- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phfumi.CG.MTP2014.S8...' >
- Transcript 'Boleac.CG.SB_v3.S965...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S965.g15629.01.t
Possible name(s)
MTREX; SKIV2L
Gene model
Location
S965 [8,337 / 27,341]
Amino acid sequence
Length: 951
>Boleac.CG.SB_v3.S965.g15629.01.p
MKAVKRDALSCEEFENVQRQNNIKSLQESENINSIMDSLPKVETKSMDSLISGCTHEMAY
NIGLDIPPLLPRQGPAAKEYKFILDPFQQEALLCLDNNQSVLVSAHTSAGKTVVAEYAIA
MSLRDKQRVIYTTPIKALSNQKYRELYEEFQDVGLMTGDVTINPGASCLVMTTEILRSML
YRGSEVMREVAWVVFDEIHYMRNKERGVVWEETIILLPDNVRYVFLSATIPNARQFAEWI
CHLHKQVCHVVYTDYRPVPLQHYVFAAGGDGLRLVVDEHGNFREESFDCAMSGLRNVGEN
AKSDYNRRGKQGGQQGSSDLYKIVKMIMERSFQPVIVFSFSKKECEFYALQVAKLDFNSE
DEKKLVSEVFTNAMGSLSEEDRNLPQCLXATETFAMGVNMPARTVLFTSTRKFDGKDFRS
ITGGEYIQMSGRAGRRGMDDRGIVILMVDEKMTPSIGKSLLKGSPDPLNSAFRLTYNMVL
NLLRVEEINPEYMLEKSFYQFQHYKAVPEYLEKVKKLENQLSSVDIPDEDIAMNYYKIRQ
QLNKLTTQLEEFVHMPKYCLQFLQPGRLAKVSNGSDDFGWGVIINFEKSKKKSVDTERDE
EFIVDMLVNVSSESIKEKSRVPKPAGHDGSQKSEMAVLPFMLHLIKSISSVRIYLPKDLR
SNDNRRSVLLSMQEVFSRFPDGVPLLDPVDDLGIRDDRXMAIVRKIEAFEQRMYQHPLHE
SKHLKKLYKQCEEKMKIATEIKDAKKQLKKAQTILQMDELKCRKRVLRRLGYATIADVIE
TKGRVACEISSADELLLTELIFDGVFNHLTVEQCCALLSCFVFEEKAKEVPKLSEELAQP
RRQMIKAAQKIAKISMEAKMALDEEQYVDSFKWTLMDVVHSWCNGATFSQICQMTDTFEG
SIIRCMRRLEELLREMCHAAKAIGNTQLENKFSEGISKIKRDIVFAASLYL
Nucleotide sequence
Length: 2,966
>Boleac.CG.SB_v3.S965.g15629.01.t
GCAGTGATGTAGGAAAAAAGATTACAGAAAGTGAAGATAAAGTGGACATGAAGGCAGTCA
AACGTGATGCCTTGAGTTGTGAGGAGTTTGAAAATGTACAGAGACAAAATAACATAAAAT
CATTGCAAGAATCAGAAAATATCAACAGCATAATGGATTCACTGCCCAAAGTAGAGACGA
AGTCCATGGATTCGCTCATATCTGGTTGCACTCATGAAATGGCATATAATATTGGACTGG
ATATACCGCCGTTGCTGCCTAGGCAGGGACCTGCCGCAAAAGAGTACAAGTTTATCTTGG
ATCCATTTCAGCAGGAAGCCCTTCTTTGTCTTGATAACAACCAGTCTGTACTTGTTTCTG
CACACACATCTGCTGGAAAAACTGTAGTTGCGGAGTACGCCATTGCGATGTCATTGCGTG
ACAAACAAAGAGTAATCTACACTACTCCAATCAAGGCTTTGAGCAATCAGAAATATAGAG
AACTGTACGAGGAATTTCAAGATGTTGGACTCATGACAGGCGATGTGACTATCAATCCCG
GAGCTTCATGCTTGGTAATGACCACGGAAATTTTGAGGAGCATGCTCTACAGAGGCTCGG
AAGTAATGAGAGAAGTCGCTTGGGTGGTCTTTGACGAAATTCACTACATGAGAAATAAAG
AACGGGGTGTGGTATGGGAGGAAACCATCATTTTATTACCTGACAATGTACGATACGTAT
TCCTGTCTGCTACCATTCCGAACGCAAGGCAATTTGCAGAATGGATATGCCATCTCCACA
AGCAAGTGTGCCATGTCGTATACACGGACTATAGACCTGTCCCGTTGCAGCATTATGTTT
TTGCTGCCGGAGGAGACGGATTGCGTCTGGTCGTCGATGAACATGGAAACTTTCGTGAGG
AGAGCTTTGATTGTGCAATGTCGGGCCTCAGAAATGTTGGCGAAAATGCGAAGAGTGACT
ACAACCGTAGGGGAAAACAAGGAGGACAGCAAGGAAGCAGTGATCTGTACAAAATTGTGA
AGATGATCATGGAGCGTAGCTTTCAACCTGTCATCGTATTCAGCTTCAGCAAAAAAGAAT
GCGAATTTTATGCTCTGCAAGTGGCAAAGCTGGATTTTAATTCTGAAGACGAAAAGAAAC
TGGTTTCTGAAGTATTCACAAATGCAATGGGTTCATTGTCGGAAGAAGACCGAAACTTAC
CACAATGTCTGTTNGCTACCGAAACATTTGCTATGGGAGTTAATATGCCTGCTCGAACTG
