- Clone 'ciad029d24' >
- Clone 'cieg003p07' >
- Clone 'cien149186' >
- Transcript 'KH2012:KH.C10.106.v1...'
Transcript Model
Transcript Id
KH2012:KH.C10.106.v1.A.ND2-1
Possible name(s)
MITF; TFE3; TFEB
Gene model
Location
KhC10 [2,739,066 / 2,757,514]
Amino acid sequence
Length: 562
>KH.C10.106.v1.A.ND2-1
LTQFSLQYKRLQCRKQSEKMGSRANMKMQLQRDKALMEEKRLRQASQNAAQASKSSSSST
INMPVVTLTSPPQLPVQVLKVETGLQNPTQYHVRETQRNQVREYISQSHKDGSKYMVRQL
FNPSQSAPTNAGDAFHANSTPASPLARLNLSTDPMTDIIDDIVSLESSFGDEPRFDRNAT
TLQTVSPSDLGSFARSSAHSLPVISNETSSSCPVIKREFTEEDARLFAKDRIKKDNHNII
ERRRRYNINDRIRELGHLVPKSSDPELRWNKGSILKAAVDYIQHLQNDQQKHRALEQRSK
QMETMNKKLLLRVQELEMTVQQYGINVDNSEKQGMMNQLLNFNTAPTAGMTDGMFTAEEE
HHVANFPTNAVSPQNRSPGTLTSQTAEIIVYQQPEQVAPGANTNPDQQFLHQQQQQQQQL
LTVDSTIINDQQQPSLSPNHQMQGNFSPANYNQQSPLGSAASSTLSPTHSEMNMQQQQQQ
QQQQQTQQQQQEQSNTLNLNLDEVDMTAFQFPANNDADPLTSIMGGGFSSLLTSEPNQFN
DVMMVDDYGLIKDDIFLSDANQ
Nucleotide sequence
Length: 2,444
>KH2012:KH.C10.106.v1.A.ND2-1
CTGGTTTCGTGACGTGTGTTTGTGTAGGGAAAGAAGGCTCGCTAGCTTTAGTTAAAGCTG
CTGTTTTGTTGCCAGTCTGGCTTAGTGTTTCATAAAAGTCAGCTGTTATGAGTGAACGTA
AATCAAAAGGTCGCATTCGAAATGTGACAATCAAGTATTGACTTACACAATTTTCACTTC
AGTATAAAAGACTGCAGTGTAGAAAACAAAGTGAAAAAATGGGTAGTCGCGCTAACATGA
AGATGCAGTTACAAAGGGACAAGGCCCTTATGGAAGAGAAGAGATTAAGACAAGCTTCAC
AAAATGCAGCTCAAGCCTCAAAAAGTTCTTCATCTTCAACTATTAACATGCCAGTTGTAA
CTCTAACTTCTCCCCCCCAACTACCTGTACAAGTGCTTAAGGTTGAGACTGGCCTACAGA
ACCCGACCCAATACCATGTTCGTGAAACACAACGTAACCAAGTTCGTGAGTACATCAGTC
AGTCTCATAAAGATGGTTCCAAATACATGGTCCGCCAGCTATTCAACCCTTCGCAAAGCG
CTCCCACCAACGCAGGTGACGCATTCCATGCTAACAGTACACCAGCGAGTCCTCTAGCTC
GTCTCAACTTGTCCACAGACCCGATGACCGACATAATAGACGACATTGTCAGCCTTGAGT
CAAGCTTCGGAGACGAGCCTCGCTTCGACCGTAACGCTACAACTCTCCAAACAGTTTCCC
CGTCTGACCTTGGAAGTTTCGCCCGCTCCTCTGCCCATTCCCTGCCCGTTATCTCCAACG
AAACGTCCTCATCGTGTCCTGTCATCAAACGTGAGTTTACGGAAGAAGACGCTCGTCTCT
TCGCTAAAGATCGGATCAAGAAGGACAATCACAATATAATTGAGCGGAGACGAAGGTACA
ATATAAACGATCGAATACGTGAGTTGGGACACCTCGTGCCAAAGTCGTCTGACCCAGAAT
TGCGTTGGAATAAAGGTTCCATACTGAAAGCTGCAGTAGATTACATACAGCACTTACAAA
ACGACCAACAGAAACATCGTGCACTTGAACAACGAAGTAAACAAATGGAGACGATGAATA
