- Transcript 'KH2012:KH.C10.106.v2...' >
- Clone 'ciad001i16' >
- Transcript 'KH2012:KH.C10.106.v1...'
Transcript Model
Transcript Id
KH2012:KH.C10.106.v1.A.nonSL3-1
Possible name(s)
MITF; TFE3; TFEB
Gene model
Location
KhC10 [2,739,149 / 2,757,514]
Amino acid sequence
Length: 562
>KH.C10.106.v1.A.nonSL3-1
LTQFSLQYKRLQCRKQSEKMGSRANMKMQLQRDKALMEEKRLRQASQNAAQASKSSSSST
INMPVVTLTSPPQLPVQVLKVETGLQNPTQYHVRETQRNQVREYISQSHKDGSKYMVRQL
FNPSQSAPTNAGDAFHANSTPASPLARLNLSTDPMTDIIDDIVSLESSFGDEPRFDRNAT
TLQTVSPSDLGSFARSSAHSLPVISNETSSSCPVIKREFTEEDARLFAKDRIKKDNHNII
ERRRRYNINDRIRELGHLVPKSSDPELRWNKGSILKAAVDYIQHLQNDQQKHRALEQRSK
QMETMNKKLLLRVQELEMTVQQYGINVDNSEKQGMMNQLLNFNTAPTAGMTDGMFTAEEE
HHVANFPTNAVSPQNRSPGTLTSQTAEIIVYQQPEQVAPGANTNPDQQFLHQQQQQQQQL
LTVDSTIINDQQQPSLSPNHQMQGNFSPANYNQQSPLGSAASSTLSPTHSEMNMQQQQQQ
QQQQQTQQQQQEQSNTLNLNLDEVDMTAFQFPANNDADPLTSIMGGGFSSLLTSEPNQFN
DVMMVDDYGLIKDDIFLSDANQ
Nucleotide sequence
Length: 2,361
>KH2012:KH.C10.106.v1.A.nonSL3-1
AGTGTTTCATAAAAGTCAGCTGTTATGAGTGAACGTAAATCAAAAGGTCGCATTCGAAAT
GTGACAATCAAGTATTGACTTACACAATTTTCACTTCAGTATAAAAGACTGCAGTGTAGA
AAACAAAGTGAAAAAATGGGTAGTCGCGCTAACATGAAGATGCAGTTACAAAGGGACAAG
GCCCTTATGGAAGAGAAGAGATTAAGACAAGCTTCACAAAATGCAGCTCAAGCCTCAAAA
AGTTCTTCATCTTCAACTATTAACATGCCAGTTGTAACTCTAACTTCTCCCCCCCAACTA
CCTGTACAAGTGCTTAAGGTTGAGACTGGCCTACAGAACCCGACCCAATACCATGTTCGT
GAAACACAACGTAACCAAGTTCGTGAGTACATCAGTCAGTCTCATAAAGATGGTTCCAAA
TACATGGTCCGCCAGCTATTCAACCCTTCGCAAAGCGCTCCCACCAACGCAGGTGACGCA
TTCCATGCTAACAGTACACCAGCGAGTCCTCTAGCTCGTCTCAACTTGTCCACAGACCCG
ATGACCGACATAATAGACGACATTGTCAGCCTTGAGTCAAGCTTCGGAGACGAGCCTCGC
TTCGACCGTAACGCTACAACTCTCCAAACAGTTTCCCCGTCTGACCTTGGAAGTTTCGCC
CGCTCCTCTGCCCATTCCCTGCCCGTTATCTCCAACGAAACGTCCTCATCGTGTCCTGTC
ATCAAACGTGAGTTTACGGAAGAAGACGCTCGTCTCTTCGCTAAAGATCGGATCAAGAAG
GACAATCACAATATAATTGAGCGGAGACGAAGGTACAATATAAACGATCGAATACGTGAG
TTGGGACACCTCGTGCCAAAGTCGTCTGACCCAGAATTGCGTTGGAATAAAGGTTCCATA
CTGAAAGCTGCAGTAGATTACATACAGCACTTACAAAACGACCAACAGAAACATCGTGCA
CTTGAACAACGAAGTAAACAAATGGAGACGATGAATAAGAAGTTACTGTTACGAGTTCAG