TGCTCTTCACAAGCACGAGAAAGTTTGATGGAAAAGACTTCCGATCGATCACTGGTGGCG
AGTATATACAGATGAGCGGTCGGGCCGGAAGACGAGGTATGGATGATCGAGGAATCGTGA
TACTGATGGTTGATGAAAAAATGACTCCAAGCATTGGAAAAAGTTTGTTGAAGGGCTCAC
CTGATCCATTGAACTCAGCCTTTCGTCTTACTTACAACATGGTGCTGAACCTTCTTCGCG
TCGAGGAAATCAATCCGGAATACATGCTAGAGAAATCATTTTATCAATTTCAACATTACA
AAGCTGTTCCGGAATATTTAGAGAAGGTGAAGAAGCTAGAAAATCAATTGAGCAGCGTCG
ACATTCCTGATGAAGATATTGCGATGAATTACTACAAAATTCGACAACAACTGAATAAGT
TGACTACCCAACTGGAAGAATTTGTCCACATGCCAAAGTATTGCTTACAGTTTCTTCAGC
CAGGAAGGTTGGCTAAAGTCTCCAATGGAAGTGACGATTTCGGATGGGGAGTTATCATAA
ACTTTGAGAAATCAAAAAAAAAGTCAGTGGACACAGAACGCGACGAAGAATTTATTGTGG
ATATGCTTGTGAATGTTTCAAGTGAAAGTATAAAGGAAAAGTCTAGAGTTCCAAAGCCAG
CAGGACATGACGGATCGCAAAAGAGTGAAATGGCTGTTTTGCCATTCATGCTTCATCTCA
TCAAATCAATTAGCAGTGTCAGGATATATCTTCCGAAAGATTTGCGATCTAATGACAATA
GACGGTCTGTACTGTTATCGATGCAGGAAGTCTTCAGTAGGTTTCCTGATGGTGTACCTC
TTCTTGATCCAGTGGATGATCTTGGAATCCGTGATGACAGANTGATGGCTATTGTTCGAA
AAATTGAGGCTTTTGAACAGAGAATGTACCAGCACCCACTGCATGAAAGTAAACATTTGA
AAAAATTGTACAAGCAGTGTGAAGAAAAGATGAAGATTGCAACTGAAATCAAGGATGCAA
AAAAGCAACTGAAGAAAGCGCAGACCATATTGCAAATGGATGAACTGAAGTGTCGCAAAC
GAGTTTTGAGAAGACTGGGCTATGCAACTATAGCTGACGTTATAGAGACAAAAGGGCGTG
TTGCATGCGAAATTAGCTCTGCAGATGAACTTCTATTGACTGAACTTATCTTCGACGGTG
TTTTCAATCATTTGACAGTGGAGCAGTGTTGTGCACTTTTAAGCTGCTTCGTGTTTGAAG
AGAAGGCTAAAGAAGTTCCTAAACTTTCGGAAGAACTCGCTCAACCACGACGGCAAATGA
TTAAAGCTGCCCAAAAAATTGCCAAAATTTCCATGGAAGCCAAGATGGCACTGGACGAGG
AACAGTATGTTGACTCTTTCAAGTGGACGTTGATGGATGTTGTGCATTCCTGGTGCAATG
GAGCCACGTTTAGTCAGATATGTCAGATGACAGACACTTTTGAAGGGAGCATTATACGAT
GTATGCGGAGACTGGAAGAACTTCTCAGAGAAATGTGTCATGCAGCTAAGGCCATAGGAA
ATACTCAGCTCGAGAATAAATTTTCCGAAGGGATTTCCAAGATCAAGAGGGACATTGTTT
TTGCTGCGAGTCTGTACTTATGAAATGTGTCTCGGCAACTTGCGTCACTGCTTGCATTGC
GCGCGCGCTCAGTCGAGCACCCGTGC
| PIRSF |
Ski2-like (IPR016438) - T[3-389] 1.6E-176 - T[386-951] 2.5E-199 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[80-263] 4.8E-32 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[86-231] 1.2E-16 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[92-248] 23.537 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[95-233] 5.65E-44 - T[298-451] 5.65E-44 |
| CDD |
Helicase_C (IPR001650) - T[318-447] 3.40326E-12 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[319-486] 11.729 |
| SMART |
Helicase_C (IPR001650) - T[321-437] 6.9E-4 |
| Pfam |
rRNA_proc-arch_dom (IPR025696) - T[491-750] 6.6E-85 |
| SMART |
Ski2_C (IPR012961) - T[774-951] 1.0E-92 |
| Pfam |
Ski2_C (IPR012961) - T[777-946] 8.6E-58 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HFM1_HUMAN | 27.612 % | 114 | 1.51E-25 |
| MTREX_HUMAN | 67.607 % | 1350 | 0 |
| SKIV2_HUMAN | 34.896 % | 517 | 9.16E-166 |