- Transcript 'KH2012:KH.C11.22.v2....' >
- Clone 'cima876083' >
- Transcript 'KH2012:KH.C11.22.v3....' >
- Transcript 'Boleac.CG.SB_v3.S97....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S97.g15677.01.t
Possible name(s)
SOX14; SOX2; SOX21
Gene model
Location
S97 [251,777 / 253,182]
Amino acid sequence
Length: 392
>Boleac.CG.SB_v3.S97.g15677.01.p
MLAVDPQSNWMPIQYPTGTGMAVVPQSTHLPPPPPISGDGGIIQNLKPASYSAQSQLSNM
TAQMNVAQQNVSGSGSGTNNKSPQEQRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISK
RLGAEWKLLSETDKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTMLKKDKYGGSIMPPS
TGPPPAQSMPRSQLPPPMDYQHIGYPYHHVMPQDPYSSGYGTAGQGSLTPRYDIMYAPAY
STSSAIPGMGNSATQLTYPGAPTAYAMPHPSLSSAPTYGNVIPPVTSHSGNVRSPESTPD
AVGHHTSQHHAAASPVQHHHQAPHTPIAHQQGNQIQSMISMYLPHSSIHQVTQVPASSPS
ADNARLAPVQAVEYSAMEPIPGDPHISHMHEM
Nucleotide sequence
Length: 1,220
>Boleac.CG.SB_v3.S97.g15677.01.t
TAATTTAGAAACCATTCTCTAAATTTGGTCTCCAACATTTCATGCTGGCTGTGGATCCGC
AATCAAATTGGATGCCAATCCAATACCCCACCGGAACGGGTATGGCTGTGGTGCCGCAAA
GCACACACCTTCCTCCACCTCCTCCGATTTCTGGGGACGGTGGCATAATTCAAAACTTAA
AACCAGCATCTTATTCAGCACAGAGCCAATTATCTAACATGACGGCGCAGATGAACGTCG
CGCAACAAAACGTATCCGGATCAGGAAGTGGAACTAATAACAAGTCCCCTCAAGAGCAAC
GAGTGAAACGTCCCATGAACGCTTTCATGGTATGGTCACGTGGGCAGAGAAGAAAAATGG
CGCAAGAAAATCCTAAAATGCATAACTCAGAGATATCGAAACGTTTAGGAGCAGAATGGA
AACTTTTGTCTGAGACTGATAAACGGCCGTTTATTGACGAAGCCAAACGCCTTCGTGCGT
TACATATGAAGGAGCATCCTGATTACAAATATCGACCGCGTCGCAAGACAAAAACTATGT
TGAAAAAAGATAAATATGGGGGTAGCATTATGCCACCTTCAACTGGTCCTCCACCGGCCC
AATCTATGCCACGTAGTCAATTGCCTCCACCAATGGATTATCAACATATTGGCTATCCTT
ATCATCACGTTATGCCCCAAGACCCATATTCGTCGGGGTATGGTACAGCTGGTCAAGGTT
CTTTAACACCTAGGTACGATATTATGTACGCCCCGGCATACAGTACCTCTTCAGCCATAC
CAGGAATGGGAAACTCAGCAACCCAACTAACTTACCCCGGCGCGCCGACAGCATACGCAA
TGCCTCACCCATCATTATCATCAGCACCCACGTATGGAAATGTGATACCACCAGTTACAA
GTCACTCTGGCAACGTGAGATCACCAGAATCGACCCCTGACGCAGTAGGTCATCACACAT
CACAACATCATGCGGCAGCAAGTCCTGTACAGCATCATCATCAAGCCCCGCACACTCCAA
TCGCTCATCAACAAGGAAATCAAATTCAAAGCATGATCAGCATGTATCTACCCCACAGCA
GTATCCATCAAGTCACTCAAGTTCCCGCAAGCAGTCCATCGGCAGATAACGCGCGTTTGG
CACCAGTACAAGCAGTGGAGTATTCAGCGATGGAGCCGATACCAGGTGATCCACACATAT
CTCATATGCATGAAATGTAA
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[76-160] 1.44E-28 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[85-163] 2.8E-31 |
| SMART |
HMG_box_dom (IPR009071) - T[87-157] 2.5E-28 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[88-156] 22.928 |
| Pfam |
HMG_box_dom (IPR009071) - T[88-156] 3.7E-27 |
| Pfam |
SOX_fam (IPR022097) - T[157-191] 1.2E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SOX2_HUMAN | 46.071 % | 179 | 2.97E-53 |
| SOX21_HUMAN | 89.535 % | 171 | 1.05E-50 |
| SOX14_HUMAN | 89.412 % | 170 | 1.12E-50 |