GAACTCGAAATGACGGTACAACAGTACGGTATTAATGTTGACAACAGCGAAAAACAAGGC
ATGATGAACCAGCTTCTTAACTTTAACACCGCCCCGACCGCGGGCATGACGGACGGGATG
TTCACCGCAGAAGAGGAACACCACGTCGCAAATTTCCCCACCAACGCCGTCTCGCCCCAG
AACAGGTCGCCGGGTACATTAACATCACAAACAGCGGAAATAATAGTTTACCAACAGCCA
GAGCAGGTAGCACCTGGTGCGAATACGAACCCCGACCAGCAGTTTTTACACCAACAACAA
CAACAACAACAACAGTTATTGACGGTCGACTCCACAATCATCAACGACCAACAACAGCCA
AGTCTCTCCCCTAACCATCAGATGCAGGGTAACTTCTCCCCTGCTAACTATAACCAGCAA
TCACCTTTGGGCAGTGCAGCTTCTAGCACTCTCTCGCCAACACACAGTGAAATGAACATG
CAACAACAACAACAACAGCAACAACAGCAACAAACACAACAGCAACAACAAGAACAGTCC
AACACGTTAAATTTAAATCTTGACGAAGTAGATATGACAGCGTTTCAATTTCCCGCAAAT
AACGATGCCGATCCACTAACCAGTATAATGGGGGGCGGGTTCAGCTCCTTGCTGACTTCA
GAGCCAAATCAGTTTAATGACGTCATGATGGTGGACGATTACGGTCTTATAAAAGACGAT
ATATTTCTGTCCGATGCTAACCAGTGATATTAACTGCGTCTACGAAGCACAAGTCTTCTC
TACCAATCAACATGACGCTGTAAGCTGAACAAGGAGCTTGTAACCTTTCCGTGACACCCG
GTTAAATGCCAGTTGCCACTCCAGTTGGCACCTGTGACGTTTTTTCTTACAAGGAAAAAG
ATGGTTCAAATTTGCTATAGAGTTCTGTATTAGGGTTTTAAAGCCATTATCGGCTTTTTT
TATACAAGAGTTCTAAATTACAAATCCTAAAAAGCTGAGACATACGTTCTGTATGTCGAC
GTACCTCTTTCTTTTTAAAATCAAGTTTTCTTAAATCCGTTTTTATTTTTTAACCGATAA
TCAAATTTTTACGCTTCAATCTAACAGCCGCGCAAATCGTGACCGAGTTTTTACCAGCGT
GGTACTTTGACCAATTCATCTGTACAGTGATGCAATGTTCCCTGTTCTTAACTAACGCGA
TGAGTTTTTACAGAAACGCTTTATTTTTCTCATAGCAATAGCAGGCCCAATTTTGGTGGC
CGCTAACGCGTTGCAATTTCGCCCTTTTTTTATCGAATCGCTTCGTTTTCGTTAATATTA
TATTTGCCATACGGAAATCCA
| PANTHER |
TFEB (IPR024098) - T[21-541] 4.4E-128 |
| Pfam |
MiT/TFE_N (IPR031867) - T[23-163] 1.6E-25 |
| SUPERFAMILY |
HLH_DNA-bd_sf (IPR036638) - T[230-300] 5.5E-17 |
| ProSiteProfiles |
bHLH_dom (IPR011598) - T[232-285] 16.622 |
| Pfam |
bHLH_dom (IPR011598) - T[233-286] 1.6E-17 |
| CDD |
bHLH_dom (IPR011598) - T[233-290] 5.99969E-16 |
| SMART |
bHLH_dom (IPR011598) - T[238-291] 2.8E-16 |
| Gene3D |
HLH_DNA-bd_sf (IPR036638) - T[243-324] 2.9E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TFE3_HUMAN | 45.583 % | 221 | 5.35E-65 |
| TFEB_HUMAN | 42.857 % | 210 | 1.61E-61 |
| MITF_HUMAN | 39.589 % | 205 | 3.53E-59 |