AGAAGTTACTGTTACGAGTTCAGGAACTCGAAATGACGGTACAACAGTACGGTATTAATG
TTGACAACAGCGAAAAACAAGGCATGATGAACCAGCTTCTTAACTTTAACACCGCCCCGA
CCGCGGGCATGACGGACGGGATGTTCACCGCAGAAGAGGAACACCACGTCGCAAATTTCC
CCACCAACGCCGTCTCGCCCCAGAACAGGTCGCCGGGTACATTAACATCACAAACAGCGG
AAATAATAGTTTACCAACAGCCAGAGCAGGTAGCACCTGGTGCGAATACGAACCCCGACC
AGCAGTTTTTACACCAACAACAACAACAACAACAACAGTTATTGACGGTCGACTCCACAA
TCATCAACGACCAACAACAGCCAAGTCTCTCCCCTAACCATCAGATGCAGGGTAACTTCT
CCCCTGCTAACTATAACCAGCAATCACCTTTGGGCAGTGCAGCTTCTAGCACTCTCTCGC
CAACACACAGTGAAATGAACATGCAACAACAACAACAACAGCAACAACAGCAACAAACAC
AACAGCAACAACAAGAACAGTCCAACACGTTAAATTTAAATCTTGACGAAGTAGATATGA
CAGCGTTTCAATTTCCCGCAAATAACGATGCCGATCCACTAACCAGTATAATGGGGGGCG
GGTTCAGCTCCTTGCTGACTTCAGAGCCAAATCAGTTTAATGACGTCATGATGGTGGACG
ATTACGGTCTTATAAAAGACGATATATTTCTGTCCGATGCTAACCAGTGATATTAACTGC
GTCTACGAAGCACAAGTCTTCTCTACCAATCAACATGACGCTGTAAGCTGAACAAGGAGC
TTGTAACCTTTCCGTGACACCCGGTTAAATGCCAGTTGCCACTCCAGTTGGCACCTGTGA
CGTTTTTTCTTACAAGGAAAAAGATGGTTCAAATTTGCTATAGAGTTCTGTATTAGGGTT
TTAAAGCCATTATCGGCTTTTTTTATACAAGAGTTCTAAATTACAAATCCTAAAAAGCTG
AGACATACGTTCTGTATGTCGACGTACCTCTTTCTTTTTAAAATCAAGTTTTCTTAAATC
CGTTTTTATTTTTTAACCGATAATCAAATTTTTACGCTTCAATCTAACAGCCGCGCAAAT
CGTGACCGAGTTTTTACCAGCGTGGTACTTTGACCAATTCATCTGTACAGTGATGCAATG
TTCCCTGTTCTTAACTAACGCGATGAGTTTTTACAGAAACGCTTTATTTTTCTCATAGCA
ATAGCAGGCCCAATTTTGGTGGCCGCTAACGCGTTGCAATTTCGCCCTTTTTTTATCGAA
TCGCTTCGTTTTCGTTAATATTATATTTGCCATACGGAAATCCA
| PANTHER |
TFEB (IPR024098) - T[21-541] 4.4E-128 |
| Pfam |
MiT/TFE_N (IPR031867) - T[23-163] 1.6E-25 |
| SUPERFAMILY |
HLH_DNA-bd_sf (IPR036638) - T[230-300] 5.5E-17 |
| ProSiteProfiles |
bHLH_dom (IPR011598) - T[232-285] 16.622 |
| Pfam |
bHLH_dom (IPR011598) - T[233-286] 1.6E-17 |
| CDD |
bHLH_dom (IPR011598) - T[233-290] 5.99969E-16 |
| SMART |
bHLH_dom (IPR011598) - T[238-291] 2.8E-16 |
| Gene3D |
HLH_DNA-bd_sf (IPR036638) - T[243-324] 2.9E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TFE3_HUMAN | 45.583 % | 221 | 5.35E-65 |
| TFEB_HUMAN | 42.857 % | 210 | 1.61E-61 |
| MITF_HUMAN | 39.589 % | 205 | 3.53E-59 |