCAAACAGCCTGATTTCAATTAAAAGACTCACACTTCAGC
AAAAGGCCAAGGTCAAGCTGGATTTTGTCCCGCCCTCTGCTGGCCAACACTCCTATACCC
TATACTTTATGAGTGATGCTTTCATGGGATGCGACCAAGAATACAAGCTTGACATCAATG
TTCAATCCGAGGAAGAAAGTGGAAGCGAGTCTGATTGAGAATGGAAAGGGGATTAATGGA
AAATGGATCCAAACATTTTGTTGTTCATAAAAAGATTCATAAAAACATACCTCTCCCTTC
ACACAGAAAATATCGGAGTGGCATTGACCCGGGTATTAGACAAGTGCATATTTCTGTGTT
GTATATCTCGAGGCCTGGTACTGCAATGCCCCCAGAGTATTTCAGCCGAGTTTGTTTGAT
GTACATAATTGTGGACCCAATTTGTGCTGTCAGCAGCATTATTTTTTGCAAATTGTGAAT
GTGGTTTTTAAACTGCCCCATACAGTGCTGCTGGTAAATAAATACTTGATAATAAATGAT
AGGCTACC
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[392-670] 1.55E-43 - T[680-892] 2.81E-47 - T[1223-1508] 4.85E-50 - T[1517-1726] 2.01E-41 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[481-692] 3.8E-31 - T[1328-1531] 1.7E-27 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[487-662] 1.8E-25 - T[1334-1504] 6.0E-24 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[494-677] 21.015 - T[1341-1515] 20.512 |
| SMART |
AAA+_ATPase (IPR003593) - T[499-816] 0.047 - T[1346-1495] 1.2 |
| CDD |
Helicase_C (IPR001650) - T[688-862] 2.0369E-14 - T[1602-1708] 7.53585E-9 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[688-925] 12.316 - T[1548-1756] 9.473 |
| Pfam |
Helicase_C (IPR001650) - T[771-862] 5.1E-7 - T[1618-1696] 3.1E-6 |
| SMART |
Helicase_C (IPR001650) - T[772-864] 8.0E-18 - T[1610-1698] 1.6E-13 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[892-996] 4.35E-7 - T[1726-1826] 2.99E-7 |
| SMART |
Sec63-dom (IPR004179) - T[985-1290] 2.6E-126 - T[1815-2127] 1.0E-105 |
| Pfam |
Sec63-dom (IPR004179) - T[986-1289] 1.1E-92 - T[1815-2125] 3.6E-77 |
| Gene3D |
C2_domain_sf (IPR035892) - T[1185-1293] 8.6E-48 - T[2018-2139] 8.2E-46 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[2019-2129] 1.68E-29 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ASCC3_HUMAN | 44.036 % | 1543 | 0 |
| U520_HUMAN | 78.188 % | 3529 | 0 |
| HFM1_HUMAN | 30.307 % | 310 | 1.22E-85